BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00035307
         (467 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic...    45   8e-07

>gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
          Length = 882

 Score = 44.7 bits (104), Expect(2) = 8e-07
 Identities = 25/73 (34%), Positives = 38/73 (52%)
 Frame = +3

Query: 6   KLDIWREPLEPIEFKINRTKTEYTKYNFSESRL*KYRWRIVKIFFP*KETVKIEGQEILR 185
           KL++WR+ LE   F+++RTKTEY    FS +R               +E V ++GQ + R
Sbjct: 278 KLELWRQTLESKGFRLSRTKTEYMMCGFSTTRC-------------EEEEVSLDGQVVPR 324

Query: 186 CKIFWCLARLFKK 224
              FW L  L ++
Sbjct: 325 KDTFWYLGSLLQE 337



 Score = 33.9 bits (76), Expect(2) = 8e-07
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 253 IKACWVKWWSIFGVLYDRRIPFQLKPK 333
           IKA W+KW    G+L D+R+P +LK K
Sbjct: 349 IKAGWMKWRQASGILCDKRVPQKLKGK 375