BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00033153
         (1591 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   548   e-153
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   530   e-148
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   526   e-147
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   514   e-143
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   510   e-142
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   510   e-142
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   510   e-142
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   508   e-141
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   502   e-139
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   493   e-136
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   493   e-136
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The...   492   e-136
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   490   e-136
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   485   e-134
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   484   e-134
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   483   e-133
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         483   e-133
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   480   e-133
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   478   e-132
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   477   e-132

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  548 bits (1411), Expect = e-153
 Identities = 301/494 (60%), Positives = 356/494 (72%), Gaps = 20/494 (4%)
 Frame = -3

Query: 1424 MSCGGHLLVSANLSCKLDCSISISSVYNISRPIPLRQERREMWRNVAKQAV--------- 1272
            MS G   ++SANL   LD  IS     N  RP PL++    MWRN+AK+A+         
Sbjct: 1    MSSGKTPILSANLGRDLDLIISFEKPTNF-RPNPLKKPT-VMWRNIAKRAIPRAPRKCVY 58

Query: 1271 -----CSR--NLMRVSRNSVIQE--KSRLFDLNKRLIFGFYDTSSRGNGEQSSLEEDTRR 1119
                  SR  + +  S++ +  E  K   F+ +     GF +   R  GE SS E+   R
Sbjct: 59   LDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGR 118

Query: 1118 SSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFE 939
             SF CL+     S F   PK YASVAEAVSSTD EEDVS+ DEI+ LL E+ K++K+   
Sbjct: 119  PSFGCLRNQMGFSGFC--PKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176

Query: 938  FKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMK 759
            FK++++ K+  GM QG+Y  LRRRQV++ETEAWE AAKEYKELL DMCEQKLAPNLPYMK
Sbjct: 177  FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236

Query: 758  SLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 579
            SLFLGWFEPLRD I KEQELC+LGKN+ AYAPYFDQLPADMM+VITMHKL+GLLMTGGEH
Sbjct: 237  SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEH 296

Query: 578  GCARVVQAACQIGEAIEHEARIHRFLER-XXXXXXXXXKADRGEPDAAAKQQERLRKKVT 402
            G  RVVQAAC IG+AIE E RIH FLE+            + G  D    +QE+LRKKVT
Sbjct: 297  GSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVT 356

Query: 401  NLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVD-QSADGTPD 225
            NLMKKQKL   RQIVK  D  KPWG +A+AKVGSRLIELLMQTAYIQPPVD Q AD  PD
Sbjct: 357  NLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPD 416

Query: 224  IRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGY 45
            IRPAF+H+ KTV +++ K+G+R+GVIECDPLV++GLERTARHMVIPY+PMLVPP+ WTGY
Sbjct: 417  IRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGY 476

Query: 44   DKGAYLFLPSYVMR 3
            DKGA+LFLPSYVMR
Sbjct: 477  DKGAHLFLPSYVMR 490


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  530 bits (1366), Expect = e-148
 Identities = 280/444 (63%), Positives = 327/444 (73%), Gaps = 11/444 (2%)
 Frame = -3

Query: 1301 MWRNVAKQAVCSRNLMRVSRNSVIQEK---SRLFDLNKRLIFGFYD--------TSSRGN 1155
            MWRN+AK A  +R L   S++S        SR +  +K       D           R  
Sbjct: 1    MWRNLAKHAY-TRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59

Query: 1154 GEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLL 975
            G  S  +++  R  F   K P N      + KGYAS AEA++S   EED+S VDE++ L+
Sbjct: 60   GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIAS---EEDMSGVDEVQELV 116

Query: 974  EEICKDDKKAFEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMC 795
            EE+ K DK       +KQPKL+GG+ QGK+ +LRRRQ++METEAWE+AAKEY+ELL DMC
Sbjct: 117  EEVNKGDKL------EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMC 170

Query: 794  EQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMH 615
            EQKLAPNLPY+KSLFLGWFEPLRD IA EQ+LC+ GKNR AYAPYFD LPADMMAVITMH
Sbjct: 171  EQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMH 230

Query: 614  KLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADRGEPDAAA 435
            KLMGLLMTG  +G ARVVQAAC IGEAIEHE RI RF+E+           D G  +   
Sbjct: 231  KLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGS-NPVT 289

Query: 434  KQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPP 255
            K+QE+LRKKV+ LMKKQKLQQVRQIVK QD+ KPWGQDA  KVGSRLIELL++TAYIQPP
Sbjct: 290  KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPP 349

Query: 254  VDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPM 75
             DQ  DG PDIRPAF+H+LKTV K++ K  +RYGVIECDPLVR+GLE+TARHMVIPYMPM
Sbjct: 350  ADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPM 409

Query: 74   LVPPINWTGYDKGAYLFLPSYVMR 3
            LVPP+NWTGYDKGAYLFLPSYVMR
Sbjct: 410  LVPPLNWTGYDKGAYLFLPSYVMR 433


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  526 bits (1356), Expect = e-147
 Identities = 269/447 (60%), Positives = 329/447 (73%), Gaps = 14/447 (3%)
 Frame = -3

Query: 1301 MWRNVAKQAVCSR--------------NLMRVSRNSVIQEKSRLFDLNKRLIFGFYDTSS 1164
            +WRN AKQA+  +              +L+ + + SV     + F+L+      F +   
Sbjct: 36   VWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGF 95

Query: 1163 RGNGEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIK 984
            RG G  SS E+   + SF  ++ P   + F   PKGYASVAEAVSSTD EE+VS VDE++
Sbjct: 96   RGKGAISSPEDCMCKPSFWSVRNPIWFNGFC--PKGYASVAEAVSSTDVEEEVSVVDEVQ 153

Query: 983  GLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLE 804
             LL+++  ++K+  ++KQ+ +     GMGQGKY +L+RRQ+++ETEAWE+AAKEY+EL+ 
Sbjct: 154  ELLQQMSIEEKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMM 213

Query: 803  DMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVI 624
            DMCEQKLAPNLPYMKSLFLGWFEPLR+ I KEQ+LC+ GKN+ AYAPY DQLPADMM+VI
Sbjct: 214  DMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVI 273

Query: 623  TMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADRGEPD 444
            TMHKLMGLLMTGGEHG  RVV AAC IGEAIE E RIH+FLE            + GE D
Sbjct: 274  TMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLE-MTRKKKVDKDQENGESD 332

Query: 443  AAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYI 264
            AA K++E+L KKVTNLMKKQKL+ VR IV + D  K W  +A+AKVGSRLIELL QTA+I
Sbjct: 333  AAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFI 392

Query: 263  QPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPY 84
            QPP DQ ADG PDIRPAF+H+ +TV KD+    +RYGVIECDPLV +GLE+TARHMVIPY
Sbjct: 393  QPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPY 452

Query: 83   MPMLVPPINWTGYDKGAYLFLPSYVMR 3
            MPMLVPP+NWTGYDKG Y FLPSYVMR
Sbjct: 453  MPMLVPPLNWTGYDKGGYFFLPSYVMR 479


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  514 bits (1324), Expect = e-143
 Identities = 259/375 (69%), Positives = 306/375 (81%), Gaps = 1/375 (0%)
 Frame = -3

Query: 1124 RRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKD-DKK 948
            R +S     I S+   F    +GYA+ AEA+ ST  EE    VDE++ L+EEI K+ + K
Sbjct: 71   REASCPNYAISSHTFRFFGSTRGYAAAAEALVSTSEEE----VDELQELIEEINKEINVK 126

Query: 947  AFEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLP 768
            + + ++QKQPKLVGGMG GKY  LRRRQ+++ETEAWE AAKEY+ELLEDMCEQKLAPNLP
Sbjct: 127  STDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLP 186

Query: 767  YMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTG 588
            Y+KSLFLGWFEPLRD IA EQ+LC+ GKNRGAYAPYFDQLPA+MMAVITMHKLMGLLMTG
Sbjct: 187  YIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTG 246

Query: 587  GEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKK 408
            G +G ARVVQAAC IGEAIEHE RIH+FL+           ++ G PD  AK+Q+RLRKK
Sbjct: 247  GGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEG-PDPEAKEQDRLRKK 305

Query: 407  VTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTP 228
            V  LMKKQK+QQVR IV+ QD++KPWGQDAQ KVG RLI++L QTAYIQPPVDQ  DG P
Sbjct: 306  VKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAP 365

Query: 227  DIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTG 48
            DIRPAF+H+LK V  ++LK  +RYGVIECDPLVR+G+E+TARHMVIPYMPMLVPP+NWTG
Sbjct: 366  DIRPAFVHTLKCV--ETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTG 423

Query: 47   YDKGAYLFLPSYVMR 3
            Y++GAYLFLPSY+MR
Sbjct: 424  YERGAYLFLPSYMMR 438


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  510 bits (1313), Expect = e-142
 Identities = 273/447 (61%), Positives = 336/447 (75%), Gaps = 14/447 (3%)
 Frame = -3

Query: 1301 MWRNVAKQAVC---------SRNLMRVSRNSVIQEKSRL--FDLNKRLIFGFYDTSSRGN 1155
            MWRNVAKQA+          + + + +S++S+++EK +    D+  R   G ++  S   
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPR---GIHEVGSGRI 103

Query: 1154 GEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLL 975
            GE  + E+   R+SF  LK   N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ LL
Sbjct: 104  GEILNHEDYMGRTSFGVLK---NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQELL 158

Query: 974  EEICKDDKKAFEFKQQKQPKLVG-GMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDM 798
            +E+ K++++  E    +  + V  GMG GKY++L+ RQV++ETEAWEQAA EY+ELL DM
Sbjct: 159  QEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDM 218

Query: 797  CEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITM 618
            CEQKLAPNLPYMKSLFLGWFEPLRD IAKEQE C++ K++ AYAPYFDQLPADMMAVITM
Sbjct: 219  CEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITM 278

Query: 617  HKLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADR--GEPD 444
            HKLMGLLMTGGEHG ARVVQAAC IG+AIE E RIH+FLE+         K D    E +
Sbjct: 279  HKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESN 338

Query: 443  AAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYI 264
                +QE+LRKKVT+L+KKQKL  VR+IVK QD+ KPWGQDA+AKVGSR+IELL QTAYI
Sbjct: 339  TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398

Query: 263  QPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPY 84
            Q P DQ  D  PDI PAF H+L+TV+K++    K+YGVIEC+PLV +GLERTARHMVIPY
Sbjct: 399  QSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458

Query: 83   MPMLVPPINWTGYDKGAYLFLPSYVMR 3
            MPMLVPP+ WTGYDKGA+ FLPSYVMR
Sbjct: 459  MPMLVPPVKWTGYDKGAHFFLPSYVMR 485


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  510 bits (1313), Expect = e-142
 Identities = 273/447 (61%), Positives = 336/447 (75%), Gaps = 14/447 (3%)
 Frame = -3

Query: 1301 MWRNVAKQAVC---------SRNLMRVSRNSVIQEKSRL--FDLNKRLIFGFYDTSSRGN 1155
            MWRNVAKQA+          + + + +S++S+++EK +    D+  R   G ++  S   
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPR---GIHEVGSGRI 103

Query: 1154 GEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLL 975
            GE  + E+   R+SF  LK   N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ LL
Sbjct: 104  GEILNHEDYMGRTSFGVLK---NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQELL 158

Query: 974  EEICKDDKKAFEFKQQKQPKLVG-GMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDM 798
            +E+ K++++  E    +  + V  GMG GKY++L+ RQV++ETEAWEQAA EY+ELL DM
Sbjct: 159  QEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDM 218

Query: 797  CEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITM 618
            CEQKLAPNLPYMKSLFLGWFEPLRD IAKEQE C++ K++ AYAPYFDQLPADMMAVITM
Sbjct: 219  CEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITM 278

Query: 617  HKLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADR--GEPD 444
            HKLMGLLMTGGEHG ARVVQAAC IG+AIE E RIH+FLE+         K D    E +
Sbjct: 279  HKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESN 338

Query: 443  AAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYI 264
                +QE+LRKKVT+L+KKQKL  VR+IVK QD+ KPWGQDA+AKVGSR+IELL QTAYI
Sbjct: 339  TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398

Query: 263  QPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPY 84
            Q P DQ  D  PDI PAF H+L+TV+K++    K+YGVIEC+PLV +GLERTARHMVIPY
Sbjct: 399  QSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458

Query: 83   MPMLVPPINWTGYDKGAYLFLPSYVMR 3
            MPMLVPP+ WTGYDKGA+ FLPSYVMR
Sbjct: 459  MPMLVPPVKWTGYDKGAHFFLPSYVMR 485


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  510 bits (1313), Expect = e-142
 Identities = 273/447 (61%), Positives = 336/447 (75%), Gaps = 14/447 (3%)
 Frame = -3

Query: 1301 MWRNVAKQAVC---------SRNLMRVSRNSVIQEKSRL--FDLNKRLIFGFYDTSSRGN 1155
            MWRNVAKQA+          + + + +S++S+++EK +    D+  R   G ++  S   
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPR---GIHEVGSGRI 103

Query: 1154 GEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLL 975
            GE  + E+   R+SF  LK   N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ LL
Sbjct: 104  GEILNHEDYMGRTSFGVLK---NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQELL 158

Query: 974  EEICKDDKKAFEFKQQKQPKLVG-GMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDM 798
            +E+ K++++  E    +  + V  GMG GKY++L+ RQV++ETEAWEQAA EY+ELL DM
Sbjct: 159  QEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDM 218

Query: 797  CEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITM 618
            CEQKLAPNLPYMKSLFLGWFEPLRD IAKEQE C++ K++ AYAPYFDQLPADMMAVITM
Sbjct: 219  CEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITM 278

Query: 617  HKLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADR--GEPD 444
            HKLMGLLMTGGEHG ARVVQAAC IG+AIE E RIH+FLE+         K D    E +
Sbjct: 279  HKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESN 338

Query: 443  AAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYI 264
                +QE+LRKKVT+L+KKQKL  VR+IVK QD+ KPWGQDA+AKVGSR+IELL QTAYI
Sbjct: 339  TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398

Query: 263  QPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPY 84
            Q P DQ  D  PDI PAF H+L+TV+K++    K+YGVIEC+PLV +GLERTARHMVIPY
Sbjct: 399  QSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458

Query: 83   MPMLVPPINWTGYDKGAYLFLPSYVMR 3
            MPMLVPP+ WTGYDKGA+ FLPSYVMR
Sbjct: 459  MPMLVPPVKWTGYDKGAHFFLPSYVMR 485


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  508 bits (1308), Expect = e-141
 Identities = 271/446 (60%), Positives = 335/446 (75%), Gaps = 13/446 (2%)
 Frame = -3

Query: 1301 MWRNVAKQAVC---------SRNLMRVSRNSVIQEKSRL--FDLNKRLIFGFYDTSSRGN 1155
            MWRNVAKQA+          + + + +S++S+++EK +    D+  R   G ++  S   
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPR---GIHEVGSGRI 103

Query: 1154 GEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLL 975
            GE  + E+   R+SF  LK   N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ LL
Sbjct: 104  GEILNHEDYMGRTSFGVLK---NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQELL 158

Query: 974  EEICKDDKKAFEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMC 795
            +E+ K+ +       + + ++  GMG GKY++L+ RQV++ETEAWE+AA EY+ELL DMC
Sbjct: 159  QEMKKEQQSG---GGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMC 215

Query: 794  EQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMH 615
            EQKLAPNLPYMKSLFLGWFEPLRD IAKEQE C++ K++ AYAPYFDQLPADMMAVITMH
Sbjct: 216  EQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMH 275

Query: 614  KLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADR--GEPDA 441
            KLMGLLMTGGEHG ARVVQAAC IG+AIE E RIH+FLE+         K D    E + 
Sbjct: 276  KLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNT 335

Query: 440  AAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQ 261
               +QE+LRKKVT+L+KKQKL  VR+IVK QD+ KPWGQDA+AKVGSR+IELL QTAYIQ
Sbjct: 336  VTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ 395

Query: 260  PPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPYM 81
             P DQ AD  PDI PAF H+L+TV+K++    K+YGVIEC+PLV +GLERTARHMVIPYM
Sbjct: 396  SPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM 455

Query: 80   PMLVPPINWTGYDKGAYLFLPSYVMR 3
            PMLVPP+ WTGYDKGA+ FLPSYVMR
Sbjct: 456  PMLVPPVKWTGYDKGAHFFLPSYVMR 481


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  502 bits (1292), Expect = e-139
 Identities = 268/468 (57%), Positives = 330/468 (70%), Gaps = 35/468 (7%)
 Frame = -3

Query: 1301 MWRNVAKQAVC--------------SRNLMRVSRNSVIQEKSRLFDL-----NKRLIFGF 1179
            MWRN+AKQ                 S   M  S+ S   +K+R F+      N+ L+ GF
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 1178 YDTSSRGNGEQSSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSS 999
                 R  G+ +S +E+  R S      P  IS F ++ KGYASVAEA++STD EED S 
Sbjct: 61   -----RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSG 115

Query: 998  VDEIKGLLEEICKDDKKA-FEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKE 822
             +EI+ +LE++ +++      FKQ K  ++V GMG GKY LLR+RQ+++ETEAW++AAKE
Sbjct: 116  SEEIQEMLEDLIRENNMVESHFKQPK--RVVVGMGVGKYNLLRKRQIKLETEAWQEAAKE 173

Query: 821  YKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPA 642
            Y+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA +Q+ C+   +R ++APYFD LPA
Sbjct: 174  YQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPA 233

Query: 641  DMMAVITMHKLMGLLMTG-GEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXK 465
            D MAVITMHKLMGLLMT  G  G  RVVQAAC IGEAIEHE RIHRFLE+         K
Sbjct: 234  DKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDK 293

Query: 464  ADRG--------------EPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWG 327
                              E +   K+QERLRKKV  L+K+QK+QQVR IVKEQ+++KPWG
Sbjct: 294  KAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWG 353

Query: 326  QDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVI 147
            Q+A  KVG RLI+LLM TAYIQPPVDQ  DG PDIRPAF+H+LKT+T+D+ K  +RYGVI
Sbjct: 354  QEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVI 413

Query: 146  ECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            ECDP+VR+G+E+TARHMV+PYMPMLVPPINWTGYD+GAYLFLPSYVMR
Sbjct: 414  ECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMR 461


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  493 bits (1268), Expect = e-136
 Identities = 247/355 (69%), Positives = 289/355 (81%), Gaps = 2/355 (0%)
 Frame = -3

Query: 1061 KGYASVAEAV--SSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGK 888
            K YASVAEAV  SSTD EEDVS VDE+  LL E+ K++KK F F+++KQ  L  GMG  K
Sbjct: 122  KSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRK 181

Query: 887  YQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKE 708
            YQ L+RRQV++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+E
Sbjct: 182  YQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEE 241

Query: 707  QELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIE 528
            QELC  GK++ AYA YF QLPADMMAVITMHKLMGLLMTGG+HG ARVVQAA  IG+AIE
Sbjct: 242  QELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIE 301

Query: 527  HEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQ 348
             E RIH FLE+            + + +   ++QE+LRKKVTNLMKKQKL+ V QIV+ Q
Sbjct: 302  QEVRIHNFLEK-TKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQ 360

Query: 347  DEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKM 168
            D+ KPWGQDA+AKVGSRLI+LL+QTAYIQPP +Q A   PDIRPAF+HS++TV K++   
Sbjct: 361  DDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSA 420

Query: 167  GKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
             +RYG+I+CD LV +GLERTARHMVIPYMPMLVPP+ WTGYDKG +L+LPSYVMR
Sbjct: 421  SRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 475


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  493 bits (1268), Expect = e-136
 Identities = 264/456 (57%), Positives = 322/456 (70%), Gaps = 23/456 (5%)
 Frame = -3

Query: 1301 MWRNVAKQA---------VCSRN----LMRVSRNSVIQEKSRLFDLN----KRLIFGFYD 1173
            MWRN+ KQ            S+N     +   ++SV ++ ++   L       ++ GF +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 1172 TSSRGNGEQ----SSLEEDTRRSSFRCLKIPSNISVFSDHPKGYASVAEAV--SSTDTEE 1011
                  G++      L+     + F C K              YASVAEAV  SSTD EE
Sbjct: 95   LGEYLPGDEFLSRPLLKNQVNSNDFCCRK-------------SYASVAEAVAVSSTDAEE 141

Query: 1010 DVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQA 831
            DVS VDE++ LL E+ K++KK F F+++KQ  L  GMG  KYQ L+RRQV++ETEAWEQA
Sbjct: 142  DVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 201

Query: 830  AKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQ 651
            AKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+EQELC  GK++ AYA Y  Q
Sbjct: 202  AKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQ 261

Query: 650  LPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHEARIHRFLERXXXXXXXX 471
            LPADMMAVITMHKLMGLLMTGG+HG ARVVQAA  IG+AIE E RIH FLE+        
Sbjct: 262  LPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEK-TKKQKAE 320

Query: 470  XKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLI 291
                + + +   ++QE+LRKKVTNLMKKQKL+ V QIV+ QD+ KPWGQDA+AKVGSRLI
Sbjct: 321  KDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLI 380

Query: 290  ELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLER 111
            ELL+QTAYIQPP +Q A   PDIRPAF+HS++TV K++    +RYG+I+CD LV +GLER
Sbjct: 381  ELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLER 440

Query: 110  TARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            TARHMVIPYMPMLVPP+ WTGYDKG +L+LPSYVMR
Sbjct: 441  TARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 476


>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  492 bits (1266), Expect = e-136
 Identities = 274/494 (55%), Positives = 337/494 (68%), Gaps = 27/494 (5%)
 Frame = -3

Query: 1403 LVSANLSCKLDCSISISSVYNISRPIPLRQERRE----MWRNVAKQAVCSR--------- 1263
            L+S+NL  K D  + + +      P  L Q   +    MWRN+AK A+  R         
Sbjct: 8    LISSNLLDKFDHFVPLDN----RNPSILYQNPPKISIVMWRNIAKHAISRRTHSFQCFAR 63

Query: 1262 --NLMRVSRNSVIQEKSRLFDLNKRLIFG-------FYDTSSRGNGEQSSLEEDTRRSSF 1110
              + +  S++S+  EKS+     + L FG       F D   R  GE  +  E   + SF
Sbjct: 64   TYSFLGTSQDSIFHEKSKF----RGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGKQSF 119

Query: 1109 RCLKIPSNISVFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQ 930
               +  + I      P+GY SVAEAVSSTD EEDVS V+EIK LL+E+ K+ ++    ++
Sbjct: 120  GSPR--NEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKEQRRETGNRR 177

Query: 929  QKQPKLVGGMGQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 750
            ++   +  GMG+ KY+ LRRRQV++ETEAWEQAAKEY+ELL DMCE KLAPNLPY+KSLF
Sbjct: 178  RRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYIKSLF 237

Query: 749  LGWFEPLRDCIAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCA 570
            LGWFEPLRD I KEQEL +LGK R  YA Y DQLPADM AVITMHKLMGLLMTGGEHGCA
Sbjct: 238  LGWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQLPADMTAVITMHKLMGLLMTGGEHGCA 297

Query: 569  RVVQAACQIGEAIEHEARIHRFLERXXXXXXXXXKADRGE-PDAAAKQQERLRKKVTNLM 393
            RVVQAAC IG+AIE E RIH+FLE+           D G+ P+A  K+QE+LRKKVT+L+
Sbjct: 298  RVVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKNEDEGDKPNAEIKEQEKLRKKVTDLI 357

Query: 392  KKQKLQQVRQIVKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPA 213
            KKQKL  VRQIVK QD+ KPWGQDA+AKVGS LIELLMQTAYIQPP DQ AD  PD+RPA
Sbjct: 358  KKQKLPAVRQIVKGQDDTKPWGQDAKAKVGSHLIELLMQTAYIQPPADQLADCPPDVRPA 417

Query: 212  FIHSLKTVTKDSLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVP----PINWTGY 45
            F+HSL+TV K++ K G+RYGVIEC+PLVR+GLERT+      +   L       + WTGY
Sbjct: 418  FVHSLRTVVKENKKTGRRYGVIECNPLVRKGLERTSMDPCKAHGDSLYANVGVKVKWTGY 477

Query: 44   DKGAYLFLPSYVMR 3
            D+GAYLF+PSY+MR
Sbjct: 478  DRGAYLFIPSYIMR 491


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  490 bits (1261), Expect = e-136
 Identities = 246/355 (69%), Positives = 288/355 (81%), Gaps = 2/355 (0%)
 Frame = -3

Query: 1061 KGYASVAEAV--SSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGK 888
            K YASVAEAV  SSTD EEDVS VDE+  LL E+ K++KK F F+++KQ  L  GMG  K
Sbjct: 122  KSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRK 181

Query: 887  YQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKE 708
            YQ L+RRQV++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+E
Sbjct: 182  YQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEE 241

Query: 707  QELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIE 528
            QELC  GK++ AYA YF QLPADMMAVITMHKLMGLLMTGG+HG ARVVQAA  IG+AIE
Sbjct: 242  QELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIE 301

Query: 527  HEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQ 348
             E RIH FLE+            + + +   ++QE+LRKKVTNLMKKQKL+ V QIV+ Q
Sbjct: 302  QEVRIHNFLEK-TKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQ 360

Query: 347  DEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKM 168
            D+ KPWGQDA+AKVGSRLI+LL+QTAYIQPP +Q A   PDI PAF+HS++TV K++   
Sbjct: 361  DDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSA 420

Query: 167  GKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
             +RYG+I+CD LV +GLERTARHMVIPYMPMLVPP+ WTGYDKG +L+LPSYVMR
Sbjct: 421  SRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 475


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  485 bits (1249), Expect = e-134
 Identities = 260/419 (62%), Positives = 310/419 (73%), Gaps = 3/419 (0%)
 Frame = -3

Query: 1250 VSRNSVIQEKSRLFDLNKRLIFGFYDTSSRGNG---EQSSLEEDTRRSSFRCLKIPSNIS 1080
            +S+NS+    SR      R + G  + SS+       Q+SL    +     C K  S   
Sbjct: 53   LSQNSIFSRISR----KVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSL 108

Query: 1079 VFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGM 900
             F    + Y S AEA++ST  E+    +DEI+ L+EE+ K+++      Q KQPK +GGM
Sbjct: 109  GFL---RSYGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGM 161

Query: 899  GQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDC 720
            G GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD 
Sbjct: 162  GVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 221

Query: 719  IAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIG 540
            IA EQ+LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IG
Sbjct: 222  IAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIG 281

Query: 539  EAIEHEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQI 360
            EAIEHEARIHRFLE+           +   P    K++ERLRKKV  LMKKQKLQQVR+I
Sbjct: 282  EAIEHEARIHRFLEKTKKSNALSGDLE-DTPGDIMKERERLRKKVKILMKKQKLQQVRKI 340

Query: 359  VKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKD 180
            VK+QD+ KPWGQD   KVG RLI++LM+TAYIQPP DQ  D  PDIRPAF+H+LKTV  +
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--E 398

Query: 179  SLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            ++K  +RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAYLFLPSY+MR
Sbjct: 399  TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMR 457


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  484 bits (1246), Expect = e-134
 Identities = 259/419 (61%), Positives = 310/419 (73%), Gaps = 3/419 (0%)
 Frame = -3

Query: 1250 VSRNSVIQEKSRLFDLNKRLIFGFYDTSSRGNG---EQSSLEEDTRRSSFRCLKIPSNIS 1080
            +S+NS+    SR      R + G  + SS+       Q+SL    +     C K  S   
Sbjct: 53   LSQNSIFSRISR----KVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSL 108

Query: 1079 VFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGM 900
             F    + Y S AEA++ST  E+    +DEI+ L+EE+ K+++      Q KQPK +GGM
Sbjct: 109  GFL---RSYGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGM 161

Query: 899  GQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDC 720
            G GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD 
Sbjct: 162  GVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 221

Query: 719  IAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIG 540
            IA EQ+LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IG
Sbjct: 222  IAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIG 281

Query: 539  EAIEHEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQI 360
            EAIEHEARIHRFLE+           +   P    K++ER+RKKV  LMKKQKLQQVR+I
Sbjct: 282  EAIEHEARIHRFLEKTKKSNALSGDLE-DTPGDIMKERERVRKKVKILMKKQKLQQVRKI 340

Query: 359  VKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKD 180
            VK+QD+ KPWGQD   KVG RLI++LM+TAYIQPP DQ  D  PDIRPAF+H+LKTV  +
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--E 398

Query: 179  SLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            ++K  +RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAYLFLPSY+MR
Sbjct: 399  TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMR 457


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  483 bits (1242), Expect = e-133
 Identities = 242/353 (68%), Positives = 284/353 (80%)
 Frame = -3

Query: 1061 KGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQ 882
            + Y S AEA+ ST  E+    +DEI+ L+EE+ K+++      Q KQPK +GGMG GKY 
Sbjct: 112  RSYGSAAEAIVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYN 167

Query: 881  LLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQE 702
             LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD IA EQ+
Sbjct: 168  FLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 701  LCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHE 522
            LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHE 287

Query: 521  ARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDE 342
            ARIHRFLE+           +   P    K++ERLRKKV  LMKKQKL+QVR+IVK+QD+
Sbjct: 288  ARIHRFLEKTKKSNALSGDLEE-TPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 346

Query: 341  VKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGK 162
             KPWGQD   KVG RLI++LM+TAYIQPP DQ  DG PDIRPAF+H+LKTV  +++K  +
Sbjct: 347  EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404

Query: 161  RYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKG YLFLPSY+MR
Sbjct: 405  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMR 457


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  483 bits (1242), Expect = e-133
 Identities = 242/353 (68%), Positives = 284/353 (80%)
 Frame = -3

Query: 1061 KGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQ 882
            + Y S AEA+ ST  E+    +DEI+ L+EE+ K+++      Q KQPK +GGMG GKY 
Sbjct: 112  RSYGSAAEAIVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYN 167

Query: 881  LLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQE 702
             LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD IA EQ+
Sbjct: 168  FLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 701  LCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHE 522
            LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHE 287

Query: 521  ARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDE 342
            ARIHRFLE+           +   P    K++ERLRKKV  LMKKQKL+QVR+IVK+QD+
Sbjct: 288  ARIHRFLEKTKKSNALSGDLEE-TPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 346

Query: 341  VKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGK 162
             KPWGQD   KVG RLI++LM+TAYIQPP DQ  DG PDIRPAF+H+LKTV  +++K  +
Sbjct: 347  EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404

Query: 161  RYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKG YLFLPSY+MR
Sbjct: 405  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMR 457


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score =  480 bits (1235), Expect = e-133
 Identities = 242/353 (68%), Positives = 285/353 (80%)
 Frame = -3

Query: 1061 KGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQ 882
            + Y S AEA++ST  E+    +DEI+ L+EE+ K+++      Q KQPK VGGMG GKY 
Sbjct: 104  RSYGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN 159

Query: 881  LLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQE 702
            LLRRRQ+++ETEAWE AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPL+D IA EQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQK 219

Query: 701  LCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHE 522
            LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IGEAIEHE
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 521  ARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDE 342
            ARIHRFLE+           +        K++ERLRKKV  LMKKQKLQQVR+IVK+QD+
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDD 337

Query: 341  VKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGK 162
             KPWGQD   KVG RLI++L++TAYIQPP DQ  D  PDIRPAF+H+LKTV  D++K  +
Sbjct: 338  EKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTV--DTVKGSR 395

Query: 161  RYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY+MR
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMR 448


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  478 bits (1230), Expect = e-132
 Identities = 241/353 (68%), Positives = 285/353 (80%)
 Frame = -3

Query: 1061 KGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGMGQGKYQ 882
            + Y S AEA++ST  E+    +DEI+ L+EE+ K+++      Q KQPK VGGMG GKY 
Sbjct: 104  RSYGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN 159

Query: 881  LLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQE 702
            LLRRRQ+++ETEAWE AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA EQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQK 219

Query: 701  LCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIGEAIEHE 522
            LC  GKNRGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG  G ARVVQAA  IGEAIEHE
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 521  ARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDE 342
            ARIHRFLE+           +        K++ERLRKKV  LMKKQKLQQVR+IVK+QD+
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDD 337

Query: 341  VKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKDSLKMGK 162
             KPWGQD   KVG +LI++L++TAYIQPP DQ  D  PDIRPAF+H+LKTV  +++K  +
Sbjct: 338  EKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSR 395

Query: 161  RYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY+MR
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMR 448


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score =  477 bits (1228), Expect = e-132
 Identities = 257/419 (61%), Positives = 307/419 (73%), Gaps = 3/419 (0%)
 Frame = -3

Query: 1250 VSRNSVIQEKSRLFDLNKRLIFGFYDTSSRGNG---EQSSLEEDTRRSSFRCLKIPSNIS 1080
            +S+NS+    SR      R + G  + SS+       Q+SL    +     C K  S   
Sbjct: 53   LSQNSIFSRISR----KVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSL 108

Query: 1079 VFSDHPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEICKDDKKAFEFKQQKQPKLVGGM 900
             F    + Y S AEA++ST  E+     DEI+ L+EE+ K+++      Q KQPK +GGM
Sbjct: 109  GFL---RSYGSAAEAIASTSEED----TDEIQELIEEMNKENEALKTNLQPKQPKTIGGM 161

Query: 899  GQGKYQLLRRRQVRMETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRDC 720
            G GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLRD 
Sbjct: 162  GVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 221

Query: 719  IAKEQELCQLGKNRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGCARVVQAACQIG 540
            IA EQ+LC  GKNRGA AP+FDQLPA+MMAVITMHKLMG LMTGG  G ARVVQAA  IG
Sbjct: 222  IAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIG 281

Query: 539  EAIEHEARIHRFLERXXXXXXXXXKADRGEPDAAAKQQERLRKKVTNLMKKQKLQQVRQI 360
            EAIEHEARIHRFLE+           +   P    K++ER+RKKV  LMKKQKLQQVR+I
Sbjct: 282  EAIEHEARIHRFLEKTKKSNALSGDLE-DTPGDIMKERERVRKKVKILMKKQKLQQVRKI 340

Query: 359  VKEQDEVKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQSADGTPDIRPAFIHSLKTVTKD 180
            VK+QD+ KPWGQD   KVG RLI++LM+TAYIQPP DQ  D  PDIRPAF+H+LKTV  +
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--E 398

Query: 179  SLKMGKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 3
            ++K  +RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAYLFLPSY+MR
Sbjct: 399  TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMR 457