BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00029568
         (390 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006654370.1| PREDICTED: DNA-directed RNA polymerase II su...    56   6e-06
ref|XP_004240381.1| PREDICTED: DNA-directed RNA polymerase II su...    56   6e-06
ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...    56   6e-06
ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polype...    56   6e-06
ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group] g...    56   6e-06
ref|XP_006400998.1| hypothetical protein EUTSA_v10014822mg [Eutr...    55   8e-06
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...    55   8e-06

>ref|XP_006654370.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Oryza
           brachyantha]
          Length = 177

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGAS 309
           RVDATEIFCIGTIKDDFLGVI+DPGA+
Sbjct: 150 RVDATEIFCIGTIKDDFLGVISDPGAA 176


>ref|XP_004240381.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Solanum lycopersicum] gi|565385656|ref|XP_006358706.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Solanum tuberosum]
          Length = 177

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGASA 306
           RVDATEIFCIGTIKDDFLGVI+DPG +A
Sbjct: 150 RVDATEIFCIGTIKDDFLGVISDPGTNA 177


>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Brachypodium distachyon]
          Length = 177

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGAS 309
           RVDATEIFCIGTIKDDFLGVI+DPGA+
Sbjct: 150 RVDATEIFCIGTIKDDFLGVISDPGAA 176


>ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
           gi|242056199|ref|XP_002457245.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|242090461|ref|XP_002441063.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|514750630|ref|XP_004962151.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB7-like [Setaria italica]
           gi|194708012|gb|ACF88090.1| unknown [Zea mays]
           gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase
           II 19 kDa polypeptide [Zea mays]
           gi|241929220|gb|EES02365.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|241946348|gb|EES19493.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase
           II polypeptide [Zea mays]
          Length = 177

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGAS 309
           RVDATEIFCIGTIKDDFLGVI+DPGA+
Sbjct: 150 RVDATEIFCIGTIKDDFLGVISDPGAA 176


>ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
           gi|50878367|gb|AAT85142.1| putative RNA polymerase II
           subunit 5 [Oryza sativa Japonica Group]
           gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa
           Japonica Group] gi|125552268|gb|EAY97977.1| hypothetical
           protein OsI_19896 [Oryza sativa Indica Group]
           gi|215704281|dbj|BAG93121.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218196761|gb|EEC79188.1| hypothetical protein
           OsI_19893 [Oryza sativa Indica Group]
           gi|222631528|gb|EEE63660.1| hypothetical protein
           OsJ_18478 [Oryza sativa Japonica Group]
          Length = 177

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGAS 309
           RVDATEIFCIGTIKDDFLGVI+DPGA+
Sbjct: 150 RVDATEIFCIGTIKDDFLGVISDPGAA 176


>ref|XP_006400998.1| hypothetical protein EUTSA_v10014822mg [Eutrema salsugineum]
           gi|557102088|gb|ESQ42451.1| hypothetical protein
           EUTSA_v10014822mg [Eutrema salsugineum]
          Length = 177

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGASA 306
           RVDATEIFC+GTIKDDFLGVINDP ++A
Sbjct: 150 RVDATEIFCVGTIKDDFLGVINDPASTA 177


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449518487|ref|XP_004166273.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 176

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = -2

Query: 389 RVDATEIFCIGTIKDDFLGVINDPGAS 309
           RVDATEIFCIGTIKDDFLGVINDP A+
Sbjct: 150 RVDATEIFCIGTIKDDFLGVINDPSAA 176