BLASTX nr result
ID: Sinomenium21_contig00032190
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00032190
(359 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 103 2e-20
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 102 7e-20
ref|XP_001766425.1| predicted protein [Physcomitrella patens] gi... 97 2e-18
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 95 1e-17
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 95 1e-17
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 93 3e-17
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 93 3e-17
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar... 92 6e-17
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu... 92 6e-17
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 92 6e-17
dbj|BAD44440.1| DNA-directed RNA polymerase II second largest ch... 92 6e-17
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab... 92 6e-17
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid... 92 6e-17
emb|CAA79528.1| RNA polymerase II second largest subunit [Arabid... 92 6e-17
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not... 92 8e-17
gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhodode... 92 1e-16
ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 91 2e-16
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 91 2e-16
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 91 2e-16
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su... 91 2e-16
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 103 bits (258), Expect = 2e-20
Identities = 52/60 (86%), Positives = 53/60 (88%), Gaps = 4/60 (6%)
Frame = -2
Query: 169 MYGGDEYDPTA----NDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
MYG DEYDPT D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 60
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1191
Score = 102 bits (253), Expect = 7e-20
Identities = 49/58 (84%), Positives = 52/58 (89%)
Frame = -2
Query: 175 LDMYGGDEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+D +EYDPT DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MDFEEEEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
>ref|XP_001766425.1| predicted protein [Physcomitrella patens]
gi|162682334|gb|EDQ68753.1| predicted protein
[Physcomitrella patens]
Length = 1185
Score = 97.4 bits (241), Expect = 2e-18
Identities = 51/57 (89%), Positives = 52/57 (91%), Gaps = 1/57 (1%)
Frame = -2
Query: 169 MYGGDE-YDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
MYGGDE YD DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MYGGDEEYD----DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 53
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Solanum tuberosum]
Length = 1191
Score = 94.7 bits (234), Expect = 1e-17
Identities = 47/54 (87%), Positives = 50/54 (92%), Gaps = 2/54 (3%)
Frame = -2
Query: 157 DEYDPTAN--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
DEY+P N D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 94.7 bits (234), Expect = 1e-17
Identities = 47/54 (87%), Positives = 50/54 (92%), Gaps = 2/54 (3%)
Frame = -2
Query: 157 DEYDPTAN--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
DEY+P N D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 93.2 bits (230), Expect = 3e-17
Identities = 48/58 (82%), Positives = 49/58 (84%), Gaps = 2/58 (3%)
Frame = -2
Query: 169 MYGGDEYDPTANDE--DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
M EYDP D+ DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 93.2 bits (230), Expect = 3e-17
Identities = 47/56 (83%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDPTA----NDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVDDDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|NRPB2_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 2; AltName:
Full=DNA-directed RNA polymerase II 135 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit
RPB2; Short=RNA polymerase II subunit 2; Short=RNA
polymerase II subunit B2; AltName: Full=Protein EMBRYO
DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDP----TANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
gi|550340301|gb|EEE85647.2| hypothetical protein
POPTR_0004s04320g [Populus trichocarpa]
Length = 1215
Score = 92.4 bits (228), Expect = 6e-17
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = -2
Query: 157 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
++ +P D DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 14 EDMEPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 65
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus] gi|449479313|ref|XP_004155566.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB2-like [Cucumis sativus]
Length = 1199
Score = 92.4 bits (228), Expect = 6e-17
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = -2
Query: 172 DMYGGDEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+M D+ D D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 10 NMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 66
>dbj|BAD44440.1| DNA-directed RNA polymerase II second largest chain [Arabidopsis
thaliana]
Length = 124
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDP----TANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
Length = 1188
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDP----TANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDP----TANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 92.4 bits (228), Expect = 6e-17
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDP----TANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+P +D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 92.0 bits (227), Expect = 8e-17
Identities = 47/54 (87%), Positives = 48/54 (88%), Gaps = 3/54 (5%)
Frame = -2
Query: 154 EYDPTANDED---EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
EYD ND+D EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 6 EYDQQYNDDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1207
Score = 91.7 bits (226), Expect = 1e-16
Identities = 48/76 (63%), Positives = 53/76 (69%), Gaps = 20/76 (26%)
Frame = -2
Query: 169 MYGGDEYDPTA--------------------NDEDEEITQEDAWAVISAYFEEKGLVRQQ 50
MYG DEYDP+ +D++EEI+QEDAW VISAYFEEKGLVRQQ
Sbjct: 1 MYGEDEYDPSLIDHSQIVNVGDGGDGDGDGDDDDEEEISQEDAWTVISAYFEEKGLVRQQ 60
Query: 49 LDSFDEFIQNTMQEIV 2
LDSFDEFIQNTMQEIV
Sbjct: 61 LDSFDEFIQNTMQEIV 76
>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
gi|557114913|gb|ESQ55196.1| hypothetical protein
EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 90.9 bits (224), Expect = 2e-16
Identities = 46/56 (82%), Positives = 49/56 (87%), Gaps = 4/56 (7%)
Frame = -2
Query: 157 DEYDPTAN----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+EY+ N D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 4 NEYEQEPNYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = -2
Query: 157 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+++ DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 10 EQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
Length = 1195
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = -2
Query: 157 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 2
+++ DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 10 EQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1193
Score = 90.5 bits (223), Expect = 2e-16
Identities = 47/61 (77%), Positives = 50/61 (81%), Gaps = 3/61 (4%)
Frame = -2
Query: 175 LDMYGGDEYDPTANDED---EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 5
+D+ EYD +ED EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLEEEQEYDEQMMEEDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 4 V 2
V
Sbjct: 61 V 61