BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00036962
         (752 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     315   1e-89
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   240   3e-64
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              221   2e-59
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              218   2e-58
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              217   6e-58
emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]   212   6e-58
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              216   1e-57
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   214   2e-57
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   214   2e-57
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   214   2e-57
gb|AFB73912.1| polyprotein [Citrus sinensis]                          213   2e-57
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   213   3e-57
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   213   3e-57
gb|AFB73911.1| polyprotein [Citrus sinensis]                          211   8e-57
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  214   1e-56
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   214   1e-56
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           211   1e-56
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   211   1e-56
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   223   2e-56
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]   223   2e-56

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  315 bits (806), Expect(2) = 1e-89
 Identities = 148/221 (66%), Positives = 179/221 (80%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            GV +  LEFC++C +GKQ +V+F ++S+E KS G+LDYIH DVWGPS T S+GGARYFV+
Sbjct: 418  GVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVS 477

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D FSRK+W++FM+ K+EVF KF + K EV NQ GRKIK LRSDNGGEY+D KFL+ CK
Sbjct: 478  FIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCK 537

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
             EGITRHFTVKK+PQQNG A+RMNRTLME+ R +R HAGLP  F AEA NHACYL+N+SP
Sbjct: 538  DEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSP 597

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S+ ++FKCAEEV   K VDYS L+VFG  AYA IP DER K
Sbjct: 598  SRAINFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTK 638



 Score = 42.7 bits (99), Expect(2) = 1e-89
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           C+F+GFEKGVKG+KLWD VN+
Sbjct: 646 CLFIGFEKGVKGYKLWDIVNE 666


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  240 bits (613), Expect(2) = 3e-64
 Identities = 118/212 (55%), Positives = 153/212 (72%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G  T KL+FC+ CVMGKQR+V F + S+     G+L+YIH D+WGPSP  S  G RY+VT
Sbjct: 771  GAETGKLKFCETCVMGKQRRVKFSMGSHTTN--GVLEYIHSDLWGPSPVESHSGCRYYVT 828

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D FSRK+WVYF++ K EVF KF + K  VE + G+ +K LR+DNG E+ +  F +FC+
Sbjct: 829  FIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCR 888

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            +EGI RH TV+  PQQNG A+RMN+TL++RARC+R+ AGL   F AEAVN A YLVN+SP
Sbjct: 889  KEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSP 948

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYA 639
            S  +DFK  +EV   K  +YS LK+FG  AYA
Sbjct: 949  STAIDFKTPQEVWSGKPSNYSGLKIFGCPAYA 980



 Score = 32.0 bits (71), Expect(2) = 3e-64
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 690  CIFLGFEKGVKGFKLW 737
            CIFLG+  GVKG++LW
Sbjct: 994  CIFLGYATGVKGYRLW 1009


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  221 bits (564), Expect(2) = 2e-59
 Identities = 115/221 (52%), Positives = 149/221 (67%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ T  L FC+ CV+ KQ ++ F  A    +S  +LD IH DVW  SP  S GGARYFV+
Sbjct: 449  GLKTVNLPFCEHCVISKQHRLKF--ARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVS 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR++WVY +++KS+VF  F   K ++E + G+KIK LR+DNGGEY D +FL FCK
Sbjct: 506  FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL+ER R +   AG+  SF AEAV  ACY++N+SP
Sbjct: 566  QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +D K   E+   K VDYS+L VFG   Y +  + ER K
Sbjct: 626  STAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTK 666



 Score = 34.7 bits (78), Expect(2) = 2e-59
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+   VKG++LWDP
Sbjct: 674 CIFLGYADNVKGYRLWDP 691


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  218 bits (556), Expect(2) = 2e-58
 Identities = 114/221 (51%), Positives = 148/221 (66%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ T  L FC+ CV+ KQ ++ F  A    +S  +LD IH DVW  SP  S GGARYFV+
Sbjct: 449  GLKTVNLPFCEHCVISKQHRLKF--ARVTTRSKHILDLIHSDVW-ESPKLSLGGARYFVS 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR++WVY +++KS+VF  F   K ++E + G+KIK LR+DNGGEY D +FL FCK
Sbjct: 506  FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL+ER R +   A +  SF AEAV  ACY++N+SP
Sbjct: 566  QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +D K   E+   K VDYS+L VFG   Y +  + ER K
Sbjct: 626  STTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTK 666



 Score = 34.7 bits (78), Expect(2) = 2e-58
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+   VKG++LWDP
Sbjct: 674 CIFLGYADNVKGYRLWDP 691


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  217 bits (552), Expect(2) = 6e-58
 Identities = 113/221 (51%), Positives = 147/221 (66%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ T  L FC+ CVM KQ ++ F  A    +S  +LD IH DVW  SP  S GGARYFV+
Sbjct: 449  GLKTVNLPFCEHCVMSKQHRLKF--ARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVS 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR++WVY +++KS+VF  F   K ++E +  +KIK LR+DNGGEY D +FL FCK
Sbjct: 506  FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL+ER R +   AG+  SF AEA   ACY++N+SP
Sbjct: 566  QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +D K   E+   K VDYS+L VFG   Y +  + E+ K
Sbjct: 626  STAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTK 666



 Score = 34.7 bits (78), Expect(2) = 6e-58
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+   VKG++LWDP
Sbjct: 674 CIFLGYADNVKGYRLWDP 691


>emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]
          Length = 798

 Score =  212 bits (539), Expect(2) = 6e-58
 Identities = 110/222 (49%), Positives = 140/222 (63%)
 Frame = +1

Query: 1   KGVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFV 180
           KG+ TCKL+FCK+CV  KQ KV FK A++  K+ G+LDY+H DVWGP             
Sbjct: 272 KGIKTCKLDFCKYCVFRKQNKVQFKTATH--KTEGVLDYVHTDVWGP------------- 316

Query: 181 TFMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFC 360
                    +WVYFMR KS+ FAKF   K + ENQ GRK+K LR DNG +Y DSKF++ C
Sbjct: 317 ---------VWVYFMRHKSKTFAKFKLWKAKAENQTGRKVKCLRLDNGTKYTDSKFMELC 367

Query: 361 KQEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQS 540
           +Q GI       ++  +NG  + MNRT+ ERARCLRL+  L   F  EAVN ACYL+N S
Sbjct: 368 EQHGIRDTLQYARHHIKNGVVETMNRTIAERARCLRLNVDLEKKFWPEAVNMACYLINNS 427

Query: 541 PSKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
           P  +LD K A+EV     +DYS+L+VFG  AY  IPN+E +K
Sbjct: 428 PKAVLDGKVAKEVWTGSPIDYSSLRVFGCPAYVHIPNEEISK 469



 Score = 39.7 bits (91), Expect(2) = 6e-58
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG++K VKGFKLWDP
Sbjct: 477 CIFLGYQKEVKGFKLWDP 494


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  216 bits (549), Expect(2) = 1e-57
 Identities = 113/221 (51%), Positives = 147/221 (66%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+    L FC+ CV+ KQ ++ F  A    +S  +LD IH DVW  SP  S GGARYFV+
Sbjct: 449  GLKAVNLPFCEHCVISKQHRLKF--ARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVS 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR++WVY +++KS+VF  F   K ++E +  +KIK LR+DNGGEY D +FL FCK
Sbjct: 506  FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL+ER R +   AG+  SF AEAV  ACY++N+SP
Sbjct: 566  QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +D K   E+   K VDYS+L VFG   Y +  + ER K
Sbjct: 626  STAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTK 666



 Score = 34.7 bits (78), Expect(2) = 1e-57
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+   VKG++LWDP
Sbjct: 674 CIFLGYADNVKGYRLWDP 691


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  214 bits (546), Expect(2) = 2e-57
 Identities = 105/217 (48%), Positives = 140/217 (64%)
 Frame = +1

Query: 1    KGVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFV 180
            KG  + K++FC+ C+ GK ++V F  + +  K  G LDY+H D+WGPS   S GGARY +
Sbjct: 450  KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK--GTLDYVHADLWGPSKKPSLGGARYML 507

Query: 181  TFMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFC 360
            T +D +SRK+W YF++ K + F  F   K  +E Q  RK+K LR+DNGGE+    F  +C
Sbjct: 508  TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567

Query: 361  KQEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQS 540
            +QEGI RH T+   PQQNG A+RMNRT++ RARC+  HA +   F AEA + ACYL+N+S
Sbjct: 568  RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627

Query: 541  PSKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
            PS  L+ K   EV      DYS LKVFG  AYA + N
Sbjct: 628  PSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664



 Score = 35.4 bits (80), Expect(2) = 2e-57
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           C+FLG+  GVKG+KLW+P
Sbjct: 674 CLFLGYGSGVKGYKLWNP 691


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  214 bits (546), Expect(2) = 2e-57
 Identities = 105/217 (48%), Positives = 140/217 (64%)
 Frame = +1

Query: 1    KGVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFV 180
            KG  + K++FC+ C+ GK ++V F  + +  K  G LDY+H D+WGPS   S GGARY +
Sbjct: 450  KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK--GTLDYVHADLWGPSKKPSLGGARYML 507

Query: 181  TFMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFC 360
            T +D +SRK+W YF++ K + F  F   K  +E Q  RK+K LR+DNGGE+    F  +C
Sbjct: 508  TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567

Query: 361  KQEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQS 540
            +QEGI RH T+   PQQNG A+RMNRT++ RARC+  HA +   F AEA + ACYL+N+S
Sbjct: 568  RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627

Query: 541  PSKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
            PS  L+ K   EV      DYS LKVFG  AYA + N
Sbjct: 628  PSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664



 Score = 35.4 bits (80), Expect(2) = 2e-57
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           C+FLG+  GVKG+KLW+P
Sbjct: 674 CLFLGYGSGVKGYKLWNP 691


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  214 bits (545), Expect(2) = 2e-57
 Identities = 105/217 (48%), Positives = 140/217 (64%)
 Frame = +1

Query: 1    KGVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFV 180
            KG  + K++FC+ C+ GK ++V F  + +  K  G LDY+H D+WGPS   S GGARY +
Sbjct: 450  KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK--GTLDYVHADLWGPSKKPSLGGARYML 507

Query: 181  TFMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFC 360
            T +D +SRK+W YF++ K + F  F   K  +E Q  RK+K LR+DNGGE+    F  +C
Sbjct: 508  TVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567

Query: 361  KQEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQS 540
            +QEGI RH T+   PQQNG A+RMNRT++ RARC+  HA +   F AEA + ACYL+N+S
Sbjct: 568  RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627

Query: 541  PSKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
            PS  L+ K   EV      DYS LKVFG  AYA + N
Sbjct: 628  PSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDN 664



 Score = 35.4 bits (80), Expect(2) = 2e-57
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           C+FLG+  GVKG+KLW+P
Sbjct: 674 CLFLGYGSGVKGYKLWNP 691


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  213 bits (541), Expect(2) = 2e-57
 Identities = 114/221 (51%), Positives = 143/221 (64%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ +  L FC+ CV  KQ ++ F  + +  +S  +LD IH DVW  SP  S GGA+Y VT
Sbjct: 449  GLKSVSLPFCEHCVTSKQHRLKF--SRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVT 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR+ WVY +++KS+VF  F + K  VE + G+KIK LR+DNGGEY DS+FL FCK
Sbjct: 506  FIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL ER R +   AGLP SF AEA   ACY+VN+SP
Sbjct: 566  QEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +  K A E+   K  DYS L  FG   Y +    ER K
Sbjct: 626  STAIGLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTK 666



 Score = 37.0 bits (84), Expect(2) = 2e-57
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+  GVKG++LWDP
Sbjct: 674 CIFLGYADGVKGYRLWDP 691


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  213 bits (542), Expect(2) = 3e-57
 Identities = 103/211 (48%), Positives = 141/211 (66%)
 Frame = +1

Query: 19   KLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAF 198
            KL+FC+ C+ GK ++V F  +++  +  G+LDY+H D+WGP+   S GG RY +T +D +
Sbjct: 671  KLKFCEHCIFGKHKRVKFNTSTHTTE--GILDYVHSDLWGPARKTSFGGTRYMMTIVDDY 728

Query: 199  SRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGIT 378
            SRK+W YF++ K + F  F + K  VE Q  RK+K LR+DNG E+    F  +CK EGI 
Sbjct: 729  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIV 788

Query: 379  RHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLD 558
            RH+TV   PQQNG A+RMNRT++ +ARCL  +AGLP  F AEAV+ ACYL+N+SPS  +D
Sbjct: 789  RHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAID 848

Query: 559  FKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
             K   EV      +YS L+VFG  AYA + N
Sbjct: 849  KKTPIEVWSGSPANYSDLRVFGCTAYAHVDN 879



 Score = 36.2 bits (82), Expect(2) = 3e-57
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           CIFLG+  GVKG+KLW P  K
Sbjct: 889 CIFLGYPSGVKGYKLWCPETK 909


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  213 bits (542), Expect(2) = 3e-57
 Identities = 103/211 (48%), Positives = 141/211 (66%)
 Frame = +1

Query: 19   KLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAF 198
            KL+FC+ C+ GK ++V F  +++  +  G+LDY+H D+WGP+   S GG RY +T +D +
Sbjct: 464  KLKFCEHCIFGKHKRVKFNTSTHTTE--GILDYVHSDLWGPARKTSFGGTRYMMTIVDDY 521

Query: 199  SRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGIT 378
            SRK+W YF++ K + F  F + K  VE Q  RK+K LR+DNG E+    F  +CK EGI 
Sbjct: 522  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIV 581

Query: 379  RHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLD 558
            RH+TV   PQQNG A+RMNRT++ +ARCL  +AGLP  F AEAV+ ACYL+N+SPS  +D
Sbjct: 582  RHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAID 641

Query: 559  FKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
             K   EV      +YS L+VFG  AYA + N
Sbjct: 642  KKTPIEVWSGSPANYSDLRVFGCTAYAHVDN 672



 Score = 36.2 bits (82), Expect(2) = 3e-57
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           CIFLG+  GVKG+KLW P  K
Sbjct: 682 CIFLGYPSGVKGYKLWCPETK 702


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  211 bits (536), Expect(2) = 8e-57
 Identities = 113/221 (51%), Positives = 142/221 (64%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ +  L FC+ CV  KQ ++ F  + +  +S  +LD IH DVW  SP  S GGA+Y VT
Sbjct: 449  GLKSVSLPFCEHCVTSKQHRLKF--SRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVT 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR+ WVY +++KS+VF  F + K  VE + G+KIK LR+DNGGEY D +FL FCK
Sbjct: 506  FIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGI R FTV   PQQNG A+RMNRTL ER R +   AGLP SF AEA   ACY+VN+SP
Sbjct: 566  QEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +  K A E+   K  DYS L  FG   Y +    ER K
Sbjct: 626  STAIGLKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQERTK 666



 Score = 37.0 bits (84), Expect(2) = 8e-57
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+  GVKG++LWDP
Sbjct: 674 CIFLGYADGVKGYRLWDP 691


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  214 bits (546), Expect(2) = 1e-56
 Identities = 111/221 (50%), Positives = 149/221 (67%)
 Frame = +1

Query: 4    GVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVT 183
            G+ +  L FC+ CV+ KQ ++ F  A +  +S  +LD IH DVW  SP  S GGA+YFV+
Sbjct: 449  GLKSVSLPFCEHCVISKQHRLKF--AKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVS 505

Query: 184  FMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCK 363
            F+D +SR++WVY +++KS V++ F + K +VE + G++IK LR+DNGGEY D  FL FCK
Sbjct: 506  FIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCK 565

Query: 364  QEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSP 543
            QEGITR FTV   PQQNG A+RMNRTL+ER R +   AGL  SF AEA   ACY++N+SP
Sbjct: 566  QEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSP 625

Query: 544  SKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
            S  +  K   E+   K  DYS+L+VFG   Y +  + ER K
Sbjct: 626  STAIGLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTK 666



 Score = 32.7 bits (73), Expect(2) = 1e-56
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           C FLG+   VKG++LWDP
Sbjct: 674 CTFLGYADNVKGYRLWDP 691


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  214 bits (545), Expect(2) = 1e-56
 Identities = 102/211 (48%), Positives = 142/211 (67%)
 Frame = +1

Query: 19   KLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAF 198
            KL+FC+ C+ GK ++V F  +++  +  G+LDY+H D+WGP+  RS GGARY +T +D +
Sbjct: 403  KLKFCEHCIFGKHKRVKFTTSTHTTE--GILDYVHSDLWGPARKRSFGGARYMMTIVDDY 460

Query: 199  SRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGIT 378
            SRK+W YF++ K E F  F + K  VE Q  RK+K LR+DNG E+   +F  +C+ EGI 
Sbjct: 461  SRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIV 520

Query: 379  RHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLD 558
            RH+TV   PQQNG  +RMNRT++ +ARC+  +AGLP  F AEA + ACYL+N+SPS  +D
Sbjct: 521  RHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAID 580

Query: 559  FKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
             K   E+      +YS LKVFG  AYA + N
Sbjct: 581  KKTPIEMWSGSPANYSDLKVFGCTAYAHVDN 611



 Score = 32.7 bits (73), Expect(2) = 1e-56
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           CIFLG+  GVK +KLW P
Sbjct: 621 CIFLGYPSGVKAYKLWCP 638


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  211 bits (538), Expect(2) = 1e-56
 Identities = 104/217 (47%), Positives = 139/217 (64%)
 Frame = +1

Query: 1    KGVGTCKLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFV 180
            KG  + K++FC+ C+ GK ++V F  + +  K  G LDY+H D+WGPS   S GGARY +
Sbjct: 452  KGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTK--GTLDYVHADLWGPSKKPSLGGARYML 509

Query: 181  TFMDAFSRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFC 360
            T +D +SRK+W YF++ K + F  F   K  +E Q  RK+K L +DNGGE+    F  +C
Sbjct: 510  TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYC 569

Query: 361  KQEGITRHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQS 540
            +QEGI RH T+   PQQNG A+RMNRT++ RARC+  HA +   F AEA + ACYL+N+S
Sbjct: 570  RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 629

Query: 541  PSKLLDFKCAEEVSIRKEVDYSTLKVFGYKAYALIPN 651
            PS  L+ K   EV      DYS LKVFG  AYA + N
Sbjct: 630  PSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 666



 Score = 35.4 bits (80), Expect(2) = 1e-56
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDP 743
           C+FLG+  GVKG+KLW+P
Sbjct: 676 CLFLGYGSGVKGYKLWNP 693


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  211 bits (536), Expect(2) = 1e-56
 Identities = 101/213 (47%), Positives = 143/213 (67%)
 Frame = +1

Query: 19   KLEFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAF 198
            KL+FC+ C+ GK ++V F  +++  +  G+LDY+H D+WGP+   S GGARY +T +D +
Sbjct: 425  KLKFCEHCIFGKHKRVKFNTSTHTTE--GILDYVHSDLWGPARKTSFGGARYMMTIVDDY 482

Query: 199  SRKIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGIT 378
            SRK+W YF++ K + F  F + K  VE Q  RK+K LR+DNG ++    F  +CK EGI 
Sbjct: 483  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIV 542

Query: 379  RHFTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLD 558
            RH+TV   PQQNG A+RMNRT++ +ARC+  +AGLP  F AEAV+ ACYL+N+SPS  +D
Sbjct: 543  RHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAID 602

Query: 559  FKCAEEVSIRKEVDYSTLKVFGYKAYALIPNDE 657
             K   +V      +YS L+VFG  AYA + N +
Sbjct: 603  KKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSK 635



 Score = 36.2 bits (82), Expect(2) = 1e-56
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           CIFLG+  GVKG+KLW P  K
Sbjct: 643 CIFLGYPSGVKGYKLWCPETK 663


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  223 bits (567), Expect(2) = 2e-56
 Identities = 110/214 (51%), Positives = 148/214 (69%)
 Frame = +1

Query: 25   EFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAFSR 204
            + C+ C++GKQ+KV+F       K+  L + +H D+WGPSP  S GG+RY++TF+D  SR
Sbjct: 445  DMCESCILGKQKKVSFLKTGRTPKAEKL-ELVHTDLWGPSPVASLGGSRYYITFIDDSSR 503

Query: 205  KIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGITRH 384
            K+WVYF++ KS+VF  F K K  VE + G K+K LRSDNGGEY D  F ++C  +GI   
Sbjct: 504  KVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRME 563

Query: 385  FTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLDFK 564
             T+   PQQNG A+RMNRTL ERAR +RLHAGLP +F A+AV+ A YL+N+ PS  ++F+
Sbjct: 564  KTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFR 623

Query: 565  CAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
              EEV   KEV +S LKVFG  +Y  I +D R+K
Sbjct: 624  LPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSK 657



 Score = 23.5 bits (49), Expect(2) = 2e-56
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           C F+G+     G++ WD  N+
Sbjct: 665 CFFIGYGDEKFGYRFWDEQNR 685


>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
          Length = 1246

 Score =  223 bits (567), Expect(2) = 2e-56
 Identities = 110/214 (51%), Positives = 148/214 (69%)
 Frame = +1

Query: 25   EFCKFCVMGKQRKVTFKVASNEIKSMGLLDYIHFDVWGPSPTRSRGGARYFVTFMDAFSR 204
            + C+ C++GKQ+KV+F       K+  L + +H D+WGPSP  S GG+RY++TF+D  SR
Sbjct: 417  DMCESCILGKQKKVSFLKTGRTPKAEKL-ELVHTDLWGPSPVASLGGSRYYITFIDDSSR 475

Query: 205  KIWVYFMREKSEVFAKFMK*KKEVENQMGRKIKYLRSDNGGEYKDSKFLKFCKQEGITRH 384
            K+WVYF++ KS+VF  F K K  VE + G K+K LRSDNGGEY D  F ++C  +GI   
Sbjct: 476  KVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRME 535

Query: 385  FTVKKNPQQNGAAKRMNRTLMERARCLRLHAGLPGSF*AEAVNHACYLVNQSPSKLLDFK 564
             T+   PQQNG A+RMNRTL ERAR +RLHAGLP +F A+AV+ A YL+N+ PS  ++F+
Sbjct: 536  KTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFR 595

Query: 565  CAEEVSIRKEVDYSTLKVFGYKAYALIPNDERNK 666
              EEV   KEV +S LKVFG  +Y  I +D R+K
Sbjct: 596  LPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSK 629



 Score = 23.5 bits (49), Expect(2) = 2e-56
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 690 CIFLGFEKGVKGFKLWDPVNK 752
           C F+G+     G++ WD  N+
Sbjct: 637 CFFIGYGDEKFGYRFWDEQNR 657