BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00038310
         (837 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr...    41   1e-06

>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
           domestica]
          Length = 622

 Score = 41.2 bits (95), Expect(2) = 1e-06
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
 Frame = +3

Query: 120 VFD*LEKAYDRLFKDIIWWVFEKK*VLNLHIQLTK*YV**EISIIKTTIRETCVFPIELI 299
           VF  LEKAYDR+ +DIIW + EKK V   +IQ                           I
Sbjct: 305 VFIDLEKAYDRVSRDIIWRILEKKGVRVAYIQ--------------------------AI 338

Query: 300 RDIA**VTNMLNTTIVEIGEFPIPVCLH**STLIPCFLC*SWTD*LNIYMMTFHNENSL- 476
           +D+       + T   +   FPI V LH  S+L P          L +  +T H ++ + 
Sbjct: 339 KDMYEGAKTAVRTYEGQTESFPITVGLHQGSSLSPYLFA------LVMDELTGHIQDDIP 392

Query: 477 -LMMFAI*CCKFKR-----RVKLDVLRETF*YRGFKIFRNKTE--KCNFS 602
             M+FA               KL++ RE    +G  + R+KTE  +C FS
Sbjct: 393 WCMLFAYDIVLIDETQEGVNAKLNLWREVLESKGLCLSRSKTEYMECKFS 442



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +1

Query: 19  NQFAFMHWRS*VKTIYFLRRLLKWHLEKNKELNMFLID*RK 141
           NQF FM  RS ++ IY LRRL++ + +  K+L+M  ID  K
Sbjct: 271 NQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEK 311