BLASTX nr result
ID: Sinomenium21_contig00039854
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00039854
(489 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007048817.1| DNA repair and recombination protein pif1, p... 48 1e-12
ref|XP_004306279.1| PREDICTED: DNA repair and recombination prot... 45 2e-11
ref|XP_006380622.1| hypothetical protein POPTR_0007s09900g [Popu... 48 3e-10
ref|XP_006586570.1| PREDICTED: ATP-dependent DNA helicase PIF1-l... 68 1e-09
ref|XP_007216310.1| hypothetical protein PRUPE_ppa019701mg [Prun... 42 1e-07
ref|XP_002975258.1| hypothetical protein SELMODRAFT_451567 [Sela... 45 8e-07
ref|XP_002987435.1| hypothetical protein SELMODRAFT_451566 [Sela... 45 8e-07
>ref|XP_007048817.1| DNA repair and recombination protein pif1, putative [Theobroma
cacao] gi|508701078|gb|EOX92974.1| DNA repair and
recombination protein pif1, putative [Theobroma cacao]
Length = 475
Score = 47.8 bits (112), Expect(4) = 1e-12
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Frame = +3
Query: 237 IEEQRWWVKPGK*EVMEGETAIATRKQVPLMPAWAVT--------LDRLHTNLSRAFGCG 392
IE Q+W+V M G +A R Q+PL+ AWA++ LDR+HT+LSRAFG G
Sbjct: 384 IEPQKWYV-------MVGSRPVAWRLQLPLVLAWALSIHKCQGMSLDRIHTDLSRAFGYG 436
Query: 393 NEIIA 407
+A
Sbjct: 437 MVYVA 441
Score = 33.5 bits (75), Expect(4) = 1e-12
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +1
Query: 52 LWIKGDELRIFLGARVMLIKNTDLDSGLVDGATG 153
L + D+L + GARVMLIKN ++ LV+GATG
Sbjct: 318 LGLAPDKLVLCKGARVMLIKNLNVMHRLVNGATG 351
Score = 28.5 bits (62), Expect(4) = 1e-12
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 152 GTVNGFVERKSKAVKSICYRGLLPIVRFN*GAEMV 256
G V GF E K V S LLP+V+F+ G EMV
Sbjct: 351 GIVTGFTETKGGTVLSP--DNLLPVVKFDSGPEMV 383
Score = 27.3 bits (59), Expect(4) = 1e-12
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 3 NDERLRSLGRDVVKYEALDKGR 68
N+E++++L + V YEA+D+G+
Sbjct: 288 NEEKMKALSEEQVIYEAIDRGK 309
>ref|XP_004306279.1| PREDICTED: DNA repair and recombination protein pif1,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 515
Score = 45.4 bits (106), Expect(4) = 2e-11
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Frame = +3
Query: 258 VKPGK*EVMEGETAIATRKQVPLMPAWA--------VTLDRLHTNLSRAFGCGNEIIA 407
++P V EG+ +A RKQVPL+ AWA +TLD LHT+LS+AF G +A
Sbjct: 384 IEPETWAVTEGDKVVAERKQVPLILAWASSIHKCQGMTLDCLHTDLSKAFENGMVYVA 441
Score = 32.7 bits (73), Expect(4) = 2e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 152 GTVNGFVERKSKAVKSICYRGLLPIVRFN*GAEMV 256
GTV GF K+K + +C+ LPIV+F+ G EM+
Sbjct: 351 GTVQGFYVPKNKDIAGVCH--ALPIVKFDSGPEML 383
Score = 30.8 bits (68), Expect(4) = 2e-11
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 70 ELRIFLGARVMLIKNTDLDSGLVDGATG 153
E+ + ARVML+KN + GLV+GATG
Sbjct: 324 EVTLCKDARVMLVKNLNTWRGLVNGATG 351
Score = 23.9 bits (50), Expect(4) = 2e-11
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 3 NDERLRSLGRDVVKYEALDKG 65
N RL SLG + V Y A+D G
Sbjct: 288 NASRLVSLGNEFVIYTAIDSG 308
>ref|XP_006380622.1| hypothetical protein POPTR_0007s09900g [Populus trichocarpa]
gi|550334512|gb|ERP58419.1| hypothetical protein
POPTR_0007s09900g [Populus trichocarpa]
Length = 540
Score = 48.1 bits (113), Expect(3) = 3e-10
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Frame = +3
Query: 258 VKPGK*EVMEGETAIATRKQVPLMPAWAV--------TLDRLHTNLSRAFGCGNEIIA 407
++P K E+ EG+ +A R Q+PL+ AWA+ TLD T+LSRAFG G +A
Sbjct: 432 IEPQKFEIFEGDIVVAWRYQIPLILAWAISIHKCQGMTLDHAQTDLSRAFGYGMVYVA 489
Score = 33.9 bits (76), Expect(3) = 3e-10
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 67 DELRIFLGARVMLIKNTDLDSGLVDGATGDC*WFCGAKEQGSEE 198
D+L + +GARVMLI N +++ L +GATG F +++ + +
Sbjct: 371 DQLVLCVGARVMLIMNLNIERNLCNGATGTVTGFVPVEDKNARK 414
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 3 NDERLRSLGRDVVKYEALDKG 65
N+ER++SLG V Y A D G
Sbjct: 336 NEERMKSLGESTVTYAAADSG 356
>ref|XP_006586570.1| PREDICTED: ATP-dependent DNA helicase PIF1-like [Glycine max]
Length = 516
Score = 68.2 bits (165), Expect = 1e-09
Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 27/162 (16%)
Frame = +3
Query: 3 NDERLRSLGRDVVKYEALD--KGR*VANL-FG--------CEG-------DVNKEHGFR* 128
NDERLRSL +DVV Y A+D KG NL +G CEG +++ EHG
Sbjct: 297 NDERLRSLQKDVVVYRAVDSGKGHWKGNLRYGIVPDEISLCEGARVMLVKNLDTEHGLVN 356
Query: 129 WFG*WRDGGLLMVLWSERARQ*RVSVTEAYCLL*GSIEEQRWW-VKPGK*EVMEGETAIA 305
G ++ WS + + L + ++ +KP K +M+G +A
Sbjct: 357 G----ATGVVVGFSWSLGEEEHLSGICNDKVLPVVKFDGGKFLTIKPAKWHLMDGPEVVA 412
Query: 306 TRKQVPLMPAWA--------VTLDRLHTNLSRAFGCGNEIIA 407
RKQ+PL+ AWA +TL+R+HT+LSRAFGCG +A
Sbjct: 413 CRKQIPLILAWAMSIHKCQGMTLERVHTDLSRAFGCGMVYVA 454
>ref|XP_007216310.1| hypothetical protein PRUPE_ppa019701mg [Prunus persica]
gi|462412460|gb|EMJ17509.1| hypothetical protein
PRUPE_ppa019701mg [Prunus persica]
Length = 549
Score = 42.0 bits (97), Expect(2) = 1e-07
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 8/58 (13%)
Frame = +3
Query: 258 VKPGK*EVMEGETAIATRKQVPLMPAWA--------VTLDRLHTNLSRAFGCGNEIIA 407
++P EG++ +A R+Q+PL+ AWA +TLDRLHT+LSRAF G +A
Sbjct: 387 IEPNTWTANEGDS-VAKREQLPLILAWASSIHKCQGMTLDRLHTDLSRAFENGMVYVA 443
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 152 GTVNGFVERKSKAVKSICYRGLLPIVRFN*GAEM 253
GTV GF E + V IC GLLP+VRF+ G EM
Sbjct: 352 GTVTGFYESEDVGVTRICDDGLLPVVRFDSGLEM 385
>ref|XP_002975258.1| hypothetical protein SELMODRAFT_451567 [Selaginella moellendorffii]
gi|300156832|gb|EFJ23459.1| hypothetical protein
SELMODRAFT_451567 [Selaginella moellendorffii]
Length = 580
Score = 44.7 bits (104), Expect(2) = 8e-07
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +3
Query: 252 WWVKPGK*EVMEGETAIATRKQVPLMPAWA--------VTLDRLHTNLSRAFGCGNEIIA 407
W ++P VMEGE +A R Q+PL+ AWA +TLD + T+LSR F G +A
Sbjct: 485 WIIRPEAWSVMEGEVEVAKRLQLPLILAWALSVHKCQGMTLDCVETDLSRTFEYGMVYVA 544
Score = 33.9 bits (76), Expect(2) = 8e-07
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 70 ELRIFLGARVMLIKNTDLDSGLVDGATG 153
E+ + +GA+VMLIKN + GLV+GA G
Sbjct: 424 EITLAIGAQVMLIKNLGTEQGLVNGARG 451
>ref|XP_002987435.1| hypothetical protein SELMODRAFT_451566 [Selaginella moellendorffii]
gi|300144841|gb|EFJ11522.1| hypothetical protein
SELMODRAFT_451566 [Selaginella moellendorffii]
Length = 580
Score = 44.7 bits (104), Expect(2) = 8e-07
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +3
Query: 252 WWVKPGK*EVMEGETAIATRKQVPLMPAWA--------VTLDRLHTNLSRAFGCGNEIIA 407
W ++P VMEGE +A R Q+PL+ AWA +TLD + T+LSR F G +A
Sbjct: 485 WIIRPEAWSVMEGEVEVAKRLQLPLILAWALSVHKCQGMTLDCVETDLSRTFEYGMVYVA 544
Score = 33.9 bits (76), Expect(2) = 8e-07
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 70 ELRIFLGARVMLIKNTDLDSGLVDGATG 153
E+ + +GA+VMLIKN + GLV+GA G
Sbjct: 424 EITLAIGAQVMLIKNLGTEQGLVNGARG 451