BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00037625
         (954 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    67   8e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    65   4e-08
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    64   9e-08

>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 67.4 bits (163), Expect = 8e-09
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 3/184 (1%)
 Frame = +1

Query: 100 EDVFIWFQMENGI---FSTKSASDKVRMHRSGCS*RKLVWKQPSIPLYCLMLWHLFLRKT 270
           +D F+W          FS++   +++R+H       K+VW +  IP + L+ W  FL + 
Sbjct: 93  QDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERL 152

Query: 271 PILS*PFNIGIVSSKNCTLWLAKEENEKHLFFSCTSFAAVRSKMTVRCSSNPSISLKWEM 450
           P        G+    +  L    +E   HLFF C+   A+      +   +P   L    
Sbjct: 153 PTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGL--PA 210

Query: 451 VAKWLLKIDDLDKVALSTLRLSFQAFNYHIWIERNLRSFQRKACSFDGLVKVISWEVDQK 630
            + W+L++  L   + + L+L  Q+  YH+W ERN R F   + S   L   I   +  +
Sbjct: 211 ASSWILQL-PLRSHSTTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNR 269

Query: 631 LRSF 642
           L SF
Sbjct: 270 LLSF 273


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 65.1 bits (157), Expect = 4e-08
 Identities = 58/184 (31%), Positives = 82/184 (44%), Gaps = 5/184 (2%)
 Frame = +1

Query: 103  DVFIWFQMENGI---FSTKSASDKVRMHRSGCS*RKLVWKQPSIPLYCLMLWHLFLRK-- 267
            D+ +W  ++N     F TK   + VR H+   +  K VW   S P Y  +LW     +  
Sbjct: 1321 DISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLS 1380

Query: 268  TPILS*PFNIGIVSSKNCTLWLAKEENEKHLFFSCTSFAAVRSKMTVRCSSNPSISLKWE 447
            T      +N G + +  CTL    EE   HLFFSC   + V   +T R  S  + S  W 
Sbjct: 1381 TGDRIKAWNSGQLVT--CTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLST-NYSRDWN 1437

Query: 448  MVAKWLLKIDDLDKVALSTLRLSFQAFNYHIWIERNLRSFQRKACSFDGLVKVISWEVDQ 627
             +   LL   +L +  L   R  FQA  YHIW ERN R     +   + L+K+I   V  
Sbjct: 1438 RLFT-LLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRN 1496

Query: 628  KLRS 639
            ++ S
Sbjct: 1497 RISS 1500


>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 63.9 bits (154), Expect = 9e-08
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 3/181 (1%)
 Frame = +1

Query: 100 EDVFIW---FQMENGIFSTKSASDKVRMHRSGCS*RKLVWKQPSIPLYCLMLWHLFLRKT 270
           +D FIW       + IFST   S  +          K VW +  +P +  + W +   + 
Sbjct: 117 DDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRL 176

Query: 271 PILS*PFNIGIVSSKNCTLWLAKEENEKHLFFSCTSFAAVRSKMTVRCSSNPSISLKWEM 450
                  + G+     C L  + +E+  HLFF C    AV    T R +  P   L + +
Sbjct: 177 HTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWRFFTGRANLFPPAQLMYCL 236

Query: 451 VAKWLLKIDDLDKVALSTLRLSFQAFNYHIWIERNLRSFQRKACSFDGLVKVISWEVDQK 630
           +  WLL     DK     +RL+FQA+ Y IW ERNL      A  FD ++K I   +  +
Sbjct: 237 I--WLLN-PSRDKNTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRAR 293

Query: 631 L 633
           L
Sbjct: 294 L 294