BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00036170
         (2749 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   806   0.0  
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   785   0.0  
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              781   0.0  
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   754   0.0  
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   751   0.0  
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   751   0.0  
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   748   0.0  
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   748   0.0  
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   734   0.0  
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   734   0.0  
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   719   0.0  
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   719   0.0  
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   717   0.0  
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   703   0.0  
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   697   0.0  
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   694   0.0  
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   693   0.0  
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   688   0.0  
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   672   0.0  
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   667   0.0  

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  806 bits (2083), Expect = 0.0
 Identities = 414/753 (54%), Positives = 548/753 (72%), Gaps = 9/753 (1%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     A+L + S+ AFK+ FRD+ N +  Y +K+NSL+AM+KAGSKGN+LKL QQ LCL
Sbjct: 721  YERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCL 780

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNL-KMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            GLQHS VPL F+IP++LS + +N  K+ GL ++  D  + AES  PYA+V+NSFL GLNP
Sbjct: 781  GLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQN--DTSEYAESYIPYAVVENSFLMGLNP 838

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +ECFVHS++ RDSSFS+NADLPG+LTR+LMF+MRDLY+AYDGTVRNAYGNQLVQFSY ++
Sbjct: 839  LECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIE 898

Query: 2175 -----DDNVVQDTVS-DGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLES 2014
                  D + +DT + D  G PVGS++AC+ISEAAYSALDQPIS+L  SPLL LK VLE 
Sbjct: 899  HTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLEC 958

Query: 2013 GPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDM 1834
            G ++++A RT SLFLSK +E+  +G EYGA+ +KN LE++LFSDIVSTVMI FS Q    
Sbjct: 959  GLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSK 1018

Query: 1833 VHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVE 1654
             HFSPW+CHFHVC+E  +K+ L   SII+AL   C S+    K N P   I S+ C+V +
Sbjct: 1019 THFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFV-D 1077

Query: 1653 PQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLA 1474
             +KE    FCITV++  S  S + ++TVRDLV+PFLL  V++G L+ KKVDILWND P  
Sbjct: 1078 MEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNP-D 1136

Query: 1473 SKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGI 1294
            S   ++  G L+++VY+S  C  +  W +L++ CL+IM +IDW+RSHPD+++DIF VYGI
Sbjct: 1137 SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGI 1196

Query: 1293 DVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSP 1114
            D  W+YF+  LK A+SDI K++LPEH+LLVA CLS TGEFVGLN+KG+ +Q++L SISSP
Sbjct: 1197 DAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSP 1256

Query: 1113 FMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANP 934
            FMQ CFS+PG+ FIKA K  V D+L G+LDA+AWG+   +G+GG FDI+YS KGHE+A P
Sbjct: 1257 FMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARP 1316

Query: 933  VNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN--HASRGHVNLKCISDSVV 760
             ++Y +  +     E+N+KVKVP +      K  AQ +  N   AS+G  +L+ IS SV+
Sbjct: 1317 EDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVL 1376

Query: 759  KEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKI 580
            +   S ND+  +S  L+ IL KY I+H L+E +K+ L  AL FHP+R++K+G G QNIK+
Sbjct: 1377 RSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKV 1436

Query: 579  GRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
              H K+  +RCF L+R DGT  DFSY KCV GA
Sbjct: 1437 RYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGA 1469


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  785 bits (2028), Expect = 0.0
 Identities = 399/762 (52%), Positives = 548/762 (71%), Gaps = 18/762 (2%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y   + A+LS+ S+ +FK+VFRD+ N +  Y +K+NSL+ M KAGSKGN+LKL Q  LCL
Sbjct: 702  YEKQRSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCL 761

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLKMS-GLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            GLQHS VPL FR P++LS + +N + S GL +   D  +SA++  PYA+V++SF+ GLNP
Sbjct: 762  GLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNP 821

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +E FVHS++ RDSSFS+NADLPG+L+R+LMF+MRDLY AYDGTVRN+YG+ +VQF Y + 
Sbjct: 822  LESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDID 881

Query: 2175 DD---------NVVQD--TVSDGFGA-PVGSLAACSISEAAYSALDQPISILVTSPLLCL 2032
             D          ++ +  T+ +G G  PVGSL+AC+ISEAAYSALDQP+S+L TSPLL L
Sbjct: 882  KDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNL 941

Query: 2031 KNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFS 1852
            K V+E G KR++A +T +LFLS  + R  +G EY A+ +KN LER+ FSDIV+TV I FS
Sbjct: 942  KRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFS 1001

Query: 1851 QQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSR 1672
             Q     HF+PW+CHFHVCK+ M+++ L VQSII++L+ +C +++ + K + P   I S 
Sbjct: 1002 PQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSN 1061

Query: 1671 G--CYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVD 1501
            G  C  ++   E D TFCITV  VE S  S + ++ +RD+V+P+LL  VI+GF E KKVD
Sbjct: 1062 GRACSHIDMPNEDD-TFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVD 1120

Query: 1500 ILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDL 1321
            ILW D    SK H++ CGEL+++V++S    I K W +L+N CL+IM +IDW RSHPD++
Sbjct: 1121 ILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNI 1180

Query: 1320 YDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQ 1141
              +   YGID  W++F+  LK A+SD  K+IL EH+L+VA+CLS TGEFVGLNSKG++QQ
Sbjct: 1181 NQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQ 1240

Query: 1140 RDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYS 961
            R+ A +SSPFMQACFSNP ASF+KAAKTG  DDL GT+DA+AWGR   +GTGGQFDIIYS
Sbjct: 1241 REHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYS 1300

Query: 960  GKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPL--NHASRGHVN 787
             K   +A PV+VY +  +S+ SQ+++V+ +VP +L     K+ +  +    + AS     
Sbjct: 1301 VKDQRLAEPVDVYKLLGSSISSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKK 1360

Query: 786  LKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKL 607
            ++    S+ +E+ + +D+  +S +LR ILHKY IDH L+E + + L  AL FHP+R++K+
Sbjct: 1361 IETKRRSIWRELLTLDDIQRLSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKI 1420

Query: 606  GSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            GSG Q IK+G HP+H  +RCF L+R DGTIVDFSY KCV+GA
Sbjct: 1421 GSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLGA 1462


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  781 bits (2018), Expect = 0.0
 Identities = 405/753 (53%), Positives = 539/753 (71%), Gaps = 9/753 (1%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     A+L + S+ AFK+ FRD+ N +  Y +K+NSL+AM+KAGSKGN+LKL QQ LCL
Sbjct: 590  YERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCL 649

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNL-KMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            GLQHS VPL F+IP++LS + +N  K+ GL ++  D  + AES  PYA+V+NSFL GLNP
Sbjct: 650  GLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQN--DTSEYAESYIPYAVVENSFLMGLNP 707

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +ECFVHS++ RDSSFS+NADLPG+LTR+LMF+MRDLY+AYDGTVRNAYGNQLVQFSY ++
Sbjct: 708  LECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIE 767

Query: 2175 -----DDNVVQDTVS-DGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLES 2014
                  D + +DT + D  G PVGS++AC+ISEAAYSALDQPIS+L  SPLL LK VLE 
Sbjct: 768  HTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLEC 827

Query: 2013 GPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDM 1834
            G ++++A RT SLFLSK +E+  +G EYGA+ +KN LE++LFSDIVSTVMI FS Q    
Sbjct: 828  GLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSK 887

Query: 1833 VHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVE 1654
             HFSPW+CHFHVC+E  +K+ L   SII+AL   C S+    K N P   I S+ C+V +
Sbjct: 888  THFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFV-D 946

Query: 1653 PQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLA 1474
             +KE    FCITV++  S  S + ++TVRDLV+PFLL  V++G    K  D+L       
Sbjct: 947  MEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGCC-IKNSDVL------- 998

Query: 1473 SKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGI 1294
                ++  G L+++VY+S  C  +  W +L++ CL+IM +IDW+RSHPD+++DIF VYGI
Sbjct: 999  ----KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGI 1054

Query: 1293 DVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSP 1114
            D  W+YF+  LK A+SDI K++LPEH+LLVA CLS TGEFVGLN+KG+ +Q++L SISSP
Sbjct: 1055 DAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSP 1114

Query: 1113 FMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANP 934
            FMQ CFS+PG+ FIKA K  V D+L G+LDA+AWG+   +G+GG FDI+YS KGHE+A P
Sbjct: 1115 FMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARP 1174

Query: 933  VNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLN--HASRGHVNLKCISDSVV 760
             ++Y +  +     E+N+KVKVP +      K  AQ +  N   AS+G  +L+ IS SV+
Sbjct: 1175 EDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVL 1234

Query: 759  KEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKI 580
            +   S ND+  +S  L+ IL KY I+H L+E +K+ L  AL FHP+R++K+G G QNIK+
Sbjct: 1235 RSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKV 1294

Query: 579  GRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
              H K+  +RCF L+R DGT  DFSY KCV GA
Sbjct: 1295 RYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGA 1327


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  754 bits (1946), Expect = 0.0
 Identities = 387/746 (51%), Positives = 527/746 (70%), Gaps = 1/746 (0%)
 Frame = -2

Query: 2715 AYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILC 2536
            +Y   + A+LS+ S+ AFK VF D+ N    YGSK+NSL+ M KAGSKGN+LKL Q  LC
Sbjct: 686  SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLGMFKAGSKGNLLKLVQHSLC 745

Query: 2535 LGLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            LGLQHS  PL FR P+ELS + +N   +G      D  + A+S  P A+V+NSFL GLNP
Sbjct: 746  LGLQHSLAPLSFRFPHELSCAAWNRLRAG------DNTECAKSYIPSAVVENSFLTGLNP 799

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +ECF+HS++ RDSSFS+NADLPG+LTR+LMF+MRDL  AYDGTVRNAYGNQ+VQFSY ++
Sbjct: 800  LECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859

Query: 2175 DDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGPKRTS 1996
              +     + D    PVGSL+AC+ISEAAYSALDQPIS+L TSPLL LKNVLE G K+++
Sbjct: 860  GTSTPTGEIGD---QPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916

Query: 1995 AHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVHFSPW 1816
            A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST MI +S QT  M HFSPW
Sbjct: 917  ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPW 976

Query: 1815 ICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQKEYD 1636
            ICHFHV KE M++ GL   SII++L   C ++    K + P   I ++ C  +  QKE +
Sbjct: 977  ICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECN 1036

Query: 1635 VTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLASKSHE 1459
              FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KKVDILW D   ASKSH+
Sbjct: 1037 DAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHD 1096

Query: 1458 NYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGIDVAWE 1279
            +  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD++      YGID   +
Sbjct: 1097 DSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQ 1156

Query: 1278 YFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPFMQAC 1099
            +F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+  QR  +S+SSPF+QA 
Sbjct: 1157 FFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAF 1216

Query: 1098 FSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPVNVYD 919
            FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDIIYSG+G  ++ PV+VY+
Sbjct: 1217 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1276

Query: 918  MFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCISDSVVKEIHSWN 739
            + S   +S ++N K+KV  +   + +K  A+         G+++ + IS  V+++  ++N
Sbjct: 1277 LLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYN 1335

Query: 738  DVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQ 559
            DV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KLG    +I++  HP+HQ
Sbjct: 1336 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1395

Query: 558  KSRCFMLIRKDGTIVDFSYRKCVMGA 481
             SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1396 NSRCFSLVREDGSIEDFSYHKCVIGA 1421


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  751 bits (1938), Expect = 0.0
 Identities = 387/746 (51%), Positives = 526/746 (70%), Gaps = 1/746 (0%)
 Frame = -2

Query: 2715 AYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILC 2536
            +Y   + A+LS+ S+ AFK VF D+ N    YGSK+NSL+AM KAGSKGN+LKL Q  LC
Sbjct: 686  SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745

Query: 2535 LGLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            LGLQHS  PL FR P+ELS + +N   +G      D  + A+S  P A+V NSFL GLNP
Sbjct: 746  LGLQHSLAPLSFRFPHELSCAAWNRLRAG------DNTECAKSYIPSAVVANSFLTGLNP 799

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +ECF+HS++ RDSSFS+NADLPG+LTR+LMF+MRDL  AYDGTVRNAYGNQ+VQFSY ++
Sbjct: 800  LECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859

Query: 2175 DDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGPKRTS 1996
              +     +    G  VGSL+AC+ISEAAYSALDQPIS+L TSPLL LKNVLE G K+++
Sbjct: 860  GTSTPTGEIG---GQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916

Query: 1995 AHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVHFSPW 1816
            A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST MI +S QT  M HFSPW
Sbjct: 917  ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPW 976

Query: 1815 ICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQKEYD 1636
            ICHFHV KE M++ GL   SII++L   C ++    K + P   I ++ C  +  QKE +
Sbjct: 977  ICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECN 1036

Query: 1635 VTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLASKSHE 1459
              FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KKVDILW D   ASKSH+
Sbjct: 1037 DAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHD 1096

Query: 1458 NYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGIDVAWE 1279
            +  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD++      YGID   +
Sbjct: 1097 DSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQ 1156

Query: 1278 YFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPFMQAC 1099
            +F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+  QR  +S+SSPF+QA 
Sbjct: 1157 FFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAF 1216

Query: 1098 FSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPVNVYD 919
            FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDIIYSG+G  ++ PV+VY+
Sbjct: 1217 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1276

Query: 918  MFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCISDSVVKEIHSWN 739
            + S   +S ++N K+KV  +   + +K  A+         G+++ + IS  V+++  ++N
Sbjct: 1277 LLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYN 1335

Query: 738  DVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQ 559
            DV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KLG    +I++  HP+HQ
Sbjct: 1336 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1395

Query: 558  KSRCFMLIRKDGTIVDFSYRKCVMGA 481
             SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1396 NSRCFSLVREDGSIEDFSYHKCVIGA 1421


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  751 bits (1938), Expect = 0.0
 Identities = 387/746 (51%), Positives = 526/746 (70%), Gaps = 1/746 (0%)
 Frame = -2

Query: 2715 AYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILC 2536
            +Y   + A+LS+ S+ AFK VF D+ N    YGSK+NSL+AM KAGSKGN+LKL Q  LC
Sbjct: 724  SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 783

Query: 2535 LGLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            LGLQHS  PL FR P+ELS + +N   +G      D  + A+S  P A+V NSFL GLNP
Sbjct: 784  LGLQHSLAPLSFRFPHELSCAAWNRLRAG------DNTECAKSYIPSAVVANSFLTGLNP 837

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            +ECF+HS++ RDSSFS+NADLPG+LTR+LMF+MRDL  AYDGTVRNAYGNQ+VQFSY ++
Sbjct: 838  LECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 897

Query: 2175 DDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGPKRTS 1996
              +     +    G  VGSL+AC+ISEAAYSALDQPIS+L TSPLL LKNVLE G K+++
Sbjct: 898  GTSTPTGEIG---GQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 954

Query: 1995 AHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVHFSPW 1816
            A +T SLFLS  + +  +G EYGA+ +KN LE ++ SDIVST MI +S QT  M HFSPW
Sbjct: 955  ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPW 1014

Query: 1815 ICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQKEYD 1636
            ICHFHV KE M++ GL   SII++L   C ++    K + P   I ++ C  +  QKE +
Sbjct: 1015 ICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECN 1074

Query: 1635 VTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLASKSHE 1459
              FC+TV  VE    + + +ET++  V+PFLL+ V++GF E KKVDILW D   ASKSH+
Sbjct: 1075 DAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHD 1134

Query: 1458 NYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGIDVAWE 1279
            +  GEL+++V +S  C I   W+ L+N C +IM +IDW RSHPD++      YGID   +
Sbjct: 1135 DSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQ 1194

Query: 1278 YFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPFMQAC 1099
            +F+  L+ A+SD  K+ILPEH+L+VA+ LS TGEFVGLN+KG+  QR  +S+SSPF+QA 
Sbjct: 1195 FFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAF 1254

Query: 1098 FSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPVNVYD 919
            FSNPGASFIKAAK G  D+L G++DA+ WG+   +GTGG FDIIYSG+G  ++ PV+VY+
Sbjct: 1255 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1314

Query: 918  MFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCISDSVVKEIHSWN 739
            + S   +S ++N K+KV  +   + +K  A+         G+++ + IS  V+++  ++N
Sbjct: 1315 LLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYN 1373

Query: 738  DVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQ 559
            DV+ +S +L++ILHKYSI   L+E +K+ +  AL FHP+RN+KLG    +I++  HP+HQ
Sbjct: 1374 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1433

Query: 558  KSRCFMLIRKDGTIVDFSYRKCVMGA 481
             SRCF L+R+DG+I DFSY KCV+GA
Sbjct: 1434 NSRCFSLVREDGSIEDFSYHKCVIGA 1459


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  748 bits (1931), Expect = 0.0
 Identities = 387/755 (51%), Positives = 518/755 (68%), Gaps = 11/755 (1%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y   K A+L++ S+ AFK+VFRD+ N +  Y  K+NSL+ M KAGSKGN++KL Q  +CL
Sbjct: 699  YEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCL 758

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNPV 2353
            GLQHS V L F +P++LS + +N +          +PD  +S  PYA+V+NSFL GLNP 
Sbjct: 759  GLQHSLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPF 818

Query: 2352 ECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKD 2173
            ECF HS++ RDSSFS+NA++PG+LTRKL F MRD+Y AYDGTVRNAYGNQLVQF Y +  
Sbjct: 819  ECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDI-- 876

Query: 2172 DNVVQDTVSDG-------FGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLES 2014
            D    ++ S+         G PVGSLAAC+ISEAAYSALDQPIS+L  SPLL LK VLE 
Sbjct: 877  DRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLEC 936

Query: 2013 GPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDM 1834
            G KR S  +TFSLFLS+ + +  YG EYGA+ +KN LERV+F DIVS+VMI FS      
Sbjct: 937  GSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRK 996

Query: 1833 VHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVE 1654
             HFSPW+CHFHVCKE ++K+ L + S+I +LN  C S  +  + N P   I+++ C + +
Sbjct: 997  KHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLAD 1056

Query: 1653 PQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPL 1477
               E   T C+TV + E +  S + ++ ++DL++ FLL  VIRGF E  +VDI WND P 
Sbjct: 1057 SLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPK 1116

Query: 1476 ASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYG 1297
              K   ++ GEL+++V +S     R  W  L+N CL IM LIDW RSHPD+ + +   YG
Sbjct: 1117 VPKPRCSH-GELYLRVTMSGEGNSR-FWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYG 1174

Query: 1296 IDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISS 1117
            ID  W+YF+  L+ A  D+ K+I  EH+LLV++ LS TGEFVGLN KG+  QR+ A + +
Sbjct: 1175 IDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKT 1234

Query: 1116 PFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVAN 937
            PFMQACFS+PGA  IKAAK G+KD+L G+LDA+AWGR   +GTGGQFDI+YSGKGHE+  
Sbjct: 1235 PFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNK 1294

Query: 936  PVNVYDMFSNSLISQEKNVKVKVPSSLKN-LCNKWSAQSLPLNHAS--RGHVNLKCISDS 766
            PV+VY++       +++N K++  S  KN +  K+SAQ +  N  S  +G   L  +S S
Sbjct: 1295 PVDVYNLLGGQSTCEKQNTKIE--SLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKS 1352

Query: 765  VVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNI 586
            ++++  + ND+  +S +LR ILHKYS++  LNE +KS L  AL FHP R++K+G G Q+I
Sbjct: 1353 ILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI 1412

Query: 585  KIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            K+G H K+Q +RCF+LIR DGT  DFSY KCV+GA
Sbjct: 1413 KVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGA 1447


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  748 bits (1930), Expect = 0.0
 Identities = 390/751 (51%), Positives = 512/751 (68%), Gaps = 11/751 (1%)
 Frame = -2

Query: 2700 KKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCLGLQH 2521
            K A+LS+V   AFK +FRD+ +    Y  K+NSL+ M+KAGSKGN+ KL Q  +CLGLQH
Sbjct: 592  KSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQH 651

Query: 2520 SSVPLPFRIPYELSSSTYN-LKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNPVECF 2344
            S +PL FRIP +LS + +N  K   L +      +  ES  P A+V +SFL GLNP+ECF
Sbjct: 652  SLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVKSSFLTGLNPLECF 711

Query: 2343 VHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKDD-- 2170
            VHS++ RDSSFS NADLPG+LTRKLMF MRDLY AYDGTVRNAYGNQLVQFSY +  D  
Sbjct: 712  VHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKS 771

Query: 2169 ------NVVQDTVSDGFGA-PVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESG 2011
                  +    T  DG G  PVGSL+AC++SEAAYSALDQP+S+L TSPLL LKN+LE G
Sbjct: 772  DSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETSPLLNLKNILECG 831

Query: 2010 PKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMV 1831
             K++SA +T SLFLSK + R  +G EYGA+ +KN L  + FSDIVSTVMI FS Q+    
Sbjct: 832  SKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMIIFSSQSNSQK 891

Query: 1830 HFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEP 1651
             FSPW+ HFH+CKE +RK+ L V S++++L   C S+    K       I S+GC   + 
Sbjct: 892  RFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKIVLRSLLITSKGCSAAQT 951

Query: 1650 QKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLA 1474
                D TFCITV + E S  S   ++  RDLV+PFLL  V++GFLE KKVDILWND P  
Sbjct: 952  CNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRE 1011

Query: 1473 SKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGI 1294
            SK      GEL+++V +S     R+ W++L++ CL+IM LIDW RSHPD+++D    YGI
Sbjct: 1012 SKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGI 1071

Query: 1293 DVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSP 1114
            D  W+YF+  L+ A +DI K ILP+H++LVADCLS TGEFVGLN+KGI QQ+   S+SSP
Sbjct: 1072 DAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSP 1131

Query: 1113 FMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANP 934
            F+QACFS+PGA FIKAAK GV D+L G+++A+AWG   P GTG QFDI+YS +G  ++ P
Sbjct: 1132 FVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKP 1191

Query: 933  VNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCISDSVVKE 754
            +N YD+  + + S  +N   +   +  N  +K    S+ L  +       + +  SV+++
Sbjct: 1192 LNPYDLLGSQISSSRENA-FETSKAWNNTLDKCDVTSIGLEKS-------ESVFKSVIRK 1243

Query: 753  IHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQNIKIGR 574
              + ND+   + +L+ IL KY I+  L E +KSIL  AL FHP + DK+GSG+Q+IK+G+
Sbjct: 1244 YLTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQ 1303

Query: 573  HPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            HPKH+ +RCFML+R D T  DFSY KCV+GA
Sbjct: 1304 HPKHENARCFMLVRIDRTEEDFSYHKCVLGA 1334


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  734 bits (1896), Expect = 0.0
 Identities = 388/755 (51%), Positives = 514/755 (68%), Gaps = 15/755 (1%)
 Frame = -2

Query: 2700 KKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCLGLQH 2521
            K ASLS+ S  AFK+VFRD+ N +  Y S +NSL+AM+KAGSKGN+LKL Q  +CLGLQ 
Sbjct: 465  KSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQ 524

Query: 2520 SSVPLPFRIPYELSSSTYNLKMSGLR-ESSHDIPDSAESSFPYAIVDNSFLDGLNPVECF 2344
            S VP+ FR+P +LS   +N   S L  E  H +P+   S  P A+V +SFL GLNP+ECF
Sbjct: 525  SLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECF 584

Query: 2343 VHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKDDNV 2164
            VHSL+ RDSSFS +AD+ G+L RKLMF+MRDLY+ YDGTVRNAYGNQ+VQFSY   +   
Sbjct: 585  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIA 644

Query: 2163 VQDTVSDGF--------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
                  D          G PVGSLAAC+ISEAAYSALDQP+S L +SPLL LK +LESG 
Sbjct: 645  STKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGA 704

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
               S  +T S+FLSK + RW +G EYGA+ +K  LER+L S++VSTVMI FS +T    H
Sbjct: 705  GSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTH 764

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQ 1648
              PW+CHFH+ KE ++ + L ++SI++ALN    ++      + P  HI  + C V E +
Sbjct: 765  NCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKDCSVAEAR 824

Query: 1647 KEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLAS 1471
            KE     CITV+V E S     L++T+RD+V+PFLL  VI+GF  FKKVDILW +LP  S
Sbjct: 825  KEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPS 883

Query: 1470 KSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGID 1291
            KS     GEL+++V++SESC+  K WN L++ CL+I  LIDW+RS+PDD++D+   YGID
Sbjct: 884  KSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGID 943

Query: 1290 VAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPF 1111
            VAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV L++KG+  QR  A + SPF
Sbjct: 944  VAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPF 1003

Query: 1110 MQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPV 931
            MQACFSNPG SF++AAK G+ D+L G+L+++AWG+   +GTG  FDIIYSGKG+E A P+
Sbjct: 1004 MQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPI 1063

Query: 930  NVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLK-CISDSVVKE 754
            +VY +  N + S    VKV +             +SL         +N K C S+  + +
Sbjct: 1064 DVYTLLQNHVTSGTPKVKVTLDED-----GGMDGKSLARRLDRLDDLNKKSCKSEWSITK 1118

Query: 753  IH---SWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGL-QNI 586
            +    S+ND+  +S SL+++L KY+ID  LNE +K I   ALQFHP+RN+K+G G  Q I
Sbjct: 1119 LRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEI 1178

Query: 585  KIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            KIG H +++ SRCFML+R DG++ DFSYRKC+  A
Sbjct: 1179 KIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHA 1213


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  734 bits (1896), Expect = 0.0
 Identities = 388/755 (51%), Positives = 514/755 (68%), Gaps = 15/755 (1%)
 Frame = -2

Query: 2700 KKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCLGLQH 2521
            K ASLS+ S  AFK+VFRD+ N +  Y S +NSL+AM+KAGSKGN+LKL Q  +CLGLQ 
Sbjct: 678  KSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQ 737

Query: 2520 SSVPLPFRIPYELSSSTYNLKMSGLR-ESSHDIPDSAESSFPYAIVDNSFLDGLNPVECF 2344
            S VP+ FR+P +LS   +N   S L  E  H +P+   S  P A+V +SFL GLNP+ECF
Sbjct: 738  SLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECF 797

Query: 2343 VHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKDDNV 2164
            VHSL+ RDSSFS +AD+ G+L RKLMF+MRDLY+ YDGTVRNAYGNQ+VQFSY   +   
Sbjct: 798  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIA 857

Query: 2163 VQDTVSDGF--------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
                  D          G PVGSLAAC+ISEAAYSALDQP+S L +SPLL LK +LESG 
Sbjct: 858  STKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGA 917

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
               S  +T S+FLSK + RW +G EYGA+ +K  LER+L S++VSTVMI FS +T    H
Sbjct: 918  GSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTH 977

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQ 1648
              PW+CHFH+ KE ++ + L ++SI++ALN    ++      + P  HI  + C V E +
Sbjct: 978  NCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKDCSVAEAR 1037

Query: 1647 KEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLAS 1471
            KE     CITV+V E S     L++T+RD+V+PFLL  VI+GF  FKKVDILW +LP  S
Sbjct: 1038 KEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPS 1096

Query: 1470 KSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGID 1291
            KS     GEL+++V++SESC+  K WN L++ CL+I  LIDW+RS+PDD++D+   YGID
Sbjct: 1097 KSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGID 1156

Query: 1290 VAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPF 1111
            VAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV L++KG+  QR  A + SPF
Sbjct: 1157 VAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPF 1216

Query: 1110 MQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPV 931
            MQACFSNPG SF++AAK G+ D+L G+L+++AWG+   +GTG  FDIIYSGKG+E A P+
Sbjct: 1217 MQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPI 1276

Query: 930  NVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLK-CISDSVVKE 754
            +VY +  N + S    VKV +             +SL         +N K C S+  + +
Sbjct: 1277 DVYTLLQNHVTSGTPKVKVTLDED-----GGMDGKSLARRLDRLDDLNKKSCKSEWSITK 1331

Query: 753  IH---SWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGL-QNI 586
            +    S+ND+  +S SL+++L KY+ID  LNE +K I   ALQFHP+RN+K+G G  Q I
Sbjct: 1332 LRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEI 1391

Query: 585  KIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            KIG H +++ SRCFML+R DG++ DFSYRKC+  A
Sbjct: 1392 KIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHA 1426


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  719 bits (1856), Expect = 0.0
 Identities = 378/755 (50%), Positives = 507/755 (67%), Gaps = 15/755 (1%)
 Frame = -2

Query: 2700 KKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCLGLQH 2521
            K ASLS+ S  AFK+VFRD+ N +  Y S +NSL+AM+KAGSKGN+LKL Q  +CLGLQ 
Sbjct: 678  KSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQ 737

Query: 2520 SSVPLPFRIPYELSSSTYNLKMSGLR-ESSHDIPDSAESSFPYAIVDNSFLDGLNPVECF 2344
            S VP+ FR+P +LS   +N   S L  E  H +P+   S  P A+V +SFL GLNP+ECF
Sbjct: 738  SLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECF 797

Query: 2343 VHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKDDNV 2164
            VHSL+ RDSSFS +AD+ G+L RKLMF+MRDLY+ YDGTVRNAYGNQ+VQFSY   +   
Sbjct: 798  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIA 857

Query: 2163 VQDTVSDGF--------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
                  +          G PVGSLAAC+ISEAAY ALDQP+S L +SPLL LK +LESG 
Sbjct: 858  STKVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSPLLNLKKILESGA 917

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
               +  +T S+FLSK + RW +G EYGA+ +K  LER+L S++VSTVMI FS +T    H
Sbjct: 918  GSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTH 977

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQ 1648
              PW+CHFH+ KE ++ + L ++S+++ALN    ++      + P  HI  + C V E Q
Sbjct: 978  NCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQ 1037

Query: 1647 KEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLAS 1471
            KE     CITV+ VE S     L++T+RD+V+PFLL  VI+GF  FKKVDILW +LP  S
Sbjct: 1038 KEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPS 1096

Query: 1470 KSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGID 1291
            KS     GEL+++V++SESC+  K WN L++ CL+I  LIDW+RS+PDD++D+   YGID
Sbjct: 1097 KSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGID 1156

Query: 1290 VAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPF 1111
            VAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV L++KG+  QR  A + SPF
Sbjct: 1157 VAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPF 1216

Query: 1110 MQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPV 931
            MQACF+NPG SF++AAK G+ DDL G+L+++AWG+   +GTG  FDI+YSGKG+E+A  +
Sbjct: 1217 MQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQI 1276

Query: 930  NVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKC----ISDSV 763
            NVY +  N +     NVKV +              SL         ++ K     +S + 
Sbjct: 1277 NVYTLLRNLVTVDTPNVKVTLGKD-----GGMDGMSLVRRLDRLDDLDKKSCKSELSFTK 1331

Query: 762  VKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGL-QNI 586
            ++   S+ND+  +S SL+++L KY I   LNE +K +   ALQFHP+RN+K+G G  + I
Sbjct: 1332 LRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEI 1391

Query: 585  KIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            KIG H + + SRCFM++R D T+ DFSYRKC+  A
Sbjct: 1392 KIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHA 1426


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  719 bits (1856), Expect = 0.0
 Identities = 378/755 (50%), Positives = 507/755 (67%), Gaps = 15/755 (1%)
 Frame = -2

Query: 2700 KKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCLGLQH 2521
            K ASLS+ S  AFK+VFRD+ N +  Y S +NSL+AM+KAGSKGN+LKL Q  +CLGLQ 
Sbjct: 370  KSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQ 429

Query: 2520 SSVPLPFRIPYELSSSTYNLKMSGLR-ESSHDIPDSAESSFPYAIVDNSFLDGLNPVECF 2344
            S VP+ FR+P +LS   +N   S L  E  H +P+   S  P A+V +SFL GLNP+ECF
Sbjct: 430  SLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECF 489

Query: 2343 VHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKDDNV 2164
            VHSL+ RDSSFS +AD+ G+L RKLMF+MRDLY+ YDGTVRNAYGNQ+VQFSY   +   
Sbjct: 490  VHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIA 549

Query: 2163 VQDTVSDGF--------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
                  +          G PVGSLAAC+ISEAAY ALDQP+S L +SPLL LK +LESG 
Sbjct: 550  STKVTGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSPLLNLKKILESGA 609

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
               +  +T S+FLSK + RW +G EYGA+ +K  LER+L S++VSTVMI FS +T    H
Sbjct: 610  GSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTH 669

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYVVEPQ 1648
              PW+CHFH+ KE ++ + L ++S+++ALN    ++      + P  HI  + C V E Q
Sbjct: 670  NCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQ 729

Query: 1647 KEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWNDLPLAS 1471
            KE     CITV+ VE S     L++T+RD+V+PFLL  VI+GF  FKKVDILW +LP  S
Sbjct: 730  KEKS-EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPS 788

Query: 1470 KSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDIFCVYGID 1291
            KS     GEL+++V++SESC+  K WN L++ CL+I  LIDW+RS+PDD++D+   YGID
Sbjct: 789  KSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGID 848

Query: 1290 VAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDLASISSPF 1111
            VAWEYF+ +L  AVS+  K ILPEH++L AD L+ TGEFV L++KG+  QR  A + SPF
Sbjct: 849  VAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPF 908

Query: 1110 MQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKGHEVANPV 931
            MQACF+NPG SF++AAK G+ DDL G+L+++AWG+   +GTG  FDI+YSGKG+E+A  +
Sbjct: 909  MQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQI 968

Query: 930  NVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKC----ISDSV 763
            NVY +  N +     NVKV +              SL         ++ K     +S + 
Sbjct: 969  NVYTLLRNLVTVDTPNVKVTLGKD-----GGMDGMSLVRRLDRLDDLDKKSCKSELSFTK 1023

Query: 762  VKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGL-QNI 586
            ++   S+ND+  +S SL+++L KY I   LNE +K +   ALQFHP+RN+K+G G  + I
Sbjct: 1024 LRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEI 1083

Query: 585  KIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            KIG H + + SRCFM++R D T+ DFSYRKC+  A
Sbjct: 1084 KIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHA 1118


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  717 bits (1850), Expect = 0.0
 Identities = 380/758 (50%), Positives = 519/758 (68%), Gaps = 4/758 (0%)
 Frame = -2

Query: 2742 STTVHEVSHAYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNM 2563
            S  V ++SH  +  + A LS+ SI AFK+VFRD+      Y  ++NSL+ M+KAGSKGN+
Sbjct: 637  SLQVEKLSHDKQ--RSAVLSQASIDAFKKVFRDIQTLAFRYACEDNSLLTMLKAGSKGNL 694

Query: 2562 LKLAQQILCLGLQHSSVPLPFRIPYELSSSTYNL-KMSGLRESSHDIPDSAESSFPYAIV 2386
            LKL Q  +CLGLQHS VPL F  P+ LS + +N  K+S L +   D P SA+S  PYA+V
Sbjct: 695  LKLVQHSMCLGLQHSLVPLSFGFPHLLSCAAWNEHKVSCLIQEDADAPKSAKSYIPYAVV 754

Query: 2385 DNSFLDGLNPVECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGN 2206
             NSFL GLNP+E FVHS++ R+SSFS+NA+LPG+L R+LM++MRDLY+AYDGT+RN+YG+
Sbjct: 755  GNSFLTGLNPLESFVHSVTSRESSFSDNAELPGTLHRRLMYFMRDLYIAYDGTIRNSYGS 814

Query: 2205 QLVQFSYGVKDDNVVQDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKN 2026
             +VQF YG  +        S+  G PVGSL+AC+ISEAAYSALDQPIS+L TSPLL LKN
Sbjct: 815  HVVQFYYGTDEGT------SEIAGQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKN 868

Query: 2025 VLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQ 1846
             LE G K+    +T  L+LS+ + R  +G EY A+ +KN LE ++FSDIVSTVMI F+ Q
Sbjct: 869  ALECGSKKRQGGQTMLLYLSRRLGRQRHGYEYAALEVKNYLEALMFSDIVSTVMITFTSQ 928

Query: 1845 TCDMVH---FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILS 1675
                     FSPW        E +R++ LTVQS+I +L     +S +  K   P   I S
Sbjct: 929  AGSQKSQKSFSPW--------EILRRRRLTVQSVINSLYERHSTSRKGSKVKLPNLRIRS 980

Query: 1674 RGCYVVEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDIL 1495
            + C V   ++E + T CITV++E S  SV+ + TV+DL++PFLL  +++GF E +KVDIL
Sbjct: 981  KDCSVPATREEDNDTCCITVSIECSKNSVIQLITVQDLLIPFLLETIVKGFREIEKVDIL 1040

Query: 1494 WNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYD 1315
            W+D    SK+  +  GEL++KV +S    ++  W+ L+N CLRIM LIDW RSHP+++ +
Sbjct: 1041 WSDRSNTSKATRDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSHPENVNE 1100

Query: 1314 IFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRD 1135
               VYGID  W++F+  L+ AVSD+ K+ILPEH+LLVA+ LSVTG FVGL  KG+ +QR+
Sbjct: 1101 FCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKGLARQRE 1160

Query: 1134 LASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGK 955
             AS+++PF QACFSNP A FIKAAK  V D L GTLDA+AWG   P+GTGGQF++++SGK
Sbjct: 1161 HASVATPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFSGK 1220

Query: 954  GHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCI 775
            GHEV  P+NVYDM +  +    + V  + P +  +   K+ A  L     S+G   L  I
Sbjct: 1221 GHEVDKPINVYDMLATGISPDVQGVN-ETPDAKNHRSVKFGALLLYDKSVSQGLKKLG-I 1278

Query: 774  SDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGL 595
            S   +K++   +D+  +S +L +IL+KY I+  L+  +KS L  AL FHP+ ++K+G+G 
Sbjct: 1279 SKDRIKKLFKLDDIWILSNALAKILNKYPINQSLDHKDKSTLMIALYFHPRIDEKIGTGF 1338

Query: 594  QNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            Q+IK+  HPKHQ SRCF+L+R DGT+ DFSYRKCV+GA
Sbjct: 1339 QDIKVAYHPKHQSSRCFVLVRADGTVEDFSYRKCVLGA 1376


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  703 bits (1814), Expect = 0.0
 Identities = 377/759 (49%), Positives = 496/759 (65%), Gaps = 10/759 (1%)
 Frame = -2

Query: 2727 EVSH-AYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLA 2551
            +V H  +   + A+LS+ S+ AFK VFRD+      Y SK+N+L+AM K+GSKGN+LK+ 
Sbjct: 687  DVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVV 746

Query: 2550 QQILCLGLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFL 2371
            Q  +CLGLQHS VPL FR+P +LS   +N      ++ + +  + A S  P A+V+  FL
Sbjct: 747  QHSMCLGLQHSLVPLSFRMPLQLSCDAWN------KQKAENAVECARSYIPSAVVEGCFL 800

Query: 2370 DGLNPVECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQF 2191
             GLNP+ECFVHS++ R+SSFS+NADLPG+LTR+LMF+MRD++ AYDG+VR+AYGNQL+QF
Sbjct: 801  TGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMFFMRDVHAAYDGSVRSAYGNQLIQF 860

Query: 2190 SYGVKDDNVVQ--------DTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLC 2035
            SY + +    +        D      G PVGSLAACSISEAAYSALDQPIS+L  SPLL 
Sbjct: 861  SYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAACSISEAAYSALDQPISLLEKSPLLN 920

Query: 2034 LKNVLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEF 1855
            LKNVLE G K+++AH++ SLFLS+ + R  +G EYGA+ +++ LER+LFSDIVS   I F
Sbjct: 921  LKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIF 980

Query: 1854 SQQTCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILS 1675
            S Q+     FSPW+CHFHV KE M+K+ L V SII  LN  C S+      N P   I  
Sbjct: 981  SSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNGRCKSN-----TNLPNVQISC 1035

Query: 1674 RGCYVVEPQKEYDVTFCITVA-VEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDI 1498
            + C + +  +E + T CITV  VE S  S   + T++DL++PFLL  V++G +E  KVDI
Sbjct: 1036 KSCSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVDI 1095

Query: 1497 LWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLY 1318
            LW D P  SK+H    GEL+++V +S   E  + WNLL++ CL IM +IDW  S PD++ 
Sbjct: 1096 LWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVR 1155

Query: 1317 DIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQR 1138
            D    YGID  W++F++RL+ A+SD+ KS+LPEHMLLVA+CLSVTGEFVGLN+KG K+QR
Sbjct: 1156 DFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQR 1215

Query: 1137 DLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSG 958
            + AS+SSPF+QACFS+PG  FIKAAK GVKDDL G+LDA+AWG+   +GT GQFDI+YSG
Sbjct: 1216 EDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGT-GQFDIVYSG 1274

Query: 957  KGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKC 778
            K                 L    K VK+K P S   L                       
Sbjct: 1275 K-------------VKLLLFLLVKRVKLKTPPSFVVL----------------------- 1298

Query: 777  ISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSG 598
                           V +   L  +L  YS+D  LNE +K  LT AL FHP++ +K+GSG
Sbjct: 1299 --------------TVFLETPLINLLVWYSVDQQLNEADKCTLTMALYFHPRKEEKIGSG 1344

Query: 597  LQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
             ++IK+ +HP++Q SRCF L+R DGTI DFSYRKCV GA
Sbjct: 1345 FKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGA 1383


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  697 bits (1799), Expect = 0.0
 Identities = 365/759 (48%), Positives = 507/759 (66%), Gaps = 15/759 (1%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     A+LS+ S+ AF++VFR++ +    Y  K+N+ +AM KAGSKGN+LKL Q  +CL
Sbjct: 695  YERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCL 754

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNPV 2353
            GLQHS V LP++IP +LS + +N    G++  S D  +  +S  PYA+V++SFL GLNP+
Sbjct: 755  GLQHSLVRLPYKIPRKLSCAAWN-SQKGMQIFS-DTVEPVQSYIPYAVVESSFLTGLNPL 812

Query: 2352 ECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKD 2173
            ECFVHS++ RDSSFS+NADLPG+LTR+LMF+MRD+Y AYDGTVRN YGNQL+QFSY  ++
Sbjct: 813  ECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEE 872

Query: 2172 DNVV-----QDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
            D+       +DT+    G PVG+L+AC++SEAAYSAL QPIS+L  SPLL LK VLE G 
Sbjct: 873  DSSCDSHFREDTIG---GEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLECGS 929

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
            ++    +T SLFLS+ I +   G EY A+ +KN LER++FSDIVSTVMI F+ Q+  +  
Sbjct: 930  RKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDIVSTVMIIFTPQSRSLEK 989

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYV---- 1660
            +SPW+CHFH+ KE + ++ L V SII++L     S  +  K   P   I ++ C V    
Sbjct: 990  YSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVTLPNLKISTKKCSVHYMA 1049

Query: 1659 -----VEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDIL 1495
                     KE D   CITV +  +  + V ++ VR++++PFLLR  I+G  E KKVDIL
Sbjct: 1050 KEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPFLLRTAIKGIFEIKKVDIL 1109

Query: 1494 WNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYD 1315
            W DL   SKS+    GEL+++V +S   +    W  L+N C RIM +IDW RSHPD+++ 
Sbjct: 1110 WKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMIDWARSHPDNIHH 1169

Query: 1314 IFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRD 1135
                +GID  W++F+  L  A SD   SILP+H+ LVA+ LS +GEFVGLNSKG+ +QR+
Sbjct: 1170 FCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSASGEFVGLNSKGMARQRN 1229

Query: 1134 LASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGK 955
             AS+SSPF+QACFSNPG++F+KAAK+GV D+L GTLD +AWG  + MGT GQFD++YS K
Sbjct: 1230 HASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGTSGQFDVMYSEK 1289

Query: 954  GHEVANPVNVYDMFSNSLISQEKNVKVKVPSSL-KNLCNKWSAQSLPLNHASRGHVNLKC 778
              E+A  V+VYD+   S    ++ +     ++   + CN    +     +A +     K 
Sbjct: 1290 VQELAKSVDVYDLLETSFDQLDQEINTSQSNNYSSDKCNS-QFRHKKGRYAPKEPKQWK- 1347

Query: 777  ISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSG 598
               SV++   + ND+  ++ + R IL+KY ID  L+E +K  + + L FHP+RN+KLGSG
Sbjct: 1348 ---SVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSG 1404

Query: 597  LQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
             Q+IK+G HPK   SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1405 PQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGA 1443


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  694 bits (1791), Expect = 0.0
 Identities = 366/760 (48%), Positives = 507/760 (66%), Gaps = 16/760 (2%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     A+LS+ S+ AF++VFR++ +    Y  K+N+ +AM KAGSKGN+LKL Q  +CL
Sbjct: 695  YERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCL 754

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNPV 2353
            GLQHS V LP++IP +LS + +N    G++  S D  +  +S  PYA+V++SFL GLNP+
Sbjct: 755  GLQHSLVRLPYKIPRKLSCAAWN-SQKGMQIFS-DTVEPVQSYIPYAVVESSFLTGLNPL 812

Query: 2352 ECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVKD 2173
            ECFVHS++ RDSSFS+NADLPG+LTR+LMF+MRD+Y AYDGTVRN YGNQL+QFSY  ++
Sbjct: 813  ECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEE 872

Query: 2172 DNVV-----QDTVSDGFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLESGP 2008
            D+       +DT+    G PVG+L+AC++SEAAYSAL QPIS+L  SPLL LK VLE G 
Sbjct: 873  DSSCDSHFREDTIG---GEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLECGS 929

Query: 2007 KRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQTCDMVH 1828
            ++    +T SLFLS+ I +   G EY A+ +KN LER++FSDIVSTVMI F+ Q+  +  
Sbjct: 930  RKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDIVSTVMIIFTPQSRSLEK 989

Query: 1827 FSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHI-LSRGCYV--- 1660
            +SPW+CHFH+ KE + ++ L V SII++L     S  +  K   P   I  +R C V   
Sbjct: 990  YSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVTLPNLKISTNRKCSVHYM 1049

Query: 1659 ------VEPQKEYDVTFCITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDI 1498
                      KE D   CITV +  +  + V ++ VR++++PFLLR  I+G  E KKVDI
Sbjct: 1050 AKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPFLLRTAIKGIFEIKKVDI 1109

Query: 1497 LWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLY 1318
            LW DL   SKS+    GEL+++V +S   +    W  L+N C RIM +IDW RSHPD+++
Sbjct: 1110 LWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHRIMPMIDWARSHPDNIH 1169

Query: 1317 DIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQR 1138
                 +GID  W++F+  L  A SD   SILP+H+ LVA+ LS +GEFVGLNSKG+ +QR
Sbjct: 1170 HFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSASGEFVGLNSKGMARQR 1229

Query: 1137 DLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSG 958
            + AS+SSPF+QACFSNPG++F+KAAK+GV D+L GTLD +AWG  + MGT GQFD++YS 
Sbjct: 1230 NHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGTSGQFDVMYSE 1289

Query: 957  KGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSL-KNLCNKWSAQSLPLNHASRGHVNLK 781
            K  E+A  V+VYD+   S    ++ +     ++   + CN    +     +A +     K
Sbjct: 1290 KVQELAKSVDVYDLLETSFDQLDQEINTSQSNNYSSDKCNS-QFRHKKGRYAPKEPKQWK 1348

Query: 780  CISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGS 601
                SV++   + ND+  ++ + R IL+KY ID  L+E +K  + + L FHP+RN+KLGS
Sbjct: 1349 ----SVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGS 1404

Query: 600  GLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            G Q+IK+G HPK   SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1405 GPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGA 1444


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  693 bits (1789), Expect = 0.0
 Identities = 372/779 (47%), Positives = 509/779 (65%), Gaps = 28/779 (3%)
 Frame = -2

Query: 2733 VHEVSHAYRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKL 2554
            V  ++H  +++  A+ S+ S+ AF+ VFR++ +    +  K+NS +AM KAGSKGN+LKL
Sbjct: 847  VDRLNHERQIS--AAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSKGNLLKL 904

Query: 2553 AQQILCLGLQHSSVPLPFRIPYELSSSTYNLKMSGLR--ESSHDIPDSAESSFPYAIVDN 2380
             Q  +CLGLQHS V L +RIP ELS + +N    GL   E S D  +  +S   +A+V++
Sbjct: 905  VQHSMCLGLQHSLVRLSYRIPRELSCAGWN-SQKGLHSMEMSSDTLEPKQSYIAHAVVES 963

Query: 2379 SFLDGLNPVECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQL 2200
            SFL GLNP+ECFVHS++ RDSSFS+NADLPG+LTR+LMF+MRD+Y AYDGTVRN YGNQL
Sbjct: 964  SFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQL 1023

Query: 2199 VQFSYGVKDDNVVQDTVSDGF--GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKN 2026
            +QFSY  ++D+       +    G PVG+L+AC++SEAAYSAL QPIS+L  SPLL LKN
Sbjct: 1024 IQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKN 1083

Query: 2025 VLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQ 1846
            VLE G ++    +T SLFLS+ I +   G EY A+ +KN LER +FS+IVSTVMI F+ Q
Sbjct: 1084 VLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIFTPQ 1143

Query: 1845 TCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGC 1666
             C  V +SPW+CHFH+ KE + ++ L V SII++L     S     K   P   I S+  
Sbjct: 1144 HCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESKVILPSLKISSKSG 1203

Query: 1665 YVVEPQK----------------------EYDVTFCITVAVEISNGSVVLMETVRDLVVP 1552
              VE ++                      E D   CITVAV   + + V +++VR  ++P
Sbjct: 1204 REVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAVVEDSKNSVQLDSVRKSLIP 1263

Query: 1551 FLLRKVIRGFLEFKKVDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKC 1372
            FLL+  I+GFLE KKVDILW DLP  +KS+    GEL+++V +S   +    W  L+N C
Sbjct: 1264 FLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNGTFWGRLINHC 1323

Query: 1371 LRIMHLIDWKRSHPDDLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCL 1192
             RIM LIDW RSHPD+++     +GID  W+++   L  A SD  KSILP+H+ LVA+ L
Sbjct: 1324 HRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKHLRLVANSL 1383

Query: 1191 SVTGEFVGLNSKGIKQQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAW 1012
            S +GEFVGLN+KG+ +QR  AS+SSPF+QACFSNPG+SF+KAAK+G+ D+L G LDA+AW
Sbjct: 1384 SASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQGNLDALAW 1443

Query: 1011 GRQVPMGTGGQFDIIYSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWS 832
            G  +PMGTGGQFDIIYS K  E+   V+VY +   S    + + ++ +P S K    K S
Sbjct: 1444 GNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSF--NQMDQEINIPQSRKYSSGKCS 1501

Query: 831  AQSLPLN--HASRGHVNLKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEK 658
            +     N  +  +     K    SV++   + ND+  ++   R IL+KY ID  L+E +K
Sbjct: 1502 SDFRSKNGGYTPKEPKQWK----SVLRNFMTANDIQRLTFDARVILNKYQIDETLSETDK 1557

Query: 657  SILTEALQFHPQRNDKLGSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
              + + L FHP+R++K GSG QNIK+G HP+   SRCF +IRKDG++ DFSYRKC++GA
Sbjct: 1558 LTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCILGA 1616


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  688 bits (1775), Expect = 0.0
 Identities = 371/757 (49%), Positives = 509/757 (67%), Gaps = 13/757 (1%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y+  K A+LS+V++ A KE FRD+ N    Y   +NSL+AM KAGSKGNMLKL Q  +CL
Sbjct: 680  YQKQKTAALSQVTVDAIKEGFRDVQNLAYKYAGVDNSLLAMFKAGSKGNMLKLVQHCMCL 739

Query: 2532 GLQHSSVPLPFRIPYELSSSTYN-LKMSGLRESSHDIPDSAESSFPYAIVDNSFLDGLNP 2356
            GLQHS VPL F+ P +LS   +N  K  G+ +      +S ES  P A+V +SFL GLNP
Sbjct: 740  GLQHSLVPLSFKFPNQLSCDAWNDQKARGIVQEVGRNFESIESYIPSAVVKSSFLTGLNP 799

Query: 2355 VECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVK 2176
            VECFVHS++ RD SFS NA+LPG+L RKLM++MRDL+ AYDGTVRNAYGNQL+QFSY + 
Sbjct: 800  VECFVHSVTSRDGSFSNNAELPGTLNRKLMYFMRDLHTAYDGTVRNAYGNQLIQFSYDID 859

Query: 2175 DDNVVQDTVSD----------GFGAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKN 2026
            +     D+ ++          G   PVG+L+AC+ISEAAYSALDQP+S+L  SPLL LKN
Sbjct: 860  EGISTADSTTNSSYAKSVINCGGSQPVGALSACAISEAAYSALDQPVSLLEASPLLNLKN 919

Query: 2025 VLESGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFSQQ 1846
            +LE G KR+SA +T SLFLS  ++R  +G EYGA+ +KN LE + FSDIVSTVMI FS Q
Sbjct: 920  ILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYGALEVKNHLEGLNFSDIVSTVMIMFSSQ 979

Query: 1845 TCDMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGC 1666
            +   + FSPW+ HFH+ KE +R++ L VQSIIEAL   C S+    K       I+ R C
Sbjct: 980  SGSKMRFSPWVSHFHISKEIVRRRRLNVQSIIEALYAMCNSAGADLKIM-----IIGREC 1034

Query: 1665 YVVEPQKEYDVTFCITVAV-EISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKVDILWN 1489
                   +   TFCI+V + E  N S   ++  R LV+PFLL+ V++GFLE KKVDILW 
Sbjct: 1035 DCCSTPND---TFCISVTLTEKYNNSSKELDKTRVLVIPFLLKTVVKGFLEIKKVDILWI 1091

Query: 1488 DLPLASKSHENYCGELFVKVYLS-ESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDDLYDI 1312
            D P +S       GEL ++V +S ++ +    WN+L++ C+ +M +IDW RSHPD+++DI
Sbjct: 1092 DRPGSS-------GELCLRVSMSGKTRKGTTLWNMLMDDCIPVMDMIDWSRSHPDNVHDI 1144

Query: 1311 FCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQQRDL 1132
               YGIDV  ++F+ +L+ A  D+ K+ILP+H+LLVADCLS TGEFV LN+KGI QQ + 
Sbjct: 1145 CTAYGIDVGQKHFLNKLESATKDVGKTILPQHLLLVADCLSATGEFVSLNAKGIGQQLEH 1204

Query: 1131 ASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIYSGKG 952
            AS+ +PFMQACFS PG   +KAAK GV D+L G+LDA+ WG    +G+GGQFDII+S KG
Sbjct: 1205 ASVIAPFMQACFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTPSLGSGGQFDIIFS-KG 1263

Query: 951  HEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNLKCIS 772
               + P+ VYD+ S+ +I+  +N   ++  +  +L +K+ A ++  N   R     + I+
Sbjct: 1264 PVSSKPIKVYDLLSSQIITNPQN-GFEMSDAPIHLSDKFVAPNMYKNGYLR---KWESIT 1319

Query: 771  DSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLGSGLQ 592
             SV++E  +  D+  +S +L+ IL KY ++  +N+ +K +L   L+FHP  + K+G G++
Sbjct: 1320 KSVLRENLTIQDIDRLSQALKNILQKYDVNERINDMDKQVLMMVLRFHPHGDRKIGLGIK 1379

Query: 591  NIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
             +K+G HP H+  RCFML+R DGTI D SY KC+ GA
Sbjct: 1380 EVKVGHHPDHENVRCFMLVRTDGTIEDVSYHKCICGA 1416


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  672 bits (1734), Expect = 0.0
 Identities = 354/761 (46%), Positives = 500/761 (65%), Gaps = 17/761 (2%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     ASLS+ S+ AF++VFR++ +    Y  K NS +AM KAGSKGN+LKL Q  +CL
Sbjct: 686  YERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCL 745

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLK--MSGLRESSHDIPDSAESSFPYAIVDNSFLDGLN 2359
            G+Q+S V L +R+P  LS + +N +  +  ++ SS  + +S +S  PYA+V++SFL GLN
Sbjct: 746  GMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL-ESVQSYIPYAVVESSFLTGLN 804

Query: 2358 PVECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGV 2179
            P+ECFVHS++ RDSSFS++ADLPG+LTR+LMF+MRDLY AYDGTVRN YGNQL+QFSY +
Sbjct: 805  PLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDI 864

Query: 2178 KDDNVVQDTVSDGF------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLE 2017
            ++D+    + + GF      G  VG+++AC+ISEAAYSAL QP+S+L TSPLL LKNVLE
Sbjct: 865  EEDS----SCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLE 920

Query: 2016 SGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFS-QQTC 1840
             G ++ +  +T SLFLS+ + +  +G EY A+ +KN LER+LFS+IVS VMI F+   + 
Sbjct: 921  CGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSR 980

Query: 1839 DMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILSRGCYV 1660
                +SPW+CHFH+ KE + ++ L V SII++L    YS  +  K       I SR C  
Sbjct: 981  SQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSRKCSA 1040

Query: 1659 VEPQKEYDVTF--------CITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKKV 1504
                KE + T         CI V +  ++ + + +++VRDLV+PFLL   I+GFL+ KKV
Sbjct: 1041 DSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFLLGTAIQGFLDVKKV 1100

Query: 1503 DILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPDD 1324
            DILWN+    + S   + GEL+++V LS      + W +LL  C +IMH+IDW RSH D+
Sbjct: 1101 DILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDN 1160

Query: 1323 LYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIKQ 1144
            +      YGID  W+YF   L  A SD  KSILP+H+ LVA+ LS +GEFVGLN+KG+  
Sbjct: 1161 INHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMAL 1220

Query: 1143 QRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDIIY 964
            QR  AS+SSPF+QACF+NPG+ FIKAAK+G  D+L G+LD +AWG  + MGT G FD+IY
Sbjct: 1221 QRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIY 1280

Query: 963  SGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVNL 784
            S KGH+VA  V+VY++   S       +   +     + C           H +   +  
Sbjct: 1281 SEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGS------EFRHKNGYALKE 1334

Query: 783  KCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKLG 604
                 ++++   + ND+  ++ + R IL+KYSID  L+E+++S +   L FHP +++K G
Sbjct: 1335 GKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFG 1394

Query: 603  SGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
             G Q+IK+G HPK++ SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1395 IGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGA 1435


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  667 bits (1722), Expect = 0.0
 Identities = 354/762 (46%), Positives = 500/762 (65%), Gaps = 18/762 (2%)
 Frame = -2

Query: 2712 YRLNKKASLSKVSIGAFKEVFRDLLNQITVYGSKNNSLIAMVKAGSKGNMLKLAQQILCL 2533
            Y     ASLS+ S+ AF++VFR++ +    Y  K NS +AM KAGSKGN+LKL Q  +CL
Sbjct: 609  YERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCL 668

Query: 2532 GLQHSSVPLPFRIPYELSSSTYNLK--MSGLRESSHDIPDSAESSFPYAIVDNSFLDGLN 2359
            G+Q+S V L +R+P  LS + +N +  +  ++ SS  + +S +S  PYA+V++SFL GLN
Sbjct: 669  GMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL-ESVQSYIPYAVVESSFLTGLN 727

Query: 2358 PVECFVHSLSCRDSSFSENADLPGSLTRKLMFYMRDLYLAYDGTVRNAYGNQLVQFSYGV 2179
            P+ECFVHS++ RDSSFS++ADLPG+LTR+LMF+MRDLY AYDGTVRN YGNQL+QFSY +
Sbjct: 728  PLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDI 787

Query: 2178 KDDNVVQDTVSDGF------GAPVGSLAACSISEAAYSALDQPISILVTSPLLCLKNVLE 2017
            ++D+    + + GF      G  VG+++AC+ISEAAYSAL QP+S+L TSPLL LKNVLE
Sbjct: 788  EEDS----SCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLE 843

Query: 2016 SGPKRTSAHRTFSLFLSKDIERWLYGIEYGAITIKNSLERVLFSDIVSTVMIEFS-QQTC 1840
             G ++ +  +T SLFLS+ + +  +G EY A+ +KN LER+LFS+IVS VMI F+   + 
Sbjct: 844  CGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSR 903

Query: 1839 DMVHFSPWICHFHVCKERMRKKGLTVQSIIEALNWNCYSSEEIQKANPPKWHILS-RGCY 1663
                +SPW+CHFH+ KE + ++ L V SII++L    YS  +  K       I S R C 
Sbjct: 904  SQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSSRKCS 963

Query: 1662 VVEPQKEYDVTF--------CITVAVEISNGSVVLMETVRDLVVPFLLRKVIRGFLEFKK 1507
                 KE + T         CI V +  ++ + + +++VRDLV+PFLL   I+GFL+ KK
Sbjct: 964  ADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFLLGTAIQGFLDVKK 1023

Query: 1506 VDILWNDLPLASKSHENYCGELFVKVYLSESCEIRKCWNLLLNKCLRIMHLIDWKRSHPD 1327
            VDILWN+    + S   + GEL+++V LS      + W +LL  C +IMH+IDW RSH D
Sbjct: 1024 VDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTD 1083

Query: 1326 DLYDIFCVYGIDVAWEYFMRRLKLAVSDIRKSILPEHMLLVADCLSVTGEFVGLNSKGIK 1147
            ++      YGID  W+YF   L  A SD  KSILP+H+ LVA+ LS +GEFVGLN+KG+ 
Sbjct: 1084 NINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMA 1143

Query: 1146 QQRDLASISSPFMQACFSNPGASFIKAAKTGVKDDLLGTLDAVAWGRQVPMGTGGQFDII 967
             QR  AS+SSPF+QACF+NPG+ FIKAAK+G  D+L G+LD +AWG  + MGT G FD+I
Sbjct: 1144 LQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVI 1203

Query: 966  YSGKGHEVANPVNVYDMFSNSLISQEKNVKVKVPSSLKNLCNKWSAQSLPLNHASRGHVN 787
            YS KGH+VA  V+VY++   S       +   +     + C           H +   + 
Sbjct: 1204 YSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGS------EFRHKNGYALK 1257

Query: 786  LKCISDSVVKEIHSWNDVVTMSISLREILHKYSIDHFLNENEKSILTEALQFHPQRNDKL 607
                  ++++   + ND+  ++ + R IL+KYSID  L+E+++S +   L FHP +++K 
Sbjct: 1258 EGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKF 1317

Query: 606  GSGLQNIKIGRHPKHQKSRCFMLIRKDGTIVDFSYRKCVMGA 481
            G G Q+IK+G HPK++ SRCF +IR DGT+ DFSYRKC++GA
Sbjct: 1318 GIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGA 1359