BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00039472
         (422 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...   110   5e-34
ref|XP_007020088.1| Pentatricopeptide repeat-containing protein,...   112   7e-23
ref|XP_002882856.1| pentatricopeptide repeat-containing protein ...   110   2e-22
ref|XP_007226246.1| hypothetical protein PRUPE_ppa017671mg [Prun...   109   3e-22
ref|NP_188004.1| pentatricopeptide repeat-containing protein [Ar...   108   8e-22
ref|XP_006407155.1| hypothetical protein EUTSA_v10020137mg [Eutr...   105   8e-21
ref|XP_006297048.1| hypothetical protein CARUB_v10013045mg [Caps...   105   8e-21
ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    93   4e-17
ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat...    93   4e-17
ref|XP_006493918.1| PREDICTED: putative pentatricopeptide repeat...    92   7e-17
ref|XP_002301427.2| hypothetical protein POPTR_0002s17640g [Popu...    76   8e-17
ref|XP_007028824.1| Mitochondrial RNAediting factor 1 [Theobroma...    92   1e-16
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,...    92   1e-16
ref|XP_006349560.1| PREDICTED: putative pentatricopeptide repeat...    91   1e-16
ref|NP_200075.1| pentatricopeptide repeat protein MEF1 [Arabidop...    91   1e-16
gb|AEP33762.1| organelle transcript processing 82, partial [Hesp...    81   2e-16
ref|XP_002322703.2| hypothetical protein POPTR_0016s05390g [Popu...    90   3e-16
ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    90   3e-16
ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vit...    90   3e-16
ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group] g...    90   3e-16

>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  110 bits (276), Expect(2) = 5e-34
 Identities = 52/92 (56%), Positives = 69/92 (75%)
 Frame = +3

Query: 141 PSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKS 320
           P + L  N L MYCKCGE + A  LFDRMPKR+VVSW+SLI GY+Q+G Y + + +F ++
Sbjct: 52  PCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEA 111

Query: 321 RMDQIKLDKFTYASVLSVCAQTGDLELGMLIH 416
           RM  ++LDKFT+++ LSVC +T DL LG LIH
Sbjct: 112 RMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 143



 Score = 59.3 bits (142), Expect(2) = 5e-34
 Identities = 29/52 (55%), Positives = 36/52 (69%)
 Frame = +1

Query: 4   NSLQFHLGTTISLDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFL 159
           N   ++LG  + LDS TYT L++ S  +GSLIHGKL H H+IKT F  CLFL
Sbjct: 7   NPQPYYLG--LPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFL 56



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MYCKCG I++A  +F+   + D VSW+SLI GY ++GS  + + +  K     + L+ 
Sbjct: 162 IDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNS 221

Query: 348 FTYASVLSVCAQ--TGDLELGMLIHG 419
           +   S L  C    +  +E G ++HG
Sbjct: 222 YALGSALKACGSNFSSSIECGKMLHG 247


>ref|XP_007020088.1| Pentatricopeptide repeat-containing protein, putative isoform 1
           [Theobroma cacao] gi|590603767|ref|XP_007020089.1|
           Pentatricopeptide repeat-containing protein, putative
           isoform 1 [Theobroma cacao] gi|508725416|gb|EOY17313.1|
           Pentatricopeptide repeat-containing protein, putative
           isoform 1 [Theobroma cacao] gi|508725417|gb|EOY17314.1|
           Pentatricopeptide repeat-containing protein, putative
           isoform 1 [Theobroma cacao]
          Length = 669

 Score =  112 bits (279), Expect = 7e-23
 Identities = 55/104 (52%), Positives = 75/104 (72%)
 Frame = +3

Query: 108 ACTHPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGS 287
           A TH +     P + L  N L+MYCK GE++ A  LFDRM K ++VS++SLI GY+Q+G+
Sbjct: 38  AHTHIIKSAFKPCLFLLNNLLNMYCKAGEMDVAHRLFDRMSKPNLVSYNSLISGYTQMGA 97

Query: 288 YTKAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           + KA+++F ++R   +KLDKFTYA  L+ CAQTG LELG LIHG
Sbjct: 98  FDKAMQVFLEARKSCLKLDKFTYAGALNACAQTGGLELGKLIHG 141



 Score = 55.1 bits (131), Expect(2) = 3e-08
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MYCKC  ++ A +LF+   + D VSW++LI GY  +    + +++      + + L+ 
Sbjct: 159 IDMYCKCECLDHARFLFENSKELDEVSWNTLIAGYVAMNGKEEMLKLLINMHRNGLNLNS 218

Query: 348 FTYASVLSVCAQTGDL--ELGMLIHG 419
           +T  SVL  C    D+    G ++HG
Sbjct: 219 YTMGSVLKACCTIIDIGRTYGEMLHG 244



 Score = 28.5 bits (62), Expect(2) = 3e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 34  ISLDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFL 159
           + LD  TY   L + A +G L  GKL+H  ++ +   +  FL
Sbjct: 113 LKLDKFTYAGALNACAQTGGLELGKLIHGLIVVSGLVEKTFL 154



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
 Frame = +3

Query: 123 LDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTK-- 296
           LD DI    +L    L MY K GE+  A  +F+ MP R++V ++++I G+ +  S +K  
Sbjct: 251 LDVDIVVGTAL----LDMYAKKGEVNSAVKIFETMPDRNIVMYNAMISGFIEAESISKEC 306

Query: 297 ---AIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHGR 422
              A  +F++ +   +K  KFT++S+L  C    D + G  IH +
Sbjct: 307 ANEAFSLFSELKRQGLKPSKFTFSSMLKACYAVEDFDHGKQIHAQ 351



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 33/105 (31%), Positives = 52/105 (49%)
 Frame = +3

Query: 105 QACTHPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVG 284
           Q C + L  D F   +L    + +Y   G  E +   F   PKRD+V W+S+I G+ Q G
Sbjct: 351 QICKYNLQCDEFIGSAL----IELYSLMGSSEDSLKCFRSTPKRDIVLWTSMIAGHVQNG 406

Query: 285 SYTKAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
            +  A+ +F +      + D+F  +S+ S CA +    LG  +HG
Sbjct: 407 QFESALNLFHELLASGGRPDEFIISSMFSACADSATASLGEQVHG 451


>ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328696|gb|EFH59115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 753

 Score =  110 bits (276), Expect = 2e-22
 Identities = 51/101 (50%), Positives = 72/101 (71%)
 Frame = +3

Query: 117 HPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTK 296
           H +   + P + L  N L+MYCKC E+ FA  LFDRMP+R+++S++SLI GY+QVG Y +
Sbjct: 73  HMVKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQ 132

Query: 297 AIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           A+E+F ++R D +KLDKFTYA  L  C +  DL+ G L+HG
Sbjct: 133 AMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHG 173



 Score = 68.9 bits (167), Expect(2) = 1e-10
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG+++ A  LFDR  +RD VSW+SLI GY +VG+  + + + AK     +KL  
Sbjct: 191 IDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTT 250

Query: 348 FTYASVLSVCA---QTGDLELGMLIH 416
           +   SVL  C      G +E GM IH
Sbjct: 251 YALGSVLKACCINLNEGLMEKGMAIH 276



 Score = 22.7 bits (47), Expect(2) = 1e-10
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 34  ISLDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFL 159
           + LD  TY   L        L  GKL+H  ++     Q +FL
Sbjct: 145 LKLDKFTYAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFL 186


>ref|XP_007226246.1| hypothetical protein PRUPE_ppa017671mg [Prunus persica]
           gi|462423182|gb|EMJ27445.1| hypothetical protein
           PRUPE_ppa017671mg [Prunus persica]
          Length = 752

 Score =  109 bits (273), Expect = 3e-22
 Identities = 53/93 (56%), Positives = 72/93 (77%)
 Frame = +3

Query: 141 PSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKS 320
           P + L  N L+MYCK GE++ A  LFD+MPKR+V+S++SLI GY+QVG + KA+ +F ++
Sbjct: 8   PCLFLLNNLLNMYCKRGELDSACNLFDKMPKRNVISYNSLISGYTQVGLFDKAMGVFNEA 67

Query: 321 RMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           R+  +KLDKFTYAS LSVC QT  +ELG L+HG
Sbjct: 68  RVTGLKLDKFTYASALSVCGQTCYIELGKLVHG 100



 Score = 55.5 bits (132), Expect(2) = 3e-06
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG ++ A  LF+     D VSW+SLI  Y+++G+  + +    K       L+ 
Sbjct: 118 MDMYSKCGWVDHAKILFENSDNLDDVSWNSLIASYARIGANEETLRTLVKMHQCGFSLNT 177

Query: 348 FTYASVLSVCAQTGDLE--LGMLIHG 419
           +T  S L  C +  D     G L+HG
Sbjct: 178 YTLGSALKACCKIFDNSELFGKLLHG 203



 Score = 21.2 bits (43), Expect(2) = 3e-06
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 28  TTISLDSPTYTNLLKSSANSGSLIHGKLVH 117
           T + LD  TY + L     +  +  GKLVH
Sbjct: 70  TGLKLDKFTYASALSVCGQTCYIELGKLVH 99


>ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g13880 gi|9294611|dbj|BAB02912.1| probable
           selenium-binding protein [Arabidopsis thaliana]
           gi|332641909|gb|AEE75430.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  108 bits (270), Expect = 8e-22
 Identities = 50/101 (49%), Positives = 72/101 (71%)
 Frame = +3

Query: 117 HPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTK 296
           H +   + P + L  N L+MYCKC E+ FA  LFDRMP+R+++S++SLI GY+Q+G Y +
Sbjct: 72  HMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQ 131

Query: 297 AIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           A+E+F ++R   +KLDKFTYA  L  C +  DL+LG L+HG
Sbjct: 132 AMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHG 172



 Score = 70.9 bits (172), Expect(2) = 1e-10
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG+++ A  LFDR  +RD VSW+SLI GY +VG+  + + + AK   D + L  
Sbjct: 190 IDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTT 249

Query: 348 FTYASVLSVCA---QTGDLELGMLIH 416
           +   SVL  C      G +E GM IH
Sbjct: 250 YALGSVLKACCINLNEGFIEKGMAIH 275



 Score = 20.4 bits (41), Expect(2) = 1e-10
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 34  ISLDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFL 159
           + LD  TY   L        L  G+L+H  ++     Q +FL
Sbjct: 144 LKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185


>ref|XP_006407155.1| hypothetical protein EUTSA_v10020137mg [Eutrema salsugineum]
           gi|557108301|gb|ESQ48608.1| hypothetical protein
           EUTSA_v10020137mg [Eutrema salsugineum]
          Length = 751

 Score =  105 bits (261), Expect = 8e-21
 Identities = 49/101 (48%), Positives = 71/101 (70%)
 Frame = +3

Query: 117 HPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTK 296
           H +   I P + L  N L+MYCKC E+ FA  LFD+MP+++++S++SLI GYSQ+G + K
Sbjct: 71  HMIKSSINPCLHLLNNLLNMYCKCRELGFARQLFDQMPEQNIISFNSLISGYSQMGDHEK 130

Query: 297 AIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           A+++F ++R   +KLDKFTYA  L  C +  DL LG L+HG
Sbjct: 131 AMDLFLEARDYNLKLDKFTYAGALGFCGERCDLGLGKLLHG 171



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           ++MYCKCG+++ A  LFDR  ++D  SW+SLI GY +VG+  + + +  K     IKL  
Sbjct: 189 INMYCKCGKVDQAMSLFDRSDEKDQASWNSLISGYVRVGAAEETLNMLVKMHRGGIKLTT 248

Query: 348 FTYASVLSVCA---QTGDLELGMLIH 416
           +   SVL  C      G +E GM IH
Sbjct: 249 YALGSVLKACCINLNEGLMENGMAIH 274


>ref|XP_006297048.1| hypothetical protein CARUB_v10013045mg [Capsella rubella]
           gi|482565757|gb|EOA29946.1| hypothetical protein
           CARUB_v10013045mg [Capsella rubella]
          Length = 745

 Score =  105 bits (261), Expect = 8e-21
 Identities = 48/101 (47%), Positives = 71/101 (70%)
 Frame = +3

Query: 117 HPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTK 296
           H +   + P + L  N L+MYCKC E+ FA  LFDRMP+R+++S++SLI GY+Q+G Y +
Sbjct: 72  HMIKSSLKPCLYLLNNVLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQ 131

Query: 297 AIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           A+++F ++R   +KLDKFTYA  L  C +  D +LG L+HG
Sbjct: 132 AMKLFLEARHVNLKLDKFTYAGALGFCGERCDRDLGQLLHG 172



 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG ++ A  LFDR  +RD VSW+SLI GY +VG   + + + AK   D + L  
Sbjct: 190 IDMYSKCGNLDQAMSLFDRCNERDQVSWNSLISGYVRVGVAEEPLNLLAKMHRDGLNLTT 249

Query: 348 FTYASVLSVCA---QTGDLELGMLIH 416
           +   SVL  C      G +  GM IH
Sbjct: 250 YALGSVLKACCINLNEGLMGKGMAIH 275


>ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 44/96 (45%), Positives = 67/96 (69%)
 Frame = +3

Query: 132 DIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIF 311
           D+F   SL    + MY KCGEI  A +LFD MP+R+VVSWS +IYGY+Q+    +A+ +F
Sbjct: 160 DVFVGSSL----VDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 312 AKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
            ++ ++ + ++ FT++SV+ VC+ +  LELG LIHG
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251


>ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 44/96 (45%), Positives = 67/96 (69%)
 Frame = +3

Query: 132 DIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIF 311
           D+F   SL    + MY KCGEI  A +LFD MP+R+VVSWS +IYGY+Q+    +A+ +F
Sbjct: 160 DVFVGSSL----VDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 312 AKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
            ++ ++ + ++ FT++SV+ VC+ +  LELG LIHG
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251


>ref|XP_006493918.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Citrus sinensis]
          Length = 610

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 44/98 (44%), Positives = 67/98 (68%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F + SL    L MY KCG+++ A  +FD MP+R+VVSW+ +IYGY+Q G   +A+ 
Sbjct: 170 DFDVFVNSSL----LDMYAKCGQLKTARKVFDEMPERNVVSWTGMIYGYAQSGETGEALS 225

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F ++  + + ++ FT++SVL+VC  T  LELG  IHG
Sbjct: 226 LFKQALYENLDVNDFTFSSVLNVCGNTTVLELGKQIHG 263


>ref|XP_002301427.2| hypothetical protein POPTR_0002s17640g [Populus trichocarpa]
           gi|550345235|gb|EEE80700.2| hypothetical protein
           POPTR_0002s17640g [Populus trichocarpa]
          Length = 514

 Score = 75.9 bits (185), Expect(2) = 8e-17
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
 Frame = +3

Query: 123 LDQDIFPSMS---LPANN--LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGS 287
           L + +F  M+   +P  N  ++ Y + G++E A  LF  MP R VVSW+++I GYSQ G 
Sbjct: 135 LARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGM 194

Query: 288 YTKAIEIFAKSRMD-QIKLDKFTYASVLSVCAQTGDLELG 404
           YTKA+E+F K   D +++ ++ T ASV S CA+ G LE+G
Sbjct: 195 YTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG 234



 Score = 36.6 bits (83), Expect(2) = 8e-17
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 52  TYTNLLKSSANSGSLIHGKLVHTHLIKTSF 141
           T+T L  + A+  SL+HGK++HTH IK+ F
Sbjct: 84  TFTFLFPACASFYSLLHGKVIHTHFIKSGF 113


>ref|XP_007028824.1| Mitochondrial RNAediting factor 1 [Theobroma cacao]
           gi|508717429|gb|EOY09326.1| Mitochondrial RNAediting
           factor 1 [Theobroma cacao]
          Length = 595

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 44/98 (44%), Positives = 67/98 (68%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F + SL    + MY KCG+I  A  +FD MP+R+VVSW+ +IYGY+Q+G Y +A+ 
Sbjct: 155 DMDVFVASSL----VDMYGKCGKINVARKVFDEMPERNVVSWTGMIYGYAQLGEYEEALM 210

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F ++   ++ ++ FT++SVL VCA +  LELG   HG
Sbjct: 211 LFKQALYRRLDVNDFTFSSVLQVCANSTLLELGKQTHG 248


>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 793

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 49/104 (47%), Positives = 66/104 (63%)
 Frame = +3

Query: 108 ACTHPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGS 287
           A  H +     P + L  N L++Y K GE+  A  LFDRM +R V+S++ LI GY  +G 
Sbjct: 31  AHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGF 90

Query: 288 YTKAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           Y KAI +F+++RM  +KLDKF+YA VLS C Q  D  LG +IHG
Sbjct: 91  YHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHG 134



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/70 (40%), Positives = 43/70 (61%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MYCKC  I+ A  LF+   + D VSW+SLI GY++VG+Y + +++  K     ++L+ 
Sbjct: 152 IDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNA 211

Query: 348 FTYASVLSVC 377
           FT  S L  C
Sbjct: 212 FTLGSALKSC 221



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/103 (31%), Positives = 50/103 (48%)
 Frame = +3

Query: 111 CTHPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSY 290
           C H +  D F   +L    + +Y   G  E     F+  PK D+VSW+++I GY+Q G +
Sbjct: 346 CKHNIQSDEFIGSTL----IELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQF 401

Query: 291 TKAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
             A+ +F +      K D+F   ++LS CA       G  +HG
Sbjct: 402 ESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHG 444



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +1

Query: 40  LDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFL 159
           LDS  YT L++ S+ SGS IHGKL H H+IKT+F+ CLFL
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFL 46


>ref|XP_006349560.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Solanum tuberosum]
          Length = 596

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 44/98 (44%), Positives = 66/98 (67%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F   SL    + MY KCG IE A  +FD+MP+R+VVSWS +IYGY+Q+    +A+ 
Sbjct: 156 DSDVFVGSSL----VDMYAKCGNIEIARKVFDQMPERNVVSWSGMIYGYAQMAEDEEALR 211

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F  + ++ + ++ FT++SV+ VCA +  LELG  IHG
Sbjct: 212 LFKLALVEGLDVNDFTFSSVIRVCANSTLLELGKQIHG 249


>ref|NP_200075.1| pentatricopeptide repeat protein MEF1 [Arabidopsis thaliana]
           gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g52630 gi|8953718|dbj|BAA98081.1|
           selenium-binding protein-like [Arabidopsis thaliana]
           gi|332008860|gb|AED96243.1| pentatricopeptide repeat
           protein MEF1 [Arabidopsis thaliana]
          Length = 588

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 42/98 (42%), Positives = 68/98 (69%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F   SL    + MY KCGEI +A  +FD MP+R+VV+WS ++YGY+Q+G   +A+ 
Sbjct: 148 DADVFVGSSL----VDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALW 203

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F ++  + + ++ ++++SV+SVCA +  LELG  IHG
Sbjct: 204 LFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHG 241



 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
 Frame = +3

Query: 138 FPSMSLPANNL-SMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFA 314
           F S S   ++L S+Y KCG  E A+ +F+ +P +++  W++++  Y+Q     K IE+F 
Sbjct: 248 FDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFK 307

Query: 315 KSRMDQIKLDKFTYASVLSVCAQTGDLELG 404
           + ++  +K +  T+ +VL+ C+  G ++ G
Sbjct: 308 RMKLSGMKPNFITFLNVLNACSHAGLVDEG 337


>gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score = 80.9 bits (198), Expect(2) = 2e-16
 Identities = 36/80 (45%), Positives = 55/80 (68%)
 Frame = +3

Query: 177 YCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDKFTY 356
           Y   G IE A  +FD +P +DVVSW+++I GY++ G+Y KA+E+F +     +K D+ T 
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 357 ASVLSVCAQTGDLELGMLIH 416
           A+V+S CAQ+G +ELG  +H
Sbjct: 211 ATVVSACAQSGSIELGRQVH 230



 Score = 30.0 bits (66), Expect(2) = 2e-16
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  TYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFLQT 165
           T+  LLKS A S +   G+ +H H++K  F   L++ T
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHT 114



 Score = 62.4 bits (150), Expect(2) = 6e-09
 Identities = 28/83 (33%), Positives = 48/83 (57%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + +Y KCGE+E A  L + +  +DV+SW++LI GY+ +  Y +A+ +F +        + 
Sbjct: 249 IDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 308

Query: 348 FTYASVLSVCAQTGDLELGMLIH 416
            T  S+L  CA  G +++G  IH
Sbjct: 309 VTMLSILPACAHLGAIDIGRWIH 331



 Score = 23.5 bits (49), Expect(2) = 6e-09
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 28  TTISLDSPTYTNLLKSSANSGSLIHGKLVHT 120
           T +  D  T   ++ + A SGS+  G+ VH+
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELGRQVHS 231



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +3

Query: 150 SLPANNLSMYCKCGEIEFAWYLFDRMP-KRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRM 326
           SL  + + MY KCG+I+ A  + D     R + +W+++I+G++  G    A +IF++ R 
Sbjct: 348 SLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRK 407

Query: 327 DQIKLDKFTYASVLSVCAQTGDLELG 404
           + I+ D  T+  +LS C+ +G L+LG
Sbjct: 408 NGIEPDDITFVGLLSACSHSGMLDLG 433


>ref|XP_002322703.2| hypothetical protein POPTR_0016s05390g [Populus trichocarpa]
           gi|550320891|gb|EEF04464.2| hypothetical protein
           POPTR_0016s05390g [Populus trichocarpa]
          Length = 627

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 43/98 (43%), Positives = 66/98 (67%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F   SL    + MY KCG+I+ A  +FD MP+R+VVSWS +IYGY+Q+G + +A+ 
Sbjct: 187 DVDVFVGSSL----VDMYAKCGDIKEARNVFDEMPQRNVVSWSGMIYGYTQLGEHEEAMR 242

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F ++ ++ + ++ FT +SV+ VC     LELG  IHG
Sbjct: 243 LFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHG 280


>ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 43/102 (42%), Positives = 66/102 (64%)
 Frame = +3

Query: 114 THPLDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYT 293
           +H +     P + L  N L+MYCKCG+   A  LFD+M K ++V+++SLI GY Q+ +  
Sbjct: 83  SHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLD 142

Query: 294 KAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           K + +F K+R   +KLDK+T A  L+ C+Q+G+L  G +IHG
Sbjct: 143 KVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHG 184



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG++++A  LFD   K D VSW+SLI GY Q G Y + + I  K   + +  + 
Sbjct: 202 IDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNT 261

Query: 348 FTYASVLSVCAQ--TGDLELGMLIH 416
           +T  S L  C+    G    G ++H
Sbjct: 262 YTLGSALKACSSNFNGCKMFGTMLH 286



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +1

Query: 28  TTISLDSPTYTNLLKSSANSGSLIHGKLVHTHLIKTSFHQCLFLQ 162
           +T  L+S  Y  L++S+  +G L HGKLVH+H+IKTSF  CLFLQ
Sbjct: 53  STFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQ 97


>ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 44/98 (44%), Positives = 65/98 (66%)
 Frame = +3

Query: 126 DQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIE 305
           D D+F   S+    + MY KCGEI  A  +FD MP R+VVSWS +IYGYSQ+G   +A+ 
Sbjct: 42  DCDVFVGSSM----VDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALR 97

Query: 306 IFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           +F ++ ++ + ++ FT++SV+ VC  +  LELG  IHG
Sbjct: 98  LFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQIHG 135


>ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
           gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa
           Japonica Group]
          Length = 1632

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 41/93 (44%), Positives = 62/93 (66%)
 Frame = +3

Query: 141 PSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKS 320
           P + L  N L++YC+CG++  A  LFD MP+RD VSW++LI GYS +GS   A++ F  +
Sbjct: 8   PGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDA 67

Query: 321 RMDQIKLDKFTYASVLSVCAQTGDLELGMLIHG 419
           R     +D+FT+A+ L+ CA+ GD   G ++HG
Sbjct: 68  RASGDGVDRFTFAAALASCARVGDWRDGRVVHG 100



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 123 LDQDIFPSMSLPANNLSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGS----- 287
           LD D+F   ++    + MY K G +E A  +FD +P ++VV ++++I G++++G+     
Sbjct: 209 LDLDVFVGSAM----VDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPE 264

Query: 288 -YTKAIEIFAKSRMDQIKLDKFTYASVLSVCAQTGDLELGMLIH 416
              +A+ +F+     +IK  KFT+ SVL VC  T  +  G  IH
Sbjct: 265 IRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIH 308



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +3

Query: 168 LSMYCKCGEIEFAWYLFDRMPKRDVVSWSSLIYGYSQVGSYTKAIEIFAKSRMDQIKLDK 347
           + MY KCG I+    LFDR  +R   SW+ L+  Y ++G    A+ +        +KLD 
Sbjct: 118 IDMYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDS 177

Query: 348 FTYASVLSVCAQTGDLE 398
           F    +L  C++ GD E
Sbjct: 178 FALGGILKACSELGDSE 194