BLASTX nr result
ID: Sinomenium21_contig00031604
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00031604
(285 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera] 129 5e-28
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera] 126 3e-27
emb|CAN62447.1| hypothetical protein VITISV_024007 [Vitis vinifera] 126 4e-27
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 125 8e-27
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group] 124 1e-26
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 124 2e-26
gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subc... 123 2e-26
emb|CAN83352.1| hypothetical protein VITISV_022160 [Vitis vinifera] 123 3e-26
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera] 123 3e-26
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 122 4e-26
gb|AAB82754.1| retrofit [Oryza longistaminata] 122 5e-26
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 122 5e-26
emb|CAN60617.1| hypothetical protein VITISV_003256 [Vitis vinifera] 122 7e-26
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 122 7e-26
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 121 9e-26
ref|WP_003830793.1| reverse transcriptase family protein, partia... 121 1e-25
emb|CAN69370.1| hypothetical protein VITISV_010057 [Vitis vinifera] 121 1e-25
gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsi... 121 1e-25
emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera] 120 2e-25
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 119 3e-25
>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
Length = 1442
Score = 129 bits (323), Expect = 5e-28
Identities = 62/92 (67%), Positives = 75/92 (81%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q +YI+DLL +M AK VSTPL+ T +LKL D T P D+T +R+V+GSLQYLSLTR
Sbjct: 1109 LSQHQYIRDLLSTTNMLGAKDVSTPLSTTASLKLFDGTAPVDSTDFRRVIGSLQYLSLTR 1168
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
PD+SFAVNKLSQFMH P+T HW+A KRLLRYL
Sbjct: 1169 PDISFAVNKLSQFMHKPTTAHWTATKRLLRYL 1200
>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
Length = 478
Score = 126 bits (317), Expect = 3e-27
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q+KYI DLL R HM++AKP TPLA + L L TP +D T YR V+GSLQYLSLTR
Sbjct: 201 LSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSDPTEYRTVVGSLQYLSLTR 260
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
PD+++ VNKLSQFMH P++ HW+AVKRLLRYL G
Sbjct: 261 PDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCG 294
>emb|CAN62447.1| hypothetical protein VITISV_024007 [Vitis vinifera]
Length = 1144
Score = 126 bits (316), Expect = 4e-27
Identities = 58/92 (63%), Positives = 75/92 (81%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q KY++D+L+ HM+ AK VSTPL+ T++L L+D T ++T YR+V+GSLQYLSLTR
Sbjct: 924 LSQHKYVRDILENTHMAGAKDVSTPLSTTQSLHLVDGTNAVNSTEYRRVIGSLQYLSLTR 983
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
PD+ FAVNKLSQFMH P+ HW+A KRLLRYL
Sbjct: 984 PDIXFAVNKLSQFMHKPTVTHWTATKRLLRYL 1015
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 125 bits (313), Expect = 8e-27
Identities = 58/94 (61%), Positives = 80/94 (85%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY DLL+RV+MS+ KPVSTPL+V+E L L + +P P DAT YR ++G+LQYL+L
Sbjct: 1171 LTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTL 1230
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW+AVKR+LRYL
Sbjct: 1231 TRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYL 1264
>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
Length = 950
Score = 124 bits (311), Expect = 1e-26
Identities = 57/94 (60%), Positives = 79/94 (84%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY DLL+RV+MS+ KPVSTPL+V+E L L + +P P DAT YR ++G+LQYL+L
Sbjct: 248 LTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTL 307
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW+ VKR+LRYL
Sbjct: 308 TRPDIAYSVNKVCQFLHAPTTRHWTGVKRILRYL 341
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 124 bits (310), Expect = 2e-26
Identities = 57/94 (60%), Positives = 79/94 (84%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY D+L+RV+MS+ KPVSTPL+V+E L L + +P P DAT YR ++G+LQYL+L
Sbjct: 1183 LTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTL 1242
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW AVKR+LRYL
Sbjct: 1243 TRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYL 1276
>gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 825
Score = 123 bits (309), Expect = 2e-26
Identities = 57/94 (60%), Positives = 79/94 (84%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY DLL+RV+MS+ KPVSTPL+V+E L L + +P P DAT YR ++G+LQYL+L
Sbjct: 661 LTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTL 720
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW+ VKR+LRYL
Sbjct: 721 TRPDIAYSVNKVCQFLHAPTTDHWTVVKRILRYL 754
>emb|CAN83352.1| hypothetical protein VITISV_022160 [Vitis vinifera]
Length = 1087
Score = 123 bits (308), Expect = 3e-26
Identities = 60/92 (65%), Positives = 72/92 (78%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q +YI+DLL +M AK VSTPL+ LKL D P D+T +R+V+GSLQYLSLTR
Sbjct: 853 LSQHQYIRDLLSTTNMLGAKDVSTPLSTIAXLKLFDGIVPVDSTDFRRVIGSLQYLSLTR 912
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
PD+SFAVNKLSQFMH P+T HW+A KRLLRYL
Sbjct: 913 PDISFAVNKLSQFMHKPTTAHWTATKRLLRYL 944
>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
Length = 1112
Score = 123 bits (308), Expect = 3e-26
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q KYI DLL R HM++AKP TPLA + L L TP ++ T YR ++GSLQYLSLTR
Sbjct: 861 LSQHKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSNPTEYRTMVGSLQYLSLTR 920
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
PD+++ VNKLSQFMH P++ HW+AVKRLLRYL G
Sbjct: 921 PDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCG 954
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 122 bits (307), Expect = 4e-26
Identities = 58/94 (61%), Positives = 76/94 (80%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ KY+ DLL+RV+M D KPVSTPL+ +E L + + P P DAT YR V+G+LQYL+L
Sbjct: 982 LTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTL 1041
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++F VNK+ QF+H+P+T HW+AVKR+LRYL
Sbjct: 1042 TRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYL 1075
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 122 bits (306), Expect = 5e-26
Identities = 57/94 (60%), Positives = 78/94 (82%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY DLL+RV+MS+ KPVSTPL+V+E L L + +P P DA YR ++G+LQYL+L
Sbjct: 1180 LTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTL 1239
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW AVKR+LRYL
Sbjct: 1240 TRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYL 1273
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 122 bits (306), Expect = 5e-26
Identities = 60/94 (63%), Positives = 72/94 (76%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L Q+KYI DLL++ +M D KPVSTP++ T L LL T DAT YR VLGSLQYL+ TR
Sbjct: 1163 LMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTALDDATEYRTVLGSLQYLAFTR 1222
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
PD++FAVN+LSQFMH P+ HW A KR+LRYLAG
Sbjct: 1223 PDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAG 1256
>emb|CAN60617.1| hypothetical protein VITISV_003256 [Vitis vinifera]
Length = 474
Score = 122 bits (305), Expect = 7e-26
Identities = 58/91 (63%), Positives = 75/91 (82%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q KYI++LL +MS AK VSTPL++T++LKLLD T D T +R+++GSLQYLSL R
Sbjct: 228 LSQHKYIRELLSTTNMSGAKVVSTPLSITQSLKLLDGTTNVDNTEFRRIIGSLQYLSLKR 287
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRY 275
PD+SFAVNKLSQFMH P+T+H++ KRLLRY
Sbjct: 288 PDISFAVNKLSQFMHKPTTIHFTTTKRLLRY 318
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 122 bits (305), Expect = 7e-26
Identities = 56/94 (59%), Positives = 78/94 (82%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLL--DETPPADATLYRQVLGSLQYLSL 176
L+Q+KY++DLL+R++M KPVSTPL+ TE L + D P DAT YR ++G+LQYL+L
Sbjct: 1067 LSQEKYVKDLLKRINMDKCKPVSTPLSPTEKLSIHQGDVLGPNDATNYRSIVGALQYLTL 1126
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD+SF+VNK+ Q++HSP+T+HW+AVKR+LRYL
Sbjct: 1127 TRPDISFSVNKVCQYLHSPTTVHWAAVKRILRYL 1160
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 121 bits (304), Expect = 9e-26
Identities = 56/94 (59%), Positives = 78/94 (82%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ+KY D+L+RV+MS+ PVSTPL+V+E L L + +P P DAT YR ++G+LQYL+L
Sbjct: 1183 LTQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTL 1242
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++++VNK+ QF+H+P+T HW AVKR+LRYL
Sbjct: 1243 TRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYL 1276
>ref|WP_003830793.1| reverse transcriptase family protein, partial [Bifidobacterium
breve] gi|291380553|gb|EFE88071.1| reverse transcriptase
(RNA-dependent DNA polymerase), partial [Bifidobacterium
breve DSM 20213 = JCM 1192]
Length = 153
Score = 121 bits (303), Expect = 1e-25
Identities = 56/96 (58%), Positives = 79/96 (82%), Gaps = 2/96 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLL--DETPPADATLYRQVLGSLQYLSL 176
L+Q+KY +D+++R +MS++K VSTPL+ TE L + D+ P D+T YR V+G+LQYL+L
Sbjct: 51 LSQEKYARDIIKRTNMSNSKSVSTPLSSTEKLSIEAGDQLSPQDSTNYRSVVGALQYLTL 110
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
TRPD+SFAVNK+ QF+HSP+T HWSA+KR+LRY+ G
Sbjct: 111 TRPDISFAVNKMCQFLHSPTTSHWSALKRILRYVQG 146
>emb|CAN69370.1| hypothetical protein VITISV_010057 [Vitis vinifera]
Length = 591
Score = 121 bits (303), Expect = 1e-25
Identities = 59/94 (62%), Positives = 72/94 (76%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L Q+KYI DLL R HM++AK TPLA + L L TP ++ T YR V+GSLQYLSLTR
Sbjct: 314 LNQRKYIADLLNRTHMTEAKSAPTPLATSPILTLQSGTPLSNPTEYRTVVGSLQYLSLTR 373
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
PD+++ VNKLSQFMH P++ HW+AVKRLLRYL G
Sbjct: 374 PDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCG 407
>gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 387
Score = 121 bits (303), Expect = 1e-25
Identities = 58/94 (61%), Positives = 69/94 (73%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L Q+KYI DLL + HM DAKP+STP+A T L L T DA YR ++GSLQYLS TR
Sbjct: 121 LMQRKYITDLLAKTHMLDAKPISTPMATTPKLSLHSGTILDDAKEYRMIIGSLQYLSFTR 180
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYLAG 284
PD++F VN+LSQFMH P+ HW A KR+LRYLAG
Sbjct: 181 PDIAFVVNRLSQFMHKPTDEHWQAAKRVLRYLAG 214
>emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]
Length = 1044
Score = 120 bits (301), Expect = 2e-25
Identities = 57/92 (61%), Positives = 72/92 (78%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETPPADATLYRQVLGSLQYLSLTR 182
L+Q KY +D+L+ HM+ AK VSTPL+ T++L L+D + T YR+V+G+LQYLSLTR
Sbjct: 765 LSQHKYARDILENTHMAGAKDVSTPLSTTQSLHLVDGMNAINNTEYRRVIGNLQYLSLTR 824
Query: 183 PDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
PD+SFAVNKLSQFMH P HW+A KRLLRYL
Sbjct: 825 PDISFAVNKLSQFMHKPIVTHWTATKRLLRYL 856
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 119 bits (299), Expect = 3e-25
Identities = 54/94 (57%), Positives = 76/94 (80%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 LTQQKYIQDLLQRVHMSDAKPVSTPLAVTENLKLLDETP--PADATLYRQVLGSLQYLSL 176
LTQ KY DLL++V MSD KP+STPL+ +E L + + +P D T YR ++G+LQYL+L
Sbjct: 1048 LTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTL 1107
Query: 177 TRPDVSFAVNKLSQFMHSPSTLHWSAVKRLLRYL 278
TRPD++F+VNK+ QF+H+P+TLHW+AVKR+LRY+
Sbjct: 1108 TRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYI 1141