BLASTX nr result
ID: Sinomenium21_contig00042030
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00042030
(756 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 57 8e-14
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 57 6e-13
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 64 8e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 52 6e-11
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 58 5e-10
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 50 6e-10
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 70 8e-10
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 40 8e-10
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 50 2e-09
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 56 3e-09
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 59 4e-09
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 41 7e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 47 8e-09
ref|XP_007212580.1| hypothetical protein PRUPE_ppa015871mg, part... 46 3e-08
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 47 5e-08
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 36 5e-08
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 37 6e-08
ref|XP_007214027.1| hypothetical protein PRUPE_ppa016677mg [Prun... 45 7e-08
ref|XP_007212886.1| hypothetical protein PRUPE_ppa021750mg, part... 45 7e-08
ref|XP_007224309.1| hypothetical protein PRUPE_ppa019854mg [Prun... 45 7e-08
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 57.4 bits (137), Expect(3) = 8e-14
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+WA + K E+ GLGLR +K+ C ++ L W+ LLK W
Sbjct: 190 IAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAV 249
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGILEKS 711
++ S + RKILK++++A KV + +G SFW +W G L +S
Sbjct: 250 RENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIES 300
Score = 36.2 bits (82), Expect(3) = 8e-14
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 185 LPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*A 364
LPLI H +K+ W A LSY G+L ++ ++L + G F L CI
Sbjct: 117 LPLIDHIKQKICSWSARFLSYTGRLNLISSILWSICNFWMGAFRL---PRDCIREIDKMC 173
Query: 365 SKFFTSSAGL 394
S + S L
Sbjct: 174 SAYLWSGGEL 183
Score = 29.6 bits (65), Expect(3) = 8e-14
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 9 KCSVKKILLCQCSKASIFFTESVQNTIQLAAIP--NFPIRSLPIKYLGLPLIPGKLS 173
KCS KI + + S + + +T + I +F + +LP++YLGLPL+ + S
Sbjct: 60 KCSDLKISM----EKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFS 112
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 56.6 bits (135), Expect(3) = 6e-13
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
ISW ++ K + GLGLR +K+ C ++ L W+ LLK E W
Sbjct: 413 ISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIV 472
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
++ + S I +KILK++ +A+ K +G+G+ SFW +W G L
Sbjct: 473 KENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRL 520
Score = 32.0 bits (71), Expect(3) = 6e-13
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PLI K++ W + LS+AG+ ++ +++ S + F L CI S
Sbjct: 341 PLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQL---PRACIQEIEKLCS 397
Query: 368 KFFTSSAGL 394
F S L
Sbjct: 398 SFLWSGTNL 406
Score = 31.6 bits (70), Expect(3) = 6e-13
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 SIFFTESVQNTIQLAAIPNFP--IRSLPIKYLGLPLIPGKLSVI 179
S F+ + +T + +FP + LPI+YLGLPL+ +LS +
Sbjct: 294 STIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSV 337
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 63.5 bits (153), Expect(3) = 8e-13
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
ISW + K + GLGLR +K+ C ++ + L T W++ L++ +SIW+
Sbjct: 507 ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL 566
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
+Q+ S I RKILK +++A+ S+V +G+G+ SFW +W G L
Sbjct: 567 KQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRL 614
Score = 29.6 bits (65), Expect(3) = 8e-13
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 90 QLAAIPNFPIRSLPIKYLGLPLIPGKLSVITACHLSIILER 212
++AA F + LP++YLGLPL+ +L T+ S +LE+
Sbjct: 402 EIAAKFLFDVGQLPVRYLGLPLVTKRL---TSADYSPLLEQ 439
Score = 26.6 bits (57), Expect(3) = 8e-13
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PL+ K++ W S+AG+ ++K+VL + F L CI S
Sbjct: 435 PLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRL---PRQCIREIDKLCS 491
Query: 368 KFFTSSA 388
F S +
Sbjct: 492 SFLWSGS 498
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 52.4 bits (124), Expect(3) = 6e-11
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKK--L*TDWLSCKLLKNESIW 555
I+W+ + K E+ GLGL+ +K+ + + L+ L+ + L W++ L++ E+ W
Sbjct: 1007 IAWSEVCKLKEEGGLGLKPLKEA--NEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFW 1064
Query: 556 TAQQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGILEK 708
+ ++ S + RKILK ++ A ++ + G SFW +W P G L +
Sbjct: 1065 SVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQ 1116
Score = 31.6 bits (70), Expect(3) = 6e-11
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +2
Query: 185 LPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*A 364
LPL+ ++ W LS+AG+L ++K+VL + +F L C+
Sbjct: 934 LPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRL---PKACLQEIEKMF 990
Query: 365 SKFFTSSAGL 394
S F S L
Sbjct: 991 SAFLWSGPDL 1000
Score = 29.3 bits (64), Expect(3) = 6e-11
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 54 SIFFTESVQNTIQLAAIPNFPIR--SLPIKYLGLPLIPGKLS 173
S F + + + + FP +LP+KYLGLPL+ +++
Sbjct: 888 STIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMT 929
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 57.8 bits (138), Expect(2) = 5e-10
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
+SW + K ++ GLGLR +K+ C ++ L W+ LLKNE+ W
Sbjct: 817 VSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFV 876
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQG 696
++ S + RK++K++E A+ KV + G SFW +W G
Sbjct: 877 KENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMG 922
Score = 33.1 bits (74), Expect(2) = 5e-10
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 108 NFPIRSLPIKYLGLPLIPGKLSVITACHLSIILERSFKVGRPYAYLMLANY*WLKLCSKV 287
+F + LP++YLGLPL+ +L TA + +LE+ + + + L+N L L S V
Sbjct: 718 HFEVGQLPVRYLGLPLLTKRL---TATDYAPLLEQLKRKIGSWTHRYLSNAGRLNLISSV 774
Query: 288 LLS 296
L S
Sbjct: 775 LWS 777
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 50.1 bits (118), Expect(2) = 6e-10
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+W + K ++ GLGLR +K+ C ++ L W+ LLK S W
Sbjct: 242 IAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAV 301
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
++ S + +K+LK+++ A K + +G FW NW G L
Sbjct: 302 RENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRL 349
Score = 40.4 bits (93), Expect(2) = 6e-10
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = +2
Query: 185 LPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*A 364
LPLI H KK+ W A LSYAG+L ++ +VL + G F L CI
Sbjct: 169 LPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRL---PRECIREIDKMC 225
Query: 365 SKFFTSSAGL 394
S + S L
Sbjct: 226 SAYLWSGGDL 235
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 70.1 bits (170), Expect = 8e-10
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
ISW + K ++ GLGLR +K+ C ++ + L W+ LL+N S W
Sbjct: 860 ISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEV 919
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQG-ILEKS 711
+QT S I +K+LK++E+A+ SKV +G+GK SFW NW G +LE++
Sbjct: 920 KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERT 971
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 40.0 bits (92), Expect(3) = 8e-10
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISL-------VAG*LNKKL*TDWLSCKLLK 540
+SWA + + GLGLR++ + W +S+ VA L DW L
Sbjct: 853 VSWAALCLPKSEGGLGLRRLLE----WNKTLSMRLIWRLFVA---KDSLWADWQHLHHLS 905
Query: 541 NESIWTAQQTRDCSSITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
S W + + S +++L + LA +G+G +W NW G L
Sbjct: 906 RGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPL 959
Score = 36.6 bits (83), Expect(3) = 8e-10
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PL+ + + W CLS+AG++ ++ +V+ GS+ + F L GCI + S
Sbjct: 781 PLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLL---PKGCIKRIESLCS 837
Query: 368 KFFTS 382
+F S
Sbjct: 838 RFLWS 842
Score = 32.7 bits (73), Expect(3) = 8e-10
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 111 FPIRSLPIKYLGLPLIPGKLSV 176
FPI +LPI+YLGLPL+ KL +
Sbjct: 755 FPIGTLPIRYLGLPLMNRKLRI 776
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 50.1 bits (118), Expect(3) = 2e-09
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+W + K ++ GLG++ + + C ++ L +W+ +++ S W+A
Sbjct: 433 ITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSA 492
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
S + +K+LK++++A+ KV + G SFW NW G L
Sbjct: 493 NDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQL 540
Score = 31.6 bits (70), Expect(3) = 2e-09
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PL+ K+ W A LSYAG+L ++ +V+ + + L GCI S
Sbjct: 361 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPA---GCIKEIEKLCS 417
Query: 368 KFFTSSAGL 394
F S L
Sbjct: 418 AFLWSGPEL 426
Score = 26.2 bits (56), Expect(3) = 2e-09
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 93 LAAIPNFPIRSLPIKYLGLPLIPGKLS 173
L+A P F LP++YLGLPL+ +++
Sbjct: 330 LSAFP-FASGQLPVRYLGLPLLTKQMT 355
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 55.8 bits (133), Expect(2) = 3e-09
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKK-L*TDWLSCKLLKNESIWT 558
+SW + E+ GLGLR + + C + L+ L+ L WL +++ S W+
Sbjct: 80 VSWNDVCMPKEEGGLGLRSLTEANKVCC--LKLIWRLLSSSSLWVQWLRQYVIRKGSFWS 137
Query: 559 AQQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
+ T S + RK+LK++ LA ++ + +GK VSFW NW P G L
Sbjct: 138 LRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPL 186
Score = 32.3 bits (72), Expect(2) = 3e-09
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 185 LPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*A 364
+PLI +++ W A LS+AG+L ++ +V+ + F L N CI
Sbjct: 7 IPLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRL---PNACIKEIDGLC 63
Query: 365 SKFFTSSAGL 394
S F S L
Sbjct: 64 SAFLWSGPEL 73
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 58.9 bits (141), Expect(2) = 4e-09
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+WA + K E+ GLGLR +K+ C ++ L W+ LLK S W
Sbjct: 109 ITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAV 168
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
++ S + RKILK++++A KV + +G SFW +W G L
Sbjct: 169 RENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRL 216
Score = 28.9 bits (63), Expect(2) = 4e-09
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 209 KKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*ASKFFTSSA 388
+K+ W A LSYAG+L ++ +VL + G F L CI S + S
Sbjct: 44 QKICSWSARFLSYAGRLNLISSVLWSICNFWMGAFRL---PRDCIREIDKMCSAYLWSGG 100
Query: 389 GL 394
L
Sbjct: 101 EL 102
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 41.2 bits (95), Expect(3) = 7e-09
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 161 RKAFRHNCLPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGC 340
+K +H+ PL+ + W A LS+AG+L ++K+V+ ++ + IF L N C
Sbjct: 320 QKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASIFIL---PNQC 376
Query: 341 IHNYSN*ASKFFTSSA 388
+H + F S A
Sbjct: 377 LHKLEQMCNAFLWSGA 392
Score = 39.7 bits (91), Expect(3) = 7e-09
Identities = 30/107 (28%), Positives = 44/107 (41%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
ISW + S E GLGL+++ SW NK L + + S+W +
Sbjct: 401 ISWDIVCSSKESGGLGLKRLS----SW-----------NKVLALKLIWLLFTASGSLWVS 445
Query: 562 QQTRDCSSITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
+ RK+ K +E+A P +G G FW+ NW G L
Sbjct: 446 W----VRWVWRKLCKLREVARPFVICEVGSGITARFWQDNWTGHGPL 488
Score = 25.4 bits (54), Expect(3) = 7e-09
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 123 SLPIKYLGLPLIPGKL 170
SLP++YLG+PL+ K+
Sbjct: 307 SLPVRYLGVPLMSQKM 322
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 47.4 bits (111), Expect(3) = 8e-09
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+W+ + + ++ GLG++ + + C ++ L W+ +++ + W+A
Sbjct: 1157 IAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSA 1216
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
+ S + +K+LK++ELA+ KV + +G SFW +W G L
Sbjct: 1217 NERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRL 1264
Score = 31.6 bits (70), Expect(3) = 8e-09
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PLI K+ W A LSYAG+L ++ +V+ + + L GCI S
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPA---GCIREIEKLCS 1141
Query: 368 KFFTS 382
F S
Sbjct: 1142 AFLWS 1146
Score = 26.9 bits (58), Expect(3) = 8e-09
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 54 SIFFTESVQNTIQLAAIPNFPIRS--LPIKYLGLPLIPGKLS 173
S + V + ++ + +FP + LP++YLGLPL+ +++
Sbjct: 1038 STIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMT 1079
>ref|XP_007212580.1| hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica]
gi|462408445|gb|EMJ13779.1| hypothetical protein
PRUPE_ppa015871mg, partial [Prunus persica]
Length = 1499
Score = 46.2 bits (108), Expect(2) = 3e-08
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Frame = +1
Query: 367 KVLHLISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNE 546
K HL+ W R++KS E+ GLG+ +++++ + L WL L+
Sbjct: 1129 KKCHLVRWERVTKSKEEGGLGIGSLRERI---------------EALRAKWLWRFPLETN 1173
Query: 547 SIWTAQQTRDCSSITRKILKWQELAEPHS------KVNLGDGKLVSFWKHNWHPQGILEK 708
S+W + + I W+E+++ ++ + ++G+G+ + FW+ W +GIL K
Sbjct: 1174 SLW-HRIIKSKYGIDSNGNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGIL-K 1231
Query: 709 SQFLSLTS 732
F L+S
Sbjct: 1232 DLFPRLSS 1239
Score = 38.5 bits (88), Expect(2) = 3e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 155 NPRKAFRHNCLPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVG 328
NPR N P++ K+LQ WK CLS G+L +++AVL Y +F + +G
Sbjct: 1053 NPRALNFWN--PVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIG 1108
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 47.0 bits (110), Expect(3) = 5e-08
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNESIWTA 561
I+W + K ++ GLG++ + + C ++ L +W+ +++ S W+A
Sbjct: 1002 ITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSA 1061
Query: 562 QQTRDCSS-ITRKILKWQELAEPHSKVNLGDGKLVSFWKHNW 684
S + +K+L ++++A+ KV + G SFW NW
Sbjct: 1062 NDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNW 1103
Score = 31.6 bits (70), Expect(3) = 5e-08
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PL+ K+ W A LSYAG+L ++ +V+ + + L GCI S
Sbjct: 930 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPA---GCIKEIEKLCS 986
Query: 368 KFFTSSAGL 394
F S L
Sbjct: 987 AFLWSGPEL 995
Score = 24.6 bits (52), Expect(3) = 5e-08
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 93 LAAIPNFPIRSLPIKYLGLPLIPGKLS 173
L+A P F LP++YLG PL+ +++
Sbjct: 899 LSAFP-FASGQLPVRYLGFPLLTKQMT 924
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 35.8 bits (81), Expect(3) = 5e-08
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISL-VAG*LNKKL*TDWLSCKLLKNES--- 549
+SW+ + + GLG+RK + W ++L + L + W++ L N S
Sbjct: 124 VSWSTVCLPKAEGGLGVRKFTE----WNTALNLKLIWLLFSNSGSLWVAWHLFHNLSTSV 179
Query: 550 --IWTAQQTRDCSSITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGIL 702
W ++ S R +L+ + LA ++G+G SFW +W P G L
Sbjct: 180 SNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCSIGNGLTASFWADSWTPFGPL 232
Score = 35.0 bits (79), Expect(3) = 5e-08
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PL+ KL W LS+AG+L ++ +V+ G +++ F L GCI + +
Sbjct: 52 PLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVFWMSTFRL---PKGCIREIESMCA 108
Query: 368 KFFTS 382
+F S
Sbjct: 109 RFLWS 113
Score = 32.3 bits (72), Expect(3) = 5e-08
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 111 FPIRSLPIKYLGLPLIPGKLSV 176
FP +LPI+YLGLPL+ KL +
Sbjct: 26 FPFANLPIRYLGLPLMSRKLKI 47
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 36.6 bits (83), Expect(3) = 6e-08
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +1
Query: 382 ISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLL-KNESIWT 558
++W+++ + G+GLR+ + ++ + + L W L K+ S W
Sbjct: 750 VAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWN 809
Query: 559 AQQTRDCSSITRKILKWQELAEPHSKVNLGDGKLVSFWKHNWHPQGILEK 708
+ S + +L+ + +AE + N+G+G+ SFW NW P G L K
Sbjct: 810 QPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIK 859
Score = 34.3 bits (77), Expect(3) = 6e-08
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 30 LLCQCSKASIFFTESVQNTIQLAAIPNFPIRSLPIKYLGLPLIPGKLSV 176
LL +K ++ Q+ A F + SLP++YLGLPL+ KL++
Sbjct: 625 LLMNTNKTQLYHAGLSQSESDSMASYGFKLGSLPVRYLGLPLMSRKLTI 673
Score = 32.0 bits (71), Expect(3) = 6e-08
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 188 PLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVGNNGCIHNYSN*AS 367
PLI + W LS+AG++ ++ +V+ G + + F L + GCI + S
Sbjct: 678 PLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPL---GCIKKIESLCS 734
Query: 368 KFFTSS 385
+F SS
Sbjct: 735 RFLWSS 740
>ref|XP_007214027.1| hypothetical protein PRUPE_ppa016677mg [Prunus persica]
gi|462409892|gb|EMJ15226.1| hypothetical protein
PRUPE_ppa016677mg [Prunus persica]
Length = 1421
Score = 45.1 bits (105), Expect(2) = 7e-08
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Frame = +1
Query: 367 KVLHLISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNE 546
K HL+ W R++KS E+ GLG+ ++++ N+ L WL L+
Sbjct: 1080 KKCHLVRWERVTKSKEEGGLGIGSLRER---------------NEALRAKWLWRFPLETN 1124
Query: 547 SIW----TAQQTRDCSS-ITRKILK------WQELAEPHS------KVNLGDGKLVSFWK 675
S+W ++ D + T++I K W+E+++ ++ + ++G+G+ + FW+
Sbjct: 1125 SLWHRIIKSKYGIDSNGWDTKRIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWE 1184
Query: 676 HNWHPQGILEKSQFLSLTS 732
W +GIL K F L+S
Sbjct: 1185 DLWLKEGIL-KDLFPRLSS 1202
Score = 38.5 bits (88), Expect(2) = 7e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 155 NPRKAFRHNCLPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVG 328
NPR N P++ K+LQ WK CLS G+L +++AVL Y +F + +G
Sbjct: 1004 NPRALNFWN--PVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIG 1059
>ref|XP_007212886.1| hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica]
gi|462408751|gb|EMJ14085.1| hypothetical protein
PRUPE_ppa021750mg, partial [Prunus persica]
Length = 922
Score = 45.1 bits (105), Expect(2) = 7e-08
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Frame = +1
Query: 367 KVLHLISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNE 546
K HL+ W R++KS E+ GLG+ ++++ N+ L WL L+
Sbjct: 573 KKCHLVRWERVTKSKEEGGLGIGSLRER---------------NEALRAKWLWRFPLETN 617
Query: 547 SIW----TAQQTRDCSS-ITRKILK------WQELAEPHS------KVNLGDGKLVSFWK 675
S+W ++ D + T++I K W+E+++ ++ + ++G+G+ + FW+
Sbjct: 618 SLWHRIIKSKYGIDSNGWDTKRIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWE 677
Query: 676 HNWHPQGILEKSQFLSLTS 732
W +GIL K F L+S
Sbjct: 678 DLWLKEGIL-KDLFPRLSS 695
Score = 38.5 bits (88), Expect(2) = 7e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 155 NPRKAFRHNCLPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVG 328
NPR N P++ K+LQ WK CLS G+L +++AVL Y +F + +G
Sbjct: 497 NPRALNFWN--PVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIG 552
>ref|XP_007224309.1| hypothetical protein PRUPE_ppa019854mg [Prunus persica]
gi|462421245|gb|EMJ25508.1| hypothetical protein
PRUPE_ppa019854mg [Prunus persica]
Length = 469
Score = 45.1 bits (105), Expect(2) = 7e-08
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Frame = +1
Query: 367 KVLHLISWARMSKSMEDAGLGLRKIKDKV*SWCPQISLVAG*LNKKL*TDWLSCKLLKNE 546
K HL+ W R++KS E+ GLG+ ++++ N+ L WL L+
Sbjct: 87 KKCHLVRWERVTKSKEEGGLGIGSLRER---------------NEALRAKWLWRFPLETN 131
Query: 547 SIW----TAQQTRDCSS-ITRKILK------WQELAEPHS------KVNLGDGKLVSFWK 675
S+W ++ D + T++I K W+E+++ ++ + ++G+G+ + FW+
Sbjct: 132 SLWHRIIKSKYGIDSNGWDTKRIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWE 191
Query: 676 HNWHPQGILEKSQFLSLTS 732
W +GIL K F L+S
Sbjct: 192 DLWLKEGIL-KDLFPRLSS 209
Score = 38.5 bits (88), Expect(2) = 7e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 155 NPRKAFRHNCLPLIHHFGKKLQGWKALCLSYAGQLLMVKAVLQGSLIYCTGIFGLYVG 328
NPR N P++ K+LQ WK CLS G+L +++AVL Y +F + +G
Sbjct: 11 NPRALNFWN--PVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIG 66