BLASTX nr result
ID: Sinomenium21_contig00042197
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00042197
(426 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 171 1e-40
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 171 1e-40
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 171 1e-40
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 169 5e-40
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 169 5e-40
emb|CAN76948.1| hypothetical protein VITISV_017167 [Vitis vinifera] 167 1e-39
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 162 6e-38
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 161 8e-38
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 161 8e-38
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 159 4e-37
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 159 4e-37
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 159 4e-37
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 159 4e-37
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [... 158 8e-37
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 157 2e-36
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 156 2e-36
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 156 3e-36
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 155 5e-36
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 155 5e-36
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 155 7e-36
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 171 bits (433), Expect = 1e-40
Identities = 75/139 (53%), Positives = 100/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS LS+LSH+++PL +W++AF ATYLI
Sbjct: 463 SFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATYLI 522
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ ++ N +P E +H+ D+S LRVF ACWPNLRPYNKHKL F+SK C F+G+S
Sbjct: 523 NRVPSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGFSN 582
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+S+GRVY+SR
Sbjct: 583 MHKGFKCLDISSGRVYISR 601
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 171 bits (432), Expect = 1e-40
Identities = 73/139 (52%), Positives = 102/139 (73%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS LS+LSH+++PL +W++AF ATYLI
Sbjct: 587 SFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLI 646
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ +++N+SP E ++ + D+S LR+F ACWPNLRPYN HKL F+SK CVF+G+S
Sbjct: 647 NRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFST 706
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCL++STGR+Y+SR
Sbjct: 707 MHKGFKCLEVSTGRIYISR 725
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 171 bits (432), Expect = 1e-40
Identities = 73/139 (52%), Positives = 102/139 (73%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS LS+LSH+++PL +W++AF ATYLI
Sbjct: 620 SFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLI 679
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ +++N+SP E ++ + D+S LR+F ACWPNLRPYN HKL F+SK CVF+G+S
Sbjct: 680 NRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFST 739
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCL++STGR+Y+SR
Sbjct: 740 MHKGFKCLEVSTGRIYISR 758
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 169 bits (427), Expect = 5e-40
Identities = 75/139 (53%), Positives = 99/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
+ F K GI++ ++CPH HQQ GS LS+L+H+++PL +W++AF A YLI
Sbjct: 440 TFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLI 499
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N PT ILN +P+E ++H+ D+S LR+F CWPNLRPYN HKL F+SK CVF+GYS
Sbjct: 500 NRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSS 559
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+STGRVYVSR
Sbjct: 560 LHKGFKCLDVSTGRVYVSR 578
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 169 bits (427), Expect = 5e-40
Identities = 75/139 (53%), Positives = 99/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
+ F K GI++ ++CPH HQQ GS LS+L+H+++PL +W++AF A YLI
Sbjct: 440 TFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLI 499
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N PT ILN +P+E ++H+ D+S LR+F CWPNLRPYN HKL F+SK CVF+GYS
Sbjct: 500 NRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSS 559
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+STGRVYVSR
Sbjct: 560 LHKGFKCLDVSTGRVYVSR 578
>emb|CAN76948.1| hypothetical protein VITISV_017167 [Vitis vinifera]
Length = 467
Score = 167 bits (424), Expect = 1e-39
Identities = 73/139 (52%), Positives = 98/139 (70%)
Frame = +3
Query: 6 TSIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYL 185
T + GI++R+ CP+THQQ + L++L+H NLP I+WED F TA ++
Sbjct: 228 TKHLQNQGISHRITCPYTHQQASAIERRHXQIVEVGLALLAHYNLPKIFWEDVFLTAVFI 287
Query: 186 INHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYS 365
IN L TPIL + SPYEM++H D++FL F ACWP LRPYN+HK+DF SK+C+FI YS
Sbjct: 288 INRLXTPILQHRSPYEMVHHHKXDYNFLXAFGCACWPYLRPYNRHKMDFXSKTCIFIRYS 347
Query: 366 VNHHGYKCLDLSTGRVYVS 422
V H GYKCLD+ST +++VS
Sbjct: 348 VGHRGYKCLDVSTXKIFVS 366
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 162 bits (409), Expect = 6e-38
Identities = 73/139 (52%), Positives = 97/139 (69%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS L++L++S++PL +W++AF A YLI
Sbjct: 593 SFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLI 652
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N PT +L L+P E ++++ D+S LRVF ACWP+LRPYN HKL F+SK C F+GYS
Sbjct: 653 NRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYST 712
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD STGRVY+SR
Sbjct: 713 LHKGFKCLDPSTGRVYISR 731
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 161 bits (408), Expect = 8e-38
Identities = 73/139 (52%), Positives = 98/139 (70%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S FKK GI++R++CPHTHQQ G+ L++L+++++PL +W+ AF TATYLI
Sbjct: 505 SFFKKIGISHRVSCPHTHQQNGAAERKHRHIIEVGLALLANASMPLKFWDQAFLTATYLI 564
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N LP+ ++N P ++ D+S LRVF ACWPNLRPYN HKL F+S C FIGYS
Sbjct: 565 NLLPSKVINFEIPATRLFGDTSDYSNLRVFGCACWPNLRPYNSHKLSFRSTQCAFIGYSS 624
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+STGR+Y+SR
Sbjct: 625 MHKGFKCLDISTGRIYISR 643
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 161 bits (408), Expect = 8e-38
Identities = 71/139 (51%), Positives = 100/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS LS+LS++++PL +W++AF ATYLI
Sbjct: 593 SFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLI 652
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ + N +P E ++++ D+ LRVF ACWP+LRPYN HKL F+SK CVF+G+S
Sbjct: 653 NRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFST 712
Query: 369 NHHGYKCLDLSTGRVYVSR 425
+H G+KCLD+S+GRVY+SR
Sbjct: 713 HHKGFKCLDVSSGRVYISR 731
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 159 bits (402), Expect = 4e-37
Identities = 69/139 (49%), Positives = 100/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S FK+ GIA++++CPHTHQQ G+ LS+L+H+++PL +W++AF ATYLI
Sbjct: 470 SFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLI 529
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N LP +++ +P ++H+ D+ LR F ACWPNLRPYN HKL F+SK CVF+G+S
Sbjct: 530 NRLPRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSN 589
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCL+++TG+VY+SR
Sbjct: 590 LHKGFKCLEVATGQVYISR 608
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 159 bits (402), Expect = 4e-37
Identities = 72/139 (51%), Positives = 97/139 (69%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI + ++CPHTHQQ GS L++L++S++PL +W +AF +A YLI
Sbjct: 591 SFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLI 650
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N P+ +L+++SP E + D++ LRVF ACWPNLRPYNKHKL F+S +C F+GYS
Sbjct: 651 NRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYST 710
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD STGRVY+SR
Sbjct: 711 LHKGFKCLDPSTGRVYISR 729
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 159 bits (402), Expect = 4e-37
Identities = 70/139 (50%), Positives = 98/139 (70%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
+ F + GI++ ++CPHTHQQ G+ LS+L+H+++PL +W++AF ATYLI
Sbjct: 580 TFFNEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLI 639
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N LP+ ++ +P E ++ + D+ LR F ACWPNLRPYN HKL F+SK CVF+G+S
Sbjct: 640 NRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSN 699
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+STGRVYVSR
Sbjct: 700 IHKGFKCLDVSTGRVYVSR 718
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 159 bits (402), Expect = 4e-37
Identities = 69/139 (49%), Positives = 100/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S FK+ GIA++++CPHTHQQ G+ LS+L+H+++PL +W++AF ATYLI
Sbjct: 581 SFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLI 640
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N LP +++ +P ++H+ D+ LR F ACWPNLRPYN HKL F+SK CVF+G+S
Sbjct: 641 NRLPRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSN 700
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCL+++TG+VY+SR
Sbjct: 701 LHKGFKCLEVATGQVYISR 719
>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group] gi|31431217|gb|AAP53032.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1042
Score = 158 bits (399), Expect = 8e-37
Identities = 68/139 (48%), Positives = 99/139 (71%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F+K GI++ ++CPHTHQQ GS L++L+++++PL YW++AF AT++I
Sbjct: 486 SFFEKIGISHHVSCPHTHQQNGSAERKHRLIVEVGLALLAYASMPLKYWDEAFLAATHII 545
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ IL +P E +++ LD+S R+F ACWPNLRPYN HKL F+S CVF+G S
Sbjct: 546 NRIPSRILQYDTPLECLFNHKLDYSSFRIFGCACWPNLRPYNAHKLQFRSMQCVFLGPSH 605
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H+GYKCLD++TGR+Y+ R
Sbjct: 606 THNGYKCLDIATGRIYICR 624
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 157 bits (396), Expect = 2e-36
Identities = 69/137 (50%), Positives = 96/137 (70%)
Frame = +3
Query: 15 FKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLINH 194
F K GI++ ++CPHTHQQ GS LS+L+H+++PL +W++AF ATYLIN
Sbjct: 586 FTKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINR 645
Query: 195 LPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSVNH 374
P+ ++ +P E ++H+ ++ LRVF ACWPNLRPYN KL F+SK CVF+GYS H
Sbjct: 646 TPSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLH 705
Query: 375 HGYKCLDLSTGRVYVSR 425
G+KCLD++ GRVY+SR
Sbjct: 706 KGFKCLDVAAGRVYISR 722
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 156 bits (395), Expect = 2e-36
Identities = 70/139 (50%), Positives = 98/139 (70%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F K GI++ ++CP+ HQQ GS L++L+H+++PL +W++AF ATYLI
Sbjct: 204 SFFTKIGISHHVSCPYAHQQNGSAERKHRHIVEVGLALLAHASVPLKFWDEAFLAATYLI 263
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N LP+ ++ +P E + + ++S LR F ACWPNLRPYNK KL+F+SK CVF+GYS
Sbjct: 264 NRLPSKVIQYSAPLERLLDQKPNYSALRTFGCACWPNLRPYNKRKLEFRSKQCVFLGYSN 323
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD+STGRVY+SR
Sbjct: 324 IHKGFKCLDVSTGRVYISR 342
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 156 bits (394), Expect = 3e-36
Identities = 67/139 (48%), Positives = 94/139 (67%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
+ F K GI + ++CPHTHQQ GS LS+L+H++LPL +W++A+ + YLI
Sbjct: 422 TFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLI 481
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +PT +L SP E ++ + D+ LR F ACWP+LRPYN HK+ F+SK C F+GYS
Sbjct: 482 NRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSP 541
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G++CLD STGR+Y+SR
Sbjct: 542 LHKGFRCLDSSTGRIYISR 560
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 155 bits (392), Expect = 5e-36
Identities = 68/139 (48%), Positives = 98/139 (70%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F + GI + ++CPHTHQQ GS LS+LS++++PL +W++AF ATYLI
Sbjct: 596 SFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLI 655
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ + N +P E ++++ D+S LRVF CWP+L PYN HKL F+SK CVF+G+S
Sbjct: 656 NRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVFLGFST 715
Query: 369 NHHGYKCLDLSTGRVYVSR 425
+H G+K LD+S+GRVY+SR
Sbjct: 716 HHKGFKFLDVSSGRVYISR 734
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 155 bits (392), Expect = 5e-36
Identities = 68/139 (48%), Positives = 98/139 (70%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
S F + GI + ++CPHTHQQ GS LS+LS++++PL +W++AF ATYLI
Sbjct: 596 SFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLI 655
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N +P+ + N +P E ++++ D+S LRVF CWP+L PYN HKL F+SK CVF+G+S
Sbjct: 656 NRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVFLGFST 715
Query: 369 NHHGYKCLDLSTGRVYVSR 425
+H G+K LD+S+GRVY+SR
Sbjct: 716 HHKGFKFLDVSSGRVYISR 734
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 155 bits (391), Expect = 7e-36
Identities = 69/139 (49%), Positives = 97/139 (69%)
Frame = +3
Query: 9 SIFKKNGIANRLACPHTHQQMGSXXXXXXXXXXXXLSMLSHSNLPLIYWEDAFYTATYLI 188
+IF K GI + ++CP+ HQQ GS LS+L+H+++PL +W++AF TATYLI
Sbjct: 508 AIFTKIGITHHVSCPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYLI 567
Query: 189 NHLPTPILNNLSPYEMIYHRVLDFSFLRVFRYACWPNLRPYNKHKLDFQSKSCVFIGYSV 368
N P+ ++ +P E + ++ ++S LR F ACWPNLRPYN KL F+SK CVF+GYS
Sbjct: 568 NRTPSKVIQYSTPLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSN 627
Query: 369 NHHGYKCLDLSTGRVYVSR 425
H G+KCLD++TGRVY+SR
Sbjct: 628 IHKGFKCLDVATGRVYISR 646