BLASTX nr result
ID: Sinomenium21_contig00043463
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00043463
(264 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not... 157 1e-36
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [... 155 6e-36
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype... 154 1e-35
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera] 154 1e-35
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr... 154 2e-35
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su... 153 3e-35
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su... 152 4e-35
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su... 152 6e-35
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 152 6e-35
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ... 150 1e-34
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su... 150 2e-34
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun... 149 3e-34
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A... 149 4e-34
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps... 148 9e-34
ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group] g... 147 1e-33
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [... 147 1e-33
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ... 147 1e-33
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ... 147 1e-33
tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea m... 147 2e-33
ref|NP_001149261.1| LOC100282883 [Zea mays] gi|195625852|gb|ACG3... 147 2e-33
>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 588
Score = 157 bits (397), Expect = 1e-36
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQRFPKVKIRE+KD+YLKFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNS+VLND
Sbjct: 5 SYQRFPKVKIREMKDDYLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTSDRAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSR 88
>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
family protein [Theobroma cacao]
Length = 318
Score = 155 bits (392), Expect = 6e-36
Identities = 79/85 (92%), Positives = 83/85 (97%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPKVKIRE+KD+Y KFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNS+VLN
Sbjct: 4 VSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 64 DEFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
[Populus trichocarpa] gi|550331423|gb|EEE87820.2|
DNA-directed RNA polymerase II 36 kDa polypeptide B
family protein [Populus trichocarpa]
Length = 323
Score = 154 bits (389), Expect = 1e-35
Identities = 77/86 (89%), Positives = 84/86 (97%)
Frame = +3
Query: 6 AVSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVL 185
+VSYQRFPK+KIRE+KD+YLKFEL +TDASMANALRRVMIAEVPTIAIDLVEIEVNS+VL
Sbjct: 3 SVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
Query: 186 NDEFIAHRLGLIPLTSDRAMSMRFSR 263
NDEFIAHRLGLIPLTS+RAM MRFSR
Sbjct: 63 NDEFIAHRLGLIPLTSERAMGMRFSR 88
>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 154 bits (389), Expect = 1e-35
Identities = 77/85 (90%), Positives = 83/85 (97%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPK+KIREVKD+Y KFEL +TDASMANALRRVMIAEVPT+AIDLVEIEVNS+VLN
Sbjct: 4 VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 64 DEFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 3-like [Citrus
sinensis] gi|557524889|gb|ESR36195.1| hypothetical
protein CICLE_v10028849mg [Citrus clementina]
Length = 319
Score = 154 bits (388), Expect = 2e-35
Identities = 78/84 (92%), Positives = 82/84 (97%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQRFPKVKIRE+KD+Y KFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNS+VLND
Sbjct: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 153 bits (386), Expect = 3e-35
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPK+KIREVKD+Y KFEL +TDASMANALRRVMIAEVPT+AIDLVEIEVNS+VLN
Sbjct: 4 VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS+RAM+MRFSR
Sbjct: 64 DEFIAHRLGLIPLTSERAMAMRFSR 88
>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 152 bits (385), Expect = 4e-35
Identities = 77/84 (91%), Positives = 82/84 (97%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQRFPKVKIRE++D+Y KFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNS+VLND
Sbjct: 5 SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Solanum lycopersicum]
Length = 319
Score = 152 bits (383), Expect = 6e-35
Identities = 73/85 (85%), Positives = 84/85 (98%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPK+K+REVKD+++KFEL DTDAS+ANALRR+MIAEVPTIAIDLVEIEVNS+VLN
Sbjct: 4 VSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFI+HRLGL+PLTS+RAMSMRFSR
Sbjct: 64 DEFISHRLGLVPLTSERAMSMRFSR 88
>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 318
Score = 152 bits (383), Expect = 6e-35
Identities = 75/84 (89%), Positives = 82/84 (97%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQRFP++KIRE+KD+Y KFEL DTDASMANALRRVMIAEVPT+AIDLVEIEVNS+VLND
Sbjct: 5 SYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Solanum tuberosum]
Length = 319
Score = 150 bits (380), Expect = 1e-34
Identities = 73/85 (85%), Positives = 84/85 (98%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPK+KIREVKD+++KFEL +TDAS+ANALRR+MIAEVPTIAIDLVEIEVNS+VLN
Sbjct: 4 VSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFI+HRLGL+PLTS+RAMSMRFSR
Sbjct: 64 DEFISHRLGLVPLTSERAMSMRFSR 88
>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Fragaria vesca subsp. vesca]
Length = 318
Score = 150 bits (378), Expect = 2e-34
Identities = 74/84 (88%), Positives = 82/84 (97%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQRFP+VKIRE++ +YLKFEL DTDAS+ANALRRVMIAEVPT+AIDLVEIE+NS+VLND
Sbjct: 5 SYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTSDRAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSR 88
>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
gi|462397216|gb|EMJ03015.1| hypothetical protein
PRUPE_ppa008812mg [Prunus persica]
Length = 318
Score = 149 bits (377), Expect = 3e-34
Identities = 73/84 (86%), Positives = 82/84 (97%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
SYQR P+VKIRE++D+Y+KFEL DTDAS+ANALRRVMIAEVPT+AIDLVEIE+NS+VLND
Sbjct: 5 SYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTSDRAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSR 88
>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
gi|548856809|gb|ERN14637.1| hypothetical protein
AMTR_s00038p00194050 [Amborella trichopoda]
Length = 324
Score = 149 bits (376), Expect = 4e-34
Identities = 73/85 (85%), Positives = 82/85 (96%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFPKVKIRE+KD+YLKFEL +TD SMANALRR+M+AEVPTIAIDLVEIE NS+VLN
Sbjct: 4 VSYQRFPKVKIREMKDDYLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANSSVLN 63
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEF+AHRLGLIPLTS++AMSMRFSR
Sbjct: 64 DEFLAHRLGLIPLTSEKAMSMRFSR 88
>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
gi|482566867|gb|EOA31056.1| hypothetical protein
CARUB_v10014208mg [Capsella rubella]
Length = 319
Score = 148 bits (373), Expect = 9e-34
Identities = 73/84 (86%), Positives = 81/84 (96%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
+YQRFPKVKIRE+KD+Y KFEL +TD SMANALRRVMI+EVPT+AIDLVEIEVNS+VLND
Sbjct: 5 TYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSR 88
>ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA
polymerase II [Oryza sativa Japonica Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa
Japonica Group] gi|215692481|dbj|BAG87901.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein
OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein
OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 147 bits (372), Expect = 1e-33
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSYQRFP+V+IRE+KD+Y KFEL DTDASMANALRRVMIAEVPT+AIDLVEIEVNS+VLN
Sbjct: 8 VSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 67
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS AM+MRFSR
Sbjct: 68 DEFIAHRLGLIPLTSAAAMAMRFSR 92
>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
polypeptide A; AltName: Full=DNA-directed RNA polymerase
II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
Short=RNA polymerase II subunit B3-A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
putative DNA-directed RNA polymerase II third largest
subunit [Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
II subunit RPB3-A [Arabidopsis thaliana]
Length = 319
Score = 147 bits (372), Expect = 1e-33
Identities = 72/84 (85%), Positives = 81/84 (96%)
Frame = +3
Query: 12 SYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLND 191
+YQRFPK+KIRE+KD+Y KFEL +TD SMANALRRVMI+EVPT+AIDLVEIEVNS+VLND
Sbjct: 5 TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 192 EFIAHRLGLIPLTSDRAMSMRFSR 263
EFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSR 88
>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Glycine max]
Length = 320
Score = 147 bits (372), Expect = 1e-33
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSY R P+VKIRE+KD+Y KFEL DTDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+VLN
Sbjct: 5 VSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLN 64
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 DEFIAHRLGLIPLTSERAMSMRFSR 89
>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
[Glycine max]
Length = 319
Score = 147 bits (372), Expect = 1e-33
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +3
Query: 9 VSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTVLN 188
VSY R P+VKIRE+KD+Y KFEL DTDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+VLN
Sbjct: 5 VSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLN 64
Query: 189 DEFIAHRLGLIPLTSDRAMSMRFSR 263
DEFIAHRLGLIPLTS+RAMSMRFSR
Sbjct: 65 DEFIAHRLGLIPLTSERAMSMRFSR 89
>tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 147 bits (371), Expect = 2e-33
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = +3
Query: 3 SAVSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTV 182
S SYQRFP+V+IRE+KD+Y KFEL DTDASMANALRRVMIAEVPT+AIDLVEIEVNS+V
Sbjct: 5 SGTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 64
Query: 183 LNDEFIAHRLGLIPLTSDRAMSMRFSR 263
LNDEFIAHRLGLIPLTS AM MRFSR
Sbjct: 65 LNDEFIAHRLGLIPLTSAAAMQMRFSR 91
>ref|NP_001149261.1| LOC100282883 [Zea mays] gi|195625852|gb|ACG34756.1| DNA-directed
RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA
polymerase II polypeptide A [Zea mays]
Length = 328
Score = 147 bits (371), Expect = 2e-33
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = +3
Query: 3 SAVSYQRFPKVKIREVKDEYLKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSTV 182
S SYQRFP+V+IRE+KD+Y KFEL DTDASMANALRRVMIAEVPT+AIDLVEIEVNS+V
Sbjct: 5 SGTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 64
Query: 183 LNDEFIAHRLGLIPLTSDRAMSMRFSR 263
LNDEFIAHRLGLIPLTS AM MRFSR
Sbjct: 65 LNDEFIAHRLGLIPLTSAAAMQMRFSR 91