BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00043247
         (713 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacillifo...   203   4e-50
gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subc...   202   9e-50
gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-c...   202   9e-50
gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subc...   202   9e-50
tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacillifo...   202   9e-50
gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subc...   201   1e-49
emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]         201   1e-49
gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subc...   201   2e-49
tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacillifo...   199   5e-49
emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group] gi...   198   1e-48
gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]     198   2e-48
gb|AGC25937.1| hypothetical protein, partial [Piper DNA virus 1]      175   3e-42
gb|AAP53052.1| retrotransposon protein, putative, Ty3-gypsy subc...   170   3e-40
gb|AAX96229.1| retrotransposon protein, putative, Ty3-gypsy sub-...   166   9e-39
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]         164   2e-38
ref|YP_003284237.1| unnamed protein product [Sugarcane bacillifo...   155   6e-37
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v...   159   7e-37
ref|YP_003208050.1| putative polyprotein [Pelargonium vein bandi...   150   3e-36
ref|NP_039820.1| polyprotein [Commelina yellow mottle virus] gi|...   153   5e-36
ref|YP_004732983.2| polyprotein [Grapevine vein-clearing virus] ...   152   6e-36

>tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1718

 Score =  203 bits (516), Expect(2) = 4e-50
 Identities = 101/192 (52%), Positives = 132/192 (68%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +I+  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 1243 SKRDIEKIIQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 1300

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 1301 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 1360

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 1361 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 1420

Query: 153  AF*RKMDNIFKK 118
             F RKM NIF +
Sbjct: 1421 IFQRKMQNIFNE 1432



 Score = 21.9 bits (45), Expect(2) = 4e-50
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHLESF 26
            IDD++V S + ++   HLE F
Sbjct: 1441 IDDLLVFSRTYKEHIAHLEIF 1461


>gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1098

 Score =  202 bits (514), Expect = 9e-50
 Identities = 100/190 (52%), Positives = 131/190 (68%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +++  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 472  SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 529

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 530  FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 589

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 590  NKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 649

Query: 153  AF*RKMDNIF 124
             F RKM NIF
Sbjct: 650  LFQRKMQNIF 659


>gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
            Japonica Group]
          Length = 2828

 Score =  202 bits (514), Expect = 9e-50
 Identities = 100/190 (52%), Positives = 131/190 (68%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +++  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 2202 SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 2259

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 2260 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 2319

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 2320 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 2379

Query: 153  AF*RKMDNIF 124
             F RKM NIF
Sbjct: 2380 LFQRKMQNIF 2389


>gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 764

 Score =  202 bits (514), Expect = 9e-50
 Identities = 100/190 (52%), Positives = 131/190 (68%)
 Frame = -3

Query: 693 TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
           +K  +E +++  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 138 SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 195

Query: 513 FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
           FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 196 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 255

Query: 333 NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
           NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 256 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 315

Query: 153 AF*RKMDNIF 124
            F RKM NIF
Sbjct: 316 LFQRKMQNIF 325


>tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1711

 Score =  202 bits (514), Expect = 9e-50
 Identities = 100/190 (52%), Positives = 131/190 (68%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +++  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 1236 SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 1293

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 1294 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 1353

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 1354 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 1413

Query: 153  AF*RKMDNIF 124
             F RKM NIF
Sbjct: 1414 LFQRKMQNIF 1423


>gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 730

 Score =  201 bits (512), Expect(2) = 1e-49
 Identities = 100/192 (52%), Positives = 132/192 (68%)
 Frame = -3

Query: 693 TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
           +K  +E +I+  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D +E
Sbjct: 76  SKRDIEKIIQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIKE 133

Query: 513 FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
           FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 134 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 193

Query: 333 NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
           NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 194 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 253

Query: 153 AF*RKMDNIFKK 118
            F RKM NIF +
Sbjct: 254 IFQRKMQNIFNE 265



 Score = 21.9 bits (45), Expect(2) = 1e-49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  IDDIMVHSSSKEKQSRHLESF 26
           IDD++V S + ++   HLE F
Sbjct: 274 IDDLLVFSRTYKEHIAHLEIF 294


>emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]
          Length = 429

 Score =  201 bits (512), Expect(2) = 1e-49
 Identities = 100/192 (52%), Positives = 132/192 (68%)
 Frame = -3

Query: 693 TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
           +K  +E +I+  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 27  SKRDIEKIIQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 84

Query: 513 FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
           FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 85  FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 144

Query: 333 NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
           NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 145 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 204

Query: 153 AF*RKMDNIFKK 118
            F RK+ NIF +
Sbjct: 205 IFQRKIQNIFNE 216



 Score = 21.9 bits (45), Expect(2) = 1e-49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  IDDIMVHSSSKEKQSRHLESF 26
           IDD++V S + ++   HLE F
Sbjct: 225 IDDLLVFSRTYKEHIAHLEIF 245


>gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 792

 Score =  201 bits (512), Expect = 2e-49
 Identities = 99/190 (52%), Positives = 131/190 (68%)
 Frame = -3

Query: 693 TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
           +K  +E +++  E  +I+G    P+K+WEKN I+  + I+NP+ IIK      +  D EE
Sbjct: 138 SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINILNPEYIIKTSPIEATPKDIEE 195

Query: 513 FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
           FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 196 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 255

Query: 333 NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
           NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 256 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 315

Query: 153 AF*RKMDNIF 124
            F RKM NIF
Sbjct: 316 LFQRKMQNIF 325


>tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1718

 Score =  199 bits (507), Expect(2) = 5e-49
 Identities = 100/192 (52%), Positives = 130/192 (67%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +I+  E  +I+G    P K+W KN I+  + IINP+ IIK      +  D EE
Sbjct: 1243 SKRDIEKIIQRLEDIQIIGE--IPXKYWXKNAIECKINIINPEYIIKTSPIEATPKDIEE 1300

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 1301 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 1360

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 1361 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 1420

Query: 153  AF*RKMDNIFKK 118
             F RKM NIF +
Sbjct: 1421 IFQRKMQNIFNE 1432



 Score = 21.9 bits (45), Expect(2) = 5e-49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHLESF 26
            IDD++V S + ++   HLE F
Sbjct: 1441 IDDLLVFSRTYKEHIAHLEIF 1461


>emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group]
           gi|116310779|emb|CAH67571.1| H0315A08.1 [Oryza sativa
           Indica Group]
          Length = 685

 Score =  198 bits (504), Expect(2) = 1e-48
 Identities = 99/192 (51%), Positives = 131/192 (68%)
 Frame = -3

Query: 693 TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
           +K  +E +I+  E  +I+G    P+K+W KN I+  + IINP+ IIK      +  D EE
Sbjct: 138 SKRDIEKIIQRLEDIQIIGE--IPIKYWGKNAIECKINIINPEYIIKTSPIEATPKDIEE 195

Query: 513 FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
           FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L +N   D+Y I 
Sbjct: 196 FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNNNTIEDAYNIP 255

Query: 333 NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQ 154
           NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNAP 
Sbjct: 256 NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPA 315

Query: 153 AF*RKMDNIFKK 118
            F RKM NIF +
Sbjct: 316 IFQRKMQNIFNE 327



 Score = 21.9 bits (45), Expect(2) = 1e-48
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  IDDIMVHSSSKEKQSRHLESF 26
           IDD++V S + ++   HLE F
Sbjct: 336 IDDLLVFSRTYKEHIAHLEIF 356


>gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1326

 Score =  198 bits (503), Expect = 2e-48
 Identities = 99/194 (51%), Positives = 131/194 (67%)
 Frame = -3

Query: 699  YNTKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDK 520
            + +K  +E +I+  E  +I+G    P+ +WEKN I+  + IINP+ IIK      +  D 
Sbjct: 816  FKSKRDIEKIIQRLEDIQIIGE--IPMIYWEKNAIECKINIINPEYIIKTSPIEATPKDI 873

Query: 519  EEFKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYK 340
            E+FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M+ NYK+L DN   D+Y 
Sbjct: 874  EQFKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVKNYKRLNDNTIEDAYN 933

Query: 339  IANKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNA 160
            I NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LKNA
Sbjct: 934  IPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNA 993

Query: 159  PQAF*RKMDNIFKK 118
            P  F RKM NIF +
Sbjct: 994  PAIFQRKMQNIFNE 1007


>gb|AGC25937.1| hypothetical protein, partial [Piper DNA virus 1]
          Length = 2027

 Score =  175 bits (444), Expect(2) = 3e-42
 Identities = 90/162 (55%), Positives = 113/162 (69%)
 Frame = -3

Query: 594  KMDMPIINPDVIIKVEMPSMSLIDKEEFKMQIADLLKLGVIRKSNSPHGSMALIVRNHSE 415
            +  + I NPD+II+      +  D EEFK QI +LL L +IR+S SPH S A IVRNH+E
Sbjct: 907  EFSLNIKNPDLIIRTANLEYTPEDIEEFKKQIKELLDLKLIRRSTSPHRSAAFIVRNHAE 966

Query: 414  QKRGKA*MIVNYKKLTDNIHNDSYKIANKDKILNKVQDSCWFSKFDCSSQFW*IKMKESS 235
            QKRGKA ++ NYK+L DN H+D+Y + +KD ILN +Q+   FSKFD  S +  IKMKE  
Sbjct: 967  QKRGKARIVYNYKRLNDNTHDDAYNLPHKDSILNLIQNKKIFSKFDLKSGYNQIKMKEED 1026

Query: 234  VPWTAFTCLEGLYEWLVMPFRLKNAPQAF*RKMDNIFKKPEF 109
             PWTAFTC EGL+EW V+ F LKNAP  F R MD++FKK EF
Sbjct: 1027 RPWTAFTCPEGLFEWNVLSFGLKNAPAIFQRFMDSLFKKYEF 1068



 Score = 23.5 bits (49), Expect(2) = 3e-42
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 100  CDSCIDDIMVHSSSKEKQSRHLE 32
            C   IDDI+V S + ++  +HLE
Sbjct: 1069 CIVYIDDILVASDTVQEHIKHLE 1091


>gb|AAP53052.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1183

 Score =  170 bits (430), Expect(2) = 3e-40
 Identities = 82/136 (60%), Positives = 99/136 (72%)
 Frame = -3

Query: 525  DKEEFKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDS 346
            D EEFKM I +LLKLG IR+S SPH S A IVRNH E+ RGK+ MI+NYK+L DN   D+
Sbjct: 717  DIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHVEEVRGKSRMIINYKRLNDNTIEDA 776

Query: 345  YKIANKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLK 166
            Y I NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G YEWLVMP  LK
Sbjct: 777  YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 836

Query: 165  NAPQAF*RKMDNIFKK 118
            NAP  F RKM NIF +
Sbjct: 837  NAPAIFQRKMQNIFNE 852



 Score = 21.9 bits (45), Expect(2) = 3e-40
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  IDDIMVHSSSKEKQSRHLESF 26
           IDD++V S + ++   HLE F
Sbjct: 861 IDDLLVFSRTYKEHIAHLEIF 881


>gb|AAX96229.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77549888|gb|ABA92685.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 695

 Score =  166 bits (419), Expect = 9e-39
 Identities = 81/164 (49%), Positives = 112/164 (68%)
 Frame = -3

Query: 693  TKNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE 514
            +K  +E +++  E  +I+G    P+K+WEKN I+  + IINP+ IIK      +  D EE
Sbjct: 533  SKKDIEKIVQRLEDIQIIGE--IPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEE 590

Query: 513  FKMQIADLLKLGVIRKSNSPHGSMALIVRNHSEQKRGKA*MIVNYKKLTDNIHNDSYKIA 334
            FKM I +LLKLG IR+S SPH S A IVRNH+E+ RGK+ M++NYK+L DN   D+Y I 
Sbjct: 591  FKMHIEELLKLGAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIP 650

Query: 333  NKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEG 202
            NK + +N++Q S +FSKFD  + FW +KM E S+ WTAFTC +G
Sbjct: 651  NKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQG 694


>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
          Length = 699

 Score =  164 bits (416), Expect = 2e-38
 Identities = 77/158 (48%), Positives = 107/158 (67%)
 Frame = -3

Query: 606 KNKIKMDMPIINPDVIIKVEMPSMSLIDKEEFKMQIADLLKLGVIRKSNSPHGSMALIVR 427
           K K +  + +++P+ +IK +    S  D+EEFK QI +LLKLG+IR S SPH S A +VR
Sbjct: 254 KGKFEAQITLLDPNKVIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSSPAFMVR 313

Query: 426 NHSEQKRGKA*MIVNYKKLTDNIHNDSYKIANKDKILNKVQDSCWFSKFDCSSQFW*IKM 247
           NH+E KRGKA M++NYKKL DN   D Y + NK+++L ++    ++S FDC S FW +++
Sbjct: 314 NHAEIKRGKARMVINYKKLNDNTKGDGYLLPNKEQLLQRIGGKTYYSSFDCKSGFWQVRL 373

Query: 246 KESSVPWTAFTCLEGLYEWLVMPFRLKNAPQAF*RKMD 133
              ++  TAF+C +G YEWLVMPF LK AP  F R MD
Sbjct: 374 APETIQLTAFSCPQGHYEWLVMPFGLKQAPAIFQRHMD 411


>ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
            gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane
            bacilliform virus]
          Length = 1792

 Score =  155 bits (391), Expect(2) = 6e-37
 Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 12/183 (6%)
 Frame = -3

Query: 624  PLKHWEKNKIKMDMPIINPDVII-----KVEMPSMSLIDKEEFKMQIADLLKLGVIRKSN 460
            PLKHW KN++K  + I NPD+II     K   P M    KE+ K  +  LL+L VIR S 
Sbjct: 1191 PLKHWRKNQVKCSLEIKNPDMIIEDRPLKHVTPKM----KEQMKKHVDKLLELKVIRPST 1246

Query: 459  SPHGSMALIVRNHSE-------QKRGKA*MIVNYKKLTDNIHNDSYKIANKDKILNKVQD 301
            S H + A+IV + +E       +KRGK  ++ NYK+L DN   D Y +   + I+ ++  
Sbjct: 1247 SKHRTTAMIVESGTEIDPKTGQEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIQRIGR 1306

Query: 300  SCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQAF*RKMDNIFK 121
            S  +SKFD  S F  + M+E+S+PWTAF  ++GLYEWLVMPF LKNAP  F RKMDN F+
Sbjct: 1307 SKIYSKFDLKSGFHQVAMEEASIPWTAFWAIDGLYEWLVMPFGLKNAPAVFQRKMDNCFR 1366

Query: 120  KPE 112
              E
Sbjct: 1367 GTE 1369



 Score = 26.2 bits (56), Expect(2) = 6e-37
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHLESFQSI 17
            IDDI++ S S ++  +HL+ F  I
Sbjct: 1376 IDDILIFSESPQQHVQHLKKFMEI 1399


>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
           gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
           banding virus]
          Length = 708

 Score =  159 bits (403), Expect = 7e-37
 Identities = 76/158 (48%), Positives = 106/158 (67%)
 Frame = -3

Query: 606 KNKIKMDMPIINPDVIIKVEMPSMSLIDKEEFKMQIADLLKLGVIRKSNSPHGSMALIVR 427
           K K +  + +++ + IIK +    S  D+EEFK QI +LLKLG+IR S SPH S A +VR
Sbjct: 263 KGKFEAQIALLDTNKIIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSSPAFMVR 322

Query: 426 NHSEQKRGKA*MIVNYKKLTDNIHNDSYKIANKDKILNKVQDSCWFSKFDCSSQFW*IKM 247
           NH+E KRGKA M++NYKKL D+   D Y + NK+++L ++    ++S FDC S FW +++
Sbjct: 323 NHAEIKRGKARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDCKSGFWQVRL 382

Query: 246 KESSVPWTAFTCLEGLYEWLVMPFRLKNAPQAF*RKMD 133
              ++  TAF+C +G YEWLVMPF LK AP  F R MD
Sbjct: 383 APETIQLTAFSCPQGHYEWLVMPFGLKQAPAIFQRHMD 420


>ref|YP_003208050.1| putative polyprotein [Pelargonium vein banding virus]
            gi|258547408|gb|ACV74337.1| putative polyprotein
            [Pelargonium vein banding virus]
          Length = 1970

 Score =  150 bits (380), Expect(2) = 3e-36
 Identities = 87/202 (43%), Positives = 118/202 (58%), Gaps = 9/202 (4%)
 Frame = -3

Query: 690  KNRLEDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDVIIKVEMPSMSLIDKEE- 514
            ++R E LI        +G    P+KHW +N++K  + IINPD+ I+ + P   +  + E 
Sbjct: 1344 ESRFEGLIGRLRNLGFIGEN--PVKHWARNQVKCRLEIINPDLTIQ-DKPLKHVTPQMEA 1400

Query: 513  -FKMQIADLLKLGVIRKSNSPHGSMALIVRNHS-------EQKRGKA*MIVNYKKLTDNI 358
             FK     LL+LGVIR S S H +MA++V++ +       ++ RGK  M+ NY+ L DN 
Sbjct: 1401 QFKRHTDALLQLGVIRPSKSRHRTMAIMVQSGTTVDPATGKETRGKERMVYNYRSLNDNT 1460

Query: 357  HNDSYKIANKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMP 178
            H D Y +   + IL K+  S  +SKFD  S F  + M E S+PWTAF    GLYEWLVMP
Sbjct: 1461 HKDQYSLPGINTILKKIGTSKVYSKFDLKSGFHQVAMDEESIPWTAFCVPGGLYEWLVMP 1520

Query: 177  FRLKNAPQAF*RKMDNIFKKPE 112
            F LKNAP  F RKMD+ FK  E
Sbjct: 1521 FGLKNAPSVFQRKMDDCFKGTE 1542



 Score = 28.1 bits (61), Expect(2) = 3e-36
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHLESFQSI 17
            IDDI+V S ++E+  +HL+ F  I
Sbjct: 1549 IDDILVFSKNEEEHQKHLQKFLEI 1572


>ref|NP_039820.1| polyprotein [Commelina yellow mottle virus]
            gi|130594|sp|P19199.2|POL_COYMV RecName: Full=Polyprotein
            P3; Includes: RecName: Full=Putative movement protein;
            Short=MP; Includes: RecName: Full=Capsid protein;
            AltName: Full=Coat protein; Short=CP; Includes: RecName:
            Full=Protease; Short=PR; Includes: RecName: Full=Reverse
            transcriptase; Short=RT; Includes: RecName:
            Full=Ribonuclease H gi|59050|emb|CAA37110.1| unnamed
            protein product [Commelina yellow mottle virus]
          Length = 1886

 Score =  153 bits (387), Expect(2) = 5e-36
 Identities = 88/197 (44%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
 Frame = -3

Query: 678  EDLIKLAEVTEIVGNRSYPLKHWEKNKIKMDMPIINPDV-IIKVEMPSMSLIDKEEFKMQ 502
            +DL+K  +  + +G    P++ W+ NKIK  + IINPD+ I+   +  ++  D+E    Q
Sbjct: 1364 KDLLKEMKEMKYIGEN--PMEFWKNNKIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQ 1421

Query: 501  IADLLKLGVIRKSNSPHGSMALIVRNHSE-------QKRGKA*MIVNYKKLTDNIHNDSY 343
            I  LL++ VIR S S H S A IVR+ +E       +K+GK  M+ NYK L +N  +D Y
Sbjct: 1422 INLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQY 1481

Query: 342  KIANKDKILNKVQDSCWFSKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKN 163
             +   + I++KV  S  +SKFD  S FW + M+E SVPWTAF     LYEWLVMPF LKN
Sbjct: 1482 SLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKN 1541

Query: 162  APQAF*RKMDNIFKKPE 112
            AP  F RKMDN+FK  E
Sbjct: 1542 APAIFQRKMDNVFKGTE 1558



 Score = 24.6 bits (52), Expect(2) = 5e-36
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHL 35
            IDDI+V S + E+ S+HL
Sbjct: 1565 IDDILVFSETAEQHSQHL 1582


>ref|YP_004732983.2| polyprotein [Grapevine vein-clearing virus]
            gi|344345640|gb|AEI98823.2| polyprotein [Grapevine
            vein-clearing virus]
          Length = 1941

 Score =  152 bits (385), Expect(2) = 6e-36
 Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
 Frame = -3

Query: 624  PLKHWEKNKIKMDMPIINPDVIIKVEMPS-MSLIDKEEFKMQIADLLKLGVIRKSNSPHG 448
            PLKHW KN+++  + IINPD+ I+ + P  ++L DK +++  I  LL LGVIR S S H 
Sbjct: 1402 PLKHWSKNRVRCKLDIINPDITIEAKPPGHLTLEDKVKYQKHIDALLDLGVIRPSKSRHR 1461

Query: 447  SMALIVRNHS-------EQKRGKA*MIVNYKKLTDNIHNDSYKIANKDKILNKVQDSCWF 289
            S A IV + +       ++ RGK  M+++Y+ L DN H D Y +     I+  +  +  F
Sbjct: 1462 SAAFIVASGTSVDPKTGKETRGKERMVIDYRMLNDNCHKDQYSLPGITSIIKSLGQAKIF 1521

Query: 288  SKFDCSSQFW*IKMKESSVPWTAFTCLEGLYEWLVMPFRLKNAPQAF*RKMDNIFKKPE 112
            SKFD  S F  + M+E S+PWTAF    GLYEWLVMPF ++NAP  F RKMD  FK  E
Sbjct: 1522 SKFDLKSGFHQVMMEEESIPWTAFISPAGLYEWLVMPFGIQNAPAIFQRKMDECFKGTE 1580



 Score = 25.0 bits (53), Expect(2) = 6e-36
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 88   IDDIMVHSSSKEKQSRHLESFQSI 17
            IDDI+V S+S  +  +HL+   SI
Sbjct: 1587 IDDILVFSNSIREHEKHLQRMLSI 1610