BLASTX nr result
ID: Sinomenium21_contig00035055
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00035055
(1221 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 111 1e-40
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 111 1e-40
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 109 2e-39
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 114 1e-38
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 115 5e-36
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 110 1e-35
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 109 3e-34
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 97 5e-34
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 104 9e-34
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-... 110 2e-33
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 98 3e-31
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A... 100 3e-30
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun... 96 4e-30
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 103 3e-29
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 101 3e-29
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 99 7e-29
emb|CAB83107.1| sigma factor 3 [Sinapis alba] 97 7e-29
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 99 1e-28
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 86 2e-27
ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas... 92 8e-25
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 111 bits (277), Expect(3) = 1e-40
Identities = 72/123 (58%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISGL-LPIVKISK-IYRASYSTPKSSPYSRSRRLVIARNESE 541
EERK + ERA KA I LP I K R S ST K + SR +RL+ A+NE+E
Sbjct: 264 EERKSKR--ERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 542 MSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRST 721
MS+GVK V NL RIR LEEE G VAS S+WAEAAGVD+K LQQ+L FG CRD+LLRST
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 722 RSL 730
SL
Sbjct: 382 HSL 384
Score = 75.9 bits (185), Expect(3) = 1e-40
Identities = 41/97 (42%), Positives = 60/97 (61%)
Frame = +1
Query: 70 IHASYSRAQVNNKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLS 249
I AS + Q + S++SLL+EN+ +E++ AD++++RLERDI+ Q+G+L LKLF CLS
Sbjct: 162 ISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLS 221
Query: 250 RILKEPTSVRRPIPVTKLPSSCLVDGVTVDGVRKVTV 360
R LK TS T+ C +G D + KV V
Sbjct: 222 RTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVV 258
Score = 28.5 bits (62), Expect(3) = 1e-40
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
++ARNYR +G+ ED+LQ
Sbjct: 387 YIARNYRGMGVAFEDILQ 404
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 111 bits (277), Expect(3) = 1e-40
Identities = 72/123 (58%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISGL-LPIVKISK-IYRASYSTPKSSPYSRSRRLVIARNESE 541
EERK + ERA KA I LP I K R S ST K + SR +RL+ A+NE+E
Sbjct: 214 EERKSKR--ERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 271
Query: 542 MSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRST 721
MS+GVK V NL RIR LEEE G VAS S+WAEAAGVD+K LQQ+L FG CRD+LLRST
Sbjct: 272 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 331
Query: 722 RSL 730
SL
Sbjct: 332 HSL 334
Score = 75.9 bits (185), Expect(3) = 1e-40
Identities = 41/97 (42%), Positives = 60/97 (61%)
Frame = +1
Query: 70 IHASYSRAQVNNKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLS 249
I AS + Q + S++SLL+EN+ +E++ AD++++RLERDI+ Q+G+L LKLF CLS
Sbjct: 112 ISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLS 171
Query: 250 RILKEPTSVRRPIPVTKLPSSCLVDGVTVDGVRKVTV 360
R LK TS T+ C +G D + KV V
Sbjct: 172 RTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVV 208
Score = 28.5 bits (62), Expect(3) = 1e-40
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
++ARNYR +G+ ED+LQ
Sbjct: 337 YIARNYRGMGVAFEDILQ 354
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 109 bits (273), Expect(3) = 2e-39
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 3/126 (2%)
Frame = +2
Query: 362 TLEERKRENLGERASVKAAKISGLLPIVKI---SKIYRASYSTPKSSPYSRSRRLVIARN 532
T ++ +R++ ERAS + S LP+ S + + S+ K + S+SRRL+IARN
Sbjct: 208 TAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARN 267
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E+EM+RG+K + +L +IRT LEEE+ +V S S WAEAAG+D K LQQ+L FG CRD+L+
Sbjct: 268 EAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELI 327
Query: 713 RSTRSL 730
+STRSL
Sbjct: 328 KSTRSL 333
Score = 72.8 bits (177), Expect(3) = 2e-39
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 109 SRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILKEPTSVRRPI 288
SR+SLL+EN+ +E AD+D +LE DIL Q+GKL LKLFN CL+R L E T+V
Sbjct: 123 SRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTL-ETTNVLEVS 181
Query: 289 PV-TKLPSSCLVDGVTVDGVRKVTVH 363
V T++ C ++G +++ KV VH
Sbjct: 182 DVHTEIIGECNINGTSINNQIKVVVH 207
Score = 29.3 bits (64), Expect(3) = 2e-39
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+ ARNYR GI LEDLLQ
Sbjct: 336 YFARNYRGTGIALEDLLQ 353
>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
C, putative [Theobroma cacao]
Length = 848
Score = 114 bits (286), Expect(3) = 1e-38
Identities = 68/123 (55%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISG-LLPIVKI-SKIYRASYSTPKSSPYSRSRRLVIARNESE 541
++++R+ + ERA IS L+P + + + S+ K SRSRRL IARNE+E
Sbjct: 499 KKKQRKKIRERALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAE 558
Query: 542 MSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRST 721
MS+GVK V NL RIRT LEEE+G+ AS S WAEAAGV EK LQQ L FG CRD+LLRST
Sbjct: 559 MSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRST 618
Query: 722 RSL 730
RSL
Sbjct: 619 RSL 621
Score = 66.2 bits (160), Expect(3) = 1e-38
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +1
Query: 76 ASYSRAQVNNKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRI 255
+S + Q S YSLLMEN+ +E+ AD+D++ LER+IL Q+G+ LKLFN CLSR
Sbjct: 402 SSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRT 461
Query: 256 LK 261
LK
Sbjct: 462 LK 463
Score = 27.7 bits (60), Expect(3) = 1e-38
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+ ARNYR LGI EDL+Q
Sbjct: 624 YFARNYRGLGIAHEDLIQ 641
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
tuberosum]
Length = 555
Score = 115 bits (289), Expect(3) = 5e-36
Identities = 64/123 (52%), Positives = 90/123 (73%), Gaps = 2/123 (1%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISGLLPIVKISK--IYRASYSTPKSSPYSRSRRLVIARNESE 541
++++R++ RAS A I + P K + + + + + K + SR++R IA+NE+E
Sbjct: 207 KKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAE 266
Query: 542 MSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRST 721
MSRGVK V L RIR+ LEEE+G+VA+FSSWAEAAG+++KELQQRLHFG CRD+LL+ST
Sbjct: 267 MSRGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDELLKST 326
Query: 722 RSL 730
RSL
Sbjct: 327 RSL 329
Score = 54.3 bits (129), Expect(3) = 5e-36
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = +1
Query: 115 YSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+SLLM+N+ +E++ AD+++ RLERDIL Q+ KL L+ F+ CLSR
Sbjct: 122 FSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSR 167
Score = 30.0 bits (66), Expect(3) = 5e-36
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LARNYR LG+ EDL+Q
Sbjct: 332 YLARNYRGLGVAFEDLIQ 349
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 110 bits (276), Expect(3) = 1e-35
Identities = 57/121 (47%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Frame = +2
Query: 371 ERKRENLGERASVKAAKISGLLPIVKISKIYRA-SYSTPKSSPYSRSRRLVIARNESEMS 547
+++ + +R S + K SG LP+ ++ + ++ + S+ + + SRSRRL++A+NE+EMS
Sbjct: 197 KKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRASNSRSRRLMMAKNEAEMS 256
Query: 548 RGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRSTRS 727
GVK + +L R++ LE+E+GKV + WAEAAGVDEK LQQ+LHFG C+D+L+RSTRS
Sbjct: 257 VGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRS 316
Query: 728 L 730
L
Sbjct: 317 L 317
Score = 57.0 bits (136), Expect(3) = 1e-35
Identities = 25/51 (49%), Positives = 38/51 (74%)
Frame = +1
Query: 109 SRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILK 261
S Y+LL++N+ +E+ AD+ + +LE++IL Q+G+L LKLF CLSR LK
Sbjct: 117 SHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLK 167
Score = 31.2 bits (69), Expect(3) = 1e-35
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LARNYR LG+ L+DLLQ
Sbjct: 320 YLARNYRGLGVALDDLLQ 337
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 109 bits (273), Expect(3) = 3e-34
Identities = 61/123 (49%), Positives = 89/123 (72%), Gaps = 2/123 (1%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISGLLPIVKISK--IYRASYSTPKSSPYSRSRRLVIARNESE 541
++++R + +RAS A I + P K + + + + + K + SR++R IA+NE+E
Sbjct: 203 KKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQLKFYSGKRTHASRTKRQKIAKNEAE 262
Query: 542 MSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRST 721
MS+GVK V L RIR+ LEEE+G+VA+FSSWA+AAG+++KELQQ LHFG CRD+LL+ST
Sbjct: 263 MSKGVKLVAQLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKST 322
Query: 722 RSL 730
RSL
Sbjct: 323 RSL 325
Score = 54.3 bits (129), Expect(3) = 3e-34
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = +1
Query: 115 YSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+SLLM+N+ +E++ AD+++ RLERDIL Q+ KL L+ F+ CLSR
Sbjct: 118 FSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSR 163
Score = 30.0 bits (66), Expect(3) = 3e-34
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LARNYR LG+ EDL+Q
Sbjct: 328 YLARNYRGLGVAFEDLIQ 345
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 97.1 bits (240), Expect(3) = 5e-34
Identities = 61/126 (48%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Frame = +2
Query: 368 EERK--RENLGERASVKAAKISGLLPIVKISKIYRASYSTP---KSSPYSRSRRLVIARN 532
EERK RE K +S LP SK + + P K + S SRR +IARN
Sbjct: 213 EERKFRRERAASDNGKKTTSLS--LP----SKTVQNNLPKPTFVKRTSSSSSRRSLIARN 266
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E++M+RGVK ++L RIRT LEEE+G+V S S WAEA G+D+K LQQ+L FG CRD+L+
Sbjct: 267 EAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELI 326
Query: 713 RSTRSL 730
++T SL
Sbjct: 327 KNTHSL 332
Score = 66.6 bits (161), Expect(3) = 5e-34
Identities = 36/97 (37%), Positives = 54/97 (55%)
Frame = +1
Query: 70 IHASYSRAQVNNKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLS 249
I S++R + SR S L++N+ +E ++AD D ++LERDIL Q+G+L L+ FNACLS
Sbjct: 111 ISTSHTRLRERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLS 170
Query: 250 RILKEPTSVRRPIPVTKLPSSCLVDGVTVDGVRKVTV 360
R L+ + T+ DG+ D K V
Sbjct: 171 RTLQTSNVLDLSAVPTENTGESKTDGMLGDLTGKTVV 207
Score = 29.6 bits (65), Expect(3) = 5e-34
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
++ARNYR +GI +EDL+Q
Sbjct: 335 YIARNYRGMGIAMEDLIQ 352
>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
Length = 478
Score = 104 bits (259), Expect(3) = 9e-34
Identities = 57/120 (47%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Frame = +2
Query: 374 RKRENLGERASVKAAKISGLLPIVKISK-IYRASYSTPKSSPYSRSRRLVIARNESEMSR 550
RKR + E +++ + P ISK + + ++ +P SR++R ARNE++MS
Sbjct: 137 RKRTSDNESPTIQES------PSKTISKDLQQLKFAIAGRTPRSRNKRQKTARNEADMSS 190
Query: 551 GVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRSTRSL 730
GVK V L +IRT LE+E+G++AS S+WAEAAG+ +KELQQ LH+G CRD+LLRST SL
Sbjct: 191 GVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDELLRSTHSL 250
Score = 60.1 bits (144), Expect(3) = 9e-34
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +1
Query: 94 QVNNKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILKEPTS 273
Q S+ LLM+N+ +ED+ AD++ +RLE DIL Q+ +L L+LF++CLSR +K TS
Sbjct: 48 QATQASKLRLLMKNLDVLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTS 107
Query: 274 VRRPIPVTKLPSSCLV 321
T++ C V
Sbjct: 108 FDLSDGPTEIVEECKV 123
Score = 28.1 bits (61), Expect(3) = 9e-34
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
F+ARNY LG+ EDL+Q
Sbjct: 253 FIARNYSGLGVAFEDLIQ 270
>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 110 bits (276), Expect(3) = 2e-33
Identities = 62/127 (48%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
Frame = +2
Query: 356 LFTLEERKRENLGERASVKAAKISGLLPIVKI--SKIYRASYSTPKSSPYSRSRRLVIAR 529
+++ ++ R ++ +RA A KI+ L + KI+R++ + K S S RRL++A
Sbjct: 208 VYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAI 267
Query: 530 NESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKL 709
NE+EMS GVK V NL RIR LE+ESG++AS S WAEAA VD K+LQ++L FG CRD+L
Sbjct: 268 NEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDEL 327
Query: 710 LRSTRSL 730
LRST SL
Sbjct: 328 LRSTNSL 334
Score = 52.0 bits (123), Expect(3) = 2e-33
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +1
Query: 109 SRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILK 261
S + +LMEN+ +E+ ++ ++ LERDI+ Q+ KL L+ FN CLSR LK
Sbjct: 125 SPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK 175
Score = 28.1 bits (61), Expect(3) = 2e-33
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLA+ YR G+P+EDL+Q
Sbjct: 337 FLAKKYRCSGLPMEDLVQ 354
>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
gi|462419859|gb|EMJ24122.1| hypothetical protein
PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 97.8 bits (242), Expect(3) = 3e-31
Identities = 59/122 (48%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +2
Query: 368 EERKRENLGERASVKAAKISGLLPIVKISK-IYRASYSTPKSSPYSRSRRLVIARNESEM 544
E R R+ + A V S LP I K + + + S+ K + RSRRL I++NE+EM
Sbjct: 211 ERRSRKRTSDNAIVS----SNSLPPKTIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEM 266
Query: 545 SRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRSTR 724
S GVK + +L RI+ LE+E+GKVA+ WAEAAGV EK L Q L FG C+D+L+RSTR
Sbjct: 267 SIGVKVIADLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTR 326
Query: 725 SL 730
SL
Sbjct: 327 SL 328
Score = 55.8 bits (133), Expect(3) = 3e-31
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = +1
Query: 109 SRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILK 261
S +SLL++N+ +E+ A +D+++LE++IL Q+ +L LKLF+ CLSR LK
Sbjct: 121 SHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLK 171
Score = 30.4 bits (67), Expect(3) = 3e-31
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LARNYR LG+ L+DL+Q
Sbjct: 331 YLARNYRGLGVALDDLMQ 348
>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
gi|548857444|gb|ERN15250.1| hypothetical protein
AMTR_s00056p00209700 [Amborella trichopoda]
Length = 529
Score = 99.8 bits (247), Expect(3) = 3e-30
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 2/122 (1%)
Frame = +2
Query: 371 ERK--RENLGERASVKAAKISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARNESEM 544
ERK RE ++ + + S L + K +K A+ + S+SR + A++E EM
Sbjct: 181 ERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLRAQSEVEM 240
Query: 545 SRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRSTR 724
SRGV++V L +IR NLEE G+ ASFS WAEAAG++EK L+Q+LHFG CRDKLLRSTR
Sbjct: 241 SRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRDKLLRSTR 300
Query: 725 SL 730
L
Sbjct: 301 PL 302
Score = 55.5 bits (132), Expect(3) = 3e-30
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +1
Query: 115 YSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILKEP 267
+S L EN+ KIE II D+ RLER+IL I +L LKLF+A LSR LK+P
Sbjct: 97 FSFLFENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLKDP 147
Score = 25.4 bits (54), Expect(3) = 3e-30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LA++YR GI EDLLQ
Sbjct: 305 YLAKSYRGRGIGFEDLLQ 322
>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
factor [Medicago truncatula]
Length = 549
Score = 95.9 bits (237), Expect(3) = 4e-30
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 2/130 (1%)
Frame = +2
Query: 347 GR*LFTLEERKRENLGERASVKAAKISGLLPIVKISK--IYRASYSTPKSSPYSRSRRLV 520
G+ + +RK +R SV A S LP+ + + + S K + ++++R V
Sbjct: 198 GKVIVHSSKRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAV 257
Query: 521 IARNESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCR 700
IA+ E EMS+GVK + L +IRT +EE++ +V S SSWAE +GVDEK LQQ+L+ G CR
Sbjct: 258 IAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCR 317
Query: 701 DKLLRSTRSL 730
D+L+RSTRSL
Sbjct: 318 DELIRSTRSL 327
Score = 54.7 bits (130), Expect(3) = 4e-30
Identities = 23/48 (47%), Positives = 37/48 (77%)
Frame = +1
Query: 106 KSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLS 249
+S + LLMEN+G +E+ AD++ +RLE++I+ Q+ KL L+LFN CL+
Sbjct: 118 ESHFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLT 165
Score = 29.6 bits (65), Expect(3) = 4e-30
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQV 780
+ AR YR +GI LEDLLQV
Sbjct: 330 YFARKYRGMGIALEDLLQV 348
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 103 bits (257), Expect(3) = 3e-29
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Frame = +2
Query: 356 LFTLEERKRENLGERASVKAAK-ISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARN 532
+F RK + R+SV G LPI + + P R +R I+RN
Sbjct: 228 VFVSSRRKLKKKASRSSVTGENGDQGSLPIELRTTWNNIDVPRVRRPPKYRKKRERISRN 287
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E+EMS GVK V ++ RIRT LEEESGKVAS S WAEAAG++EK L + LH+G CRD+LL
Sbjct: 288 EAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELL 347
Query: 713 RSTRSL 730
+STRSL
Sbjct: 348 KSTRSL 353
Score = 43.1 bits (100), Expect(3) = 3e-29
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 112 RYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+Y+LL +N+ +E+ + D + +ERDI+ Q+GKL + F CLSR
Sbjct: 157 QYNLLAKNLIALEETFSALDSLGMERDIMFQMGKLGATEFFKTCLSR 203
Score = 30.4 bits (67), Expect(3) = 3e-29
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLARNYR LGI EDL+Q
Sbjct: 356 FLARNYRGLGIAHEDLIQ 373
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 101 bits (251), Expect(3) = 3e-29
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Frame = +2
Query: 356 LFTLEERKRENLGERASVKAAK-ISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARN 532
+F RK + R++V A G LP+ + + P R +R I++N
Sbjct: 215 VFVSSRRKLKKKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRVRRPPKYRKKRERISKN 274
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E+EMS GVK V ++ RIRT LEEESGKVAS S WAEAAG++EK L + LH+G CRD+LL
Sbjct: 275 EAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELL 334
Query: 713 RSTRSL 730
+STRSL
Sbjct: 335 KSTRSL 340
Score = 45.4 bits (106), Expect(3) = 3e-29
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 112 RYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+Y+LL +N+ +E+ D R+ERDI+ Q+GKL LF CLSR
Sbjct: 144 QYNLLAKNLLALEETFVALDSARMERDIMLQMGKLGAADLFKTCLSR 190
Score = 30.4 bits (67), Expect(3) = 3e-29
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLARNYR LGI EDL+Q
Sbjct: 343 FLARNYRGLGIAHEDLIQ 360
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC
[Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
C [Arabidopsis thaliana]
Length = 571
Score = 98.6 bits (244), Expect(3) = 7e-29
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Frame = +2
Query: 356 LFTLEERKRENLGERASVKAAK-ISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARN 532
+F RK + R+SV A LPI + + P R +R I+RN
Sbjct: 218 VFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRN 277
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E+EMS GVK V ++ RIRT LEEESGKVAS S WA AAG++EK L + LH+G CRD+L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 713 RSTRSL 730
+STRSL
Sbjct: 338 KSTRSL 343
Score = 47.0 bits (110), Expect(3) = 7e-29
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 112 RYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+Y+LL +N+ +E+ D +R+ERDI+ Q+GKL +LF CLSR
Sbjct: 147 QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSR 193
Score = 30.4 bits (67), Expect(3) = 7e-29
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLARNYR LGI EDL+Q
Sbjct: 346 FLARNYRGLGIAHEDLIQ 363
>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 97.4 bits (241), Expect(3) = 7e-29
Identities = 51/82 (62%), Positives = 64/82 (78%)
Frame = +2
Query: 485 KSSPYSRSRRLVIARNESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKE 664
K S Y R +R I+RNE+EMS+GVK V ++ RIRT LEEE+GKVAS S WAEAAG+++K
Sbjct: 259 KPSKY-RKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKL 317
Query: 665 LQQRLHFGCSCRDKLLRSTRSL 730
L LHFG CRD+L++STRSL
Sbjct: 318 LMHNLHFGWYCRDELVKSTRSL 339
Score = 48.1 bits (113), Expect(3) = 7e-29
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +1
Query: 112 RYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRILKEPTSVRRPIP 291
+Y+LL +N+ +E D +R+ERDI+ Q+ KL +LFN CLSR +S +P
Sbjct: 145 QYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSR--SRVSSATSCLP 202
Query: 292 VTKLPSSCLVDGVTVDGVRKVTVH 363
T P LVD T + +K VH
Sbjct: 203 DTGTPE--LVDDTTQE--QKTFVH 222
Score = 30.4 bits (67), Expect(3) = 7e-29
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLARNYR LGI EDL+Q
Sbjct: 342 FLARNYRGLGIAHEDLIQ 359
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 98.6 bits (244), Expect(3) = 1e-28
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Frame = +2
Query: 356 LFTLEERKRENLGERASVKAAK-ISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARN 532
+F RK + R+SV A LPI + + P R +R I+RN
Sbjct: 218 VFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRN 277
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E+EMS GVK V ++ RIRT LEEESGKVAS S WA AAG++EK L + LH+G CRD+L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 713 RSTRSL 730
+STRSL
Sbjct: 338 KSTRSL 343
Score = 47.0 bits (110), Expect(3) = 1e-28
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 112 RYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSR 252
+Y+LL +N+ +E+ D +R+ERDI+ Q+GKL +LF CLSR
Sbjct: 147 QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSR 193
Score = 29.6 bits (65), Expect(3) = 1e-28
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
FLARNYR +GI EDL+Q
Sbjct: 346 FLARNYRGMGIAHEDLIQ 363
>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
Length = 545
Score = 85.5 bits (210), Expect(3) = 2e-27
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Frame = +2
Query: 365 LEERKRENLGER--ASVKAAKISGLLPIVKISKI--YRASYSTPKSSPYSRSRRLVIARN 532
++ +++EN R ASV LP+ ++ R S K + +RR VIA+
Sbjct: 194 VQSKRKENRTRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQR 253
Query: 533 ESEMSRGVKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLL 712
E EMS+GVK + L +++T +EE++ + S SSWAEA+GVDE LQ++L+ G CRD+L+
Sbjct: 254 EVEMSKGVKVLAELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELI 313
Query: 713 RSTRSL 730
RSTRSL
Sbjct: 314 RSTRSL 319
Score = 55.8 bits (133), Expect(3) = 2e-27
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 LKVIHASYSRAQVN-NKSRYSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFN 237
L +H Q+ + + LLMEN+G +E+ AD++ MRLE+DI+ ++ KL L+LFN
Sbjct: 94 LSSVHEIIDNTQLPFGEPHFGLLMENLGILEETFADSEAMRLEKDIVLKLEKLGALELFN 153
Query: 238 ACLSR 252
CL+R
Sbjct: 154 VCLTR 158
Score = 29.6 bits (65), Expect(3) = 2e-27
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQV 780
+ AR YR +GI LEDLLQV
Sbjct: 322 YFARKYRGMGIALEDLLQV 340
>ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
gi|561034783|gb|ESW33313.1| hypothetical protein
PHAVU_001G059800g [Phaseolus vulgaris]
Length = 538
Score = 91.7 bits (226), Expect(3) = 8e-25
Identities = 52/119 (43%), Positives = 74/119 (62%)
Frame = +2
Query: 374 RKRENLGERASVKAAKISGLLPIVKISKIYRASYSTPKSSPYSRSRRLVIARNESEMSRG 553
RKRE V A L V + S S K + S+++R+++A+ E+EM++G
Sbjct: 199 RKRE-----IGVTAVSSQSLTLKVNQEDLLGFSVSVVKRATNSKNKRMMVAKREAEMAKG 253
Query: 554 VKDVTNLVRIRTNLEEESGKVASFSSWAEAAGVDEKELQQRLHFGCSCRDKLLRSTRSL 730
VK + L +IRT LEE++ +V + WAEA+GVDEK LQQ LH G CRD+L+RS+RSL
Sbjct: 254 VKVLAELEKIRTALEEDTKRVVCLNHWAEASGVDEKVLQQLLHHGYYCRDELVRSSRSL 312
Score = 42.0 bits (97), Expect(3) = 8e-25
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +1
Query: 115 YSLLMENVGKIEDIIADTDLMRLERDILTQIGKLSTLKLFNACLSRI 255
+ LLM+N+ +E+ AD++ +RLE+ I Q+ KL L++FN LS +
Sbjct: 126 FRLLMKNLDVLEEAFADSEALRLEKAIRLQLEKLGALEIFNVYLSLV 172
Score = 28.5 bits (62), Expect(3) = 8e-25
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 724 FLARNYRRLGIPLEDLLQ 777
+LAR YR +GI L+DLLQ
Sbjct: 315 YLARKYRGMGIALDDLLQ 332