BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00027885
         (1378 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   291   5e-76
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   277   7e-72
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   277   9e-72
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   276   1e-71
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein...   271   4e-70
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   270   1e-69
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   269   2e-69
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   268   3e-69
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   268   3e-69
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   265   5e-68
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   263   1e-67
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   263   2e-67
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   257   7e-66
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   255   4e-65
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   253   1e-64
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   253   1e-64
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   252   3e-64
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               251   7e-64
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   241   5e-61
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   239   2e-60

>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  291 bits (745), Expect = 5e-76
 Identities = 178/363 (49%), Positives = 209/363 (57%), Gaps = 6/363 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRT  A+GRNRHS PPSRRQREG                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTN-AAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQLA 660
            +GSQ+PLKKRLDPT                                  LYKD+ DR +LA
Sbjct: 60   SGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLA 119

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAKQS-GKKAVSAKETXXXXXXXXXXXXXXXXX 837
             M+EL+REMILSDRA +++D+ L E +RAK   GK A S KET                 
Sbjct: 120  GMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADR 179

Query: 838  XXXKDDALNELRAKRMKQQDPEGYRKSRDAARGG-NYXXXXXXXXXXXXXXXXXXXXXXX 1014
               KDDALNELRAKR+KQQDPE +RK RDA+RG  N                        
Sbjct: 180  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSE 239

Query: 1015 XXXXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEV 1191
                         G+  + +SD+E+S PG D  T +DIK +TIRRSKLAKWL+EPFFEE+
Sbjct: 240  SESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEEL 299

Query: 1192 VVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFGK--SEAR 1365
            +VGCFVR+GIG+ R    IYRLC V NVDA++ D+QY LE K THKYLNVI+G   S AR
Sbjct: 300  IVGCFVRVGIGRSR-SGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAAR 358

Query: 1366 WQM 1374
            WQM
Sbjct: 359  WQM 361


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  277 bits (709), Expect = 7e-72
 Identities = 168/360 (46%), Positives = 202/360 (56%), Gaps = 3/360 (0%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRT  A G++RHS   SRR+R G                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTSSA-GKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +G+Q+PLKKRLDPT                                 LYKDE DR +LA+
Sbjct: 60   SGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXXX 843
            M+EL+RE+ILSDRAQ++DD+ L E+ R K         KET                   
Sbjct: 120  MSELQRELILSDRAQKKDDKSLKEKFRPK---------KETPPLPSSRVRSSARSADRAA 170

Query: 844  XKDDALNELRAKRMKQQDPEGYRKSRDAARGGN-YXXXXXXXXXXXXXXXXXXXXXXXXX 1020
             KDDALNELRAKR+KQQDPE +RK RDA+RG +                           
Sbjct: 171  AKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSD 230

Query: 1021 XXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVVG 1200
                       G D + +SD+E+S G   LT DDIK ITIRRSKLAKWL+EPFFEE++VG
Sbjct: 231  SRSHSEDDGSTGEDPMMDSDDERSEG---LTFDDIKEITIRRSKLAKWLMEPFFEELIVG 287

Query: 1201 CFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQM 1374
            CFVR+GIG+ +    IYRLC V NVDASD D++Y LE K+THKYLNV++G   S ARWQM
Sbjct: 288  CFVRVGIGRSK-SGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQM 346


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  277 bits (708), Expect = 9e-72
 Identities = 166/362 (45%), Positives = 207/362 (57%), Gaps = 5/362 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MA+LENLLLEAAGRT  A GRNRHS PPSRR+REG                  GY +RKP
Sbjct: 1    MAELENLLLEAAGRTRSA-GRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRLDPT                                 LYKD+ DR +LA+
Sbjct: 60   SGSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSD--LYKDDDDRRKLAE 117

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGK-KAVSAKETXXXXXXXXXXXXXXXXXX 840
            MTEL+REMIL DRA +++D+ L E++R K   K KA  +++                   
Sbjct: 118  MTELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRA 177

Query: 841  XXKDDALNELRAKRMKQQDPEGYRKSRDAARGGN-YXXXXXXXXXXXXXXXXXXXXXXXX 1017
              KDDALNELRAKR+KQQDPE + K RDA+RGG+                          
Sbjct: 178  AAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSDS 237

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVV 1194
                        G+  + +SD+E+  PG + LT DDIK +T+RRSKLAKWL+EPFFEE++
Sbjct: 238  ESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELI 297

Query: 1195 VGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARW 1368
            VGCFVR+GIG+ +    IYRLC V NVDAS+ D+QY L+ K THKYLNV++G   S ARW
Sbjct: 298  VGCFVRVGIGRSK-SGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARW 356

Query: 1369 QM 1374
            QM
Sbjct: 357  QM 358


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  276 bits (707), Expect = 1e-71
 Identities = 166/362 (45%), Positives = 207/362 (57%), Gaps = 5/362 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTG  SGRNR++ PPSRR+REG                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTG-TSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQLA 660
            +GSQ+PLKKRLDPT                                  LYK+E DR +LA
Sbjct: 60   SGSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLA 119

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAV-SAKETXXXXXXXXXXXXXXXXX 837
            QM+ELEREMILS+RA ++ D+ LTER+R+K+  ++   S KET                 
Sbjct: 120  QMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSAD 179

Query: 838  XXX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXX 1014
                KDDALNEL+A+R+KQQDPE +RK RDA+R G+                        
Sbjct: 180  RAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSE 239

Query: 1015 XXXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVV 1194
                         G+  + +SD++  PG    T DDI+ ITIRRSKLAKW +EP+FEE++
Sbjct: 240  SESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELI 299

Query: 1195 VGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARW 1368
            VGCFVR+GIG+ +    IYRLC V NVDA+D D+ Y LE K+T+KYLNVI+G   S ARW
Sbjct: 300  VGCFVRVGIGRSK-SGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARW 358

Query: 1369 QM 1374
            QM
Sbjct: 359  QM 360


>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 619

 Score =  271 bits (694), Expect = 4e-70
 Identities = 163/361 (45%), Positives = 201/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGR-NRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRK 480
            MADL++LLLEAAGRT  +SGR +RHS   S+R+R+                   GY SRK
Sbjct: 1    MADLDDLLLEAAGRT--SSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRK 58

Query: 481  PAGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLA 660
            P+GSQ+PLKKRLDP+                                 LYKDE DR +LA
Sbjct: 59   PSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDDRRKLA 118

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKAVSAKETXXXXXXXXXXXXXXXXX 837
            +M+EL+RE+ILSDRAQ++DD+ L E+ R K   GK   S K T                 
Sbjct: 119  EMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADR 178

Query: 838  XXXKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKR+KQQDPE +RK RD +RG                           
Sbjct: 179  AAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSD 238

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                          D+  +SD+E+  G   LT +DIK ITIRRS+LAKWL+EPFFEE++V
Sbjct: 239  SESRSHSDDEGSSADDAIDSDDER--GNQGLTFEDIKEITIRRSRLAKWLMEPFFEELIV 296

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIGK +    IYRLC V NVD+SD D+QY LE K+THKYLNV++G   S ARWQ
Sbjct: 297  GCFVRVGIGKTKSGRPIYRLCSVRNVDSSDPDRQYKLENKTTHKYLNVVWGNENSAARWQ 356

Query: 1372 M 1374
            M
Sbjct: 357  M 357


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  270 bits (690), Expect = 1e-69
 Identities = 157/360 (43%), Positives = 202/360 (56%), Gaps = 3/360 (0%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTG A GRNRHS PPSRR+ +G                   Y SRKP
Sbjct: 1    MADLENLLLEAAGRTGTA-GRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRLDPT                                 LYKDE DR +L++
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXXX 843
            MTEL+REMILSDRA ++DD+ L  ++ +K+   KA + ++                    
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS 179

Query: 844  XKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXXXX 1023
             K+DALNELRAKR+KQQDPE +R+ R+A+R                              
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSESES 239

Query: 1024 XXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVVG 1200
                      G+  + +SD++++  G +  +  DIK ITIRRSKLAKW +EPFFEE++VG
Sbjct: 240  RSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVG 299

Query: 1201 CFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQM 1374
            CFVR+GIG+ +    IYRLC V NVDAS+ D+QY LE K+T+KYLNV++G   S ARWQM
Sbjct: 300  CFVRVGIGRSK-TGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQM 358


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  269 bits (688), Expect = 2e-69
 Identities = 162/361 (44%), Positives = 200/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGR-NRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRK 480
            MADL++LLLEAAGRT  +SGR +RHS   S+R+R+                   GY SRK
Sbjct: 1    MADLDDLLLEAAGRT--SSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRK 58

Query: 481  PAGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLA 660
            P+GSQ+PLKKRLDP+                                 LYKDE DR +LA
Sbjct: 59   PSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLA 118

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKAVSAKETXXXXXXXXXXXXXXXXX 837
            +M+EL+RE+ILSDRAQ++DD+ L E+ R K   GK   S K T                 
Sbjct: 119  EMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADR 178

Query: 838  XXXKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKR+KQQDPE +RK RD +RG                           
Sbjct: 179  AAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSD 238

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                          D+  +SD+E+  G   LT +DIK ITIRRS+LAKWL+EPFFEE++V
Sbjct: 239  SESRSHSDDDGSSADDAIDSDDER--GNQGLTFEDIKEITIRRSRLAKWLMEPFFEELIV 296

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GC VR+GIGK +    IYRLC V NVD+SD D+QY LE K+THKYLNV++G   S ARWQ
Sbjct: 297  GCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSAARWQ 356

Query: 1372 M 1374
            M
Sbjct: 357  M 357


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  268 bits (686), Expect = 3e-69
 Identities = 165/364 (45%), Positives = 207/364 (56%), Gaps = 7/364 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTG   GRNRHS PPSRR+REG                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTG-TGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQLA 660
            +GSQ+PLKKRLDP                                   LYK+E DR +LA
Sbjct: 60   SGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLA 119

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKAVSAKETXXXXXXXXXXXXXXXXX 837
            QMTELERE+ILS+RA +R D++ TE++R+K ++ + + S KET                 
Sbjct: 120  QMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSAD 179

Query: 838  XXX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGN-YXXXXXXXXXXXXXXXXXXXXXX 1011
                KDDALNELRAKR+KQQDPE +RK RDA+RG +                        
Sbjct: 180  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQS 239

Query: 1012 XXXXXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEE 1188
                          G+  + +SD+++   G D  T DDIK ITIRRSKLAKW +EPFFEE
Sbjct: 240  DSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEE 299

Query: 1189 VVVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEA 1362
            ++VGC+VR+GIG+ +    IYRLC V NVDA++ ++ Y LE K+T+KYLNV++G   S A
Sbjct: 300  LIVGCYVRVGIGRSK-SGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAA 358

Query: 1363 RWQM 1374
            RWQM
Sbjct: 359  RWQM 362


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  268 bits (686), Expect = 3e-69
 Identities = 157/361 (43%), Positives = 202/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTGGA+GRNRHS PPSRR+R+G                   Y SRKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQLA 660
            +GSQ+PLKKRLDPT                                  LYKDE DR +L+
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXX 840
            +M+EL+REMILSDRA ++DD+ L  ++ +K+   KA+   +                   
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSRMRASARSADR 180

Query: 841  XXKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXXX 1020
              K+ ALNELRAKR+KQQDPE  R+ R+A+R                             
Sbjct: 181  SAKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSDSD 240

Query: 1021 XXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                       G+  + +SD++++  G +  +  DIK ITIRRSKLAKW +EPFFEE++V
Sbjct: 241  SRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIV 300

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ +    IYRLC V NVD+SD D+QY LE ++THKYLNV++G   S ARWQ
Sbjct: 301  GCFVRVGIGRSK-TGPIYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNESSAARWQ 359

Query: 1372 M 1374
            M
Sbjct: 360  M 360


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  265 bits (676), Expect = 5e-68
 Identities = 157/361 (43%), Positives = 201/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTG  SGRNRHS PPSRR+ +G                   Y SRKP
Sbjct: 1    MADLENLLLEAAGRTG-TSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQLA 660
            +GSQ+PLKKRLDP+                                  LYKDE DR +L+
Sbjct: 60   SGSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLS 119

Query: 661  QMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXX 840
            +MTEL+REMILSDRA ++DD+ L  ++ +K+   K    ++                   
Sbjct: 120  EMTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSRMRASARSADR 179

Query: 841  XXKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXXX 1020
              K+DALNELRAKR+KQQDPE +RK R+A+R                             
Sbjct: 180  SAKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPPKRKPFTSTSLSSSSHSESE 239

Query: 1021 XXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                       G+  +G+SD++++  G +  +  DIK ITIRRSKLAKW +EPFFEE++V
Sbjct: 240  SRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIV 299

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ +    IYRLC V NVDAS+ D+QY LE K+T+KYLNV++G   S ARWQ
Sbjct: 300  GCFVRVGIGRSK-TGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 358

Query: 1372 M 1374
            M
Sbjct: 359  M 359


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  263 bits (673), Expect = 1e-67
 Identities = 158/361 (43%), Positives = 203/361 (56%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRTG A GRNRHS P SRR+ +G                   Y SRKP
Sbjct: 1    MADLENLLLEAAGRTGTA-GRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKP 59

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRLDPT                                 LYKDE DR +L++
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKAVSAKETXXXXXXXXXXXXXXXXXX 840
            MTEL+REMILSDRA ++DD+ L  ++ +K + GK AV  K++                  
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADRS 179

Query: 841  XXKDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXXX 1020
              K+DALNELRAKR+KQQDPE +R+ R+A+R                             
Sbjct: 180  A-KNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSSHSESE 238

Query: 1021 XXXXXXXXXXXGNDELGESDEEKS-PGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                       G+  + +SD++++  G +  +  D+K ITIRRSKLAKW +EPFFEE++V
Sbjct: 239  SRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIV 298

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ +    IYRLC V NVDAS+ D+QY LE K+T+KYLNV++G   S ARWQ
Sbjct: 299  GCFVRVGIGRSK-TGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 357

Query: 1372 M 1374
            M
Sbjct: 358  M 358


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  263 bits (671), Expect = 2e-67
 Identities = 163/365 (44%), Positives = 205/365 (56%), Gaps = 8/365 (2%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQR-EGXXXXXXXXXXXXXXXXXPGYVSRK 480
            MADLENLLLEAAGRTG  SGRNR+S PPSRR++ EG                  GY SRK
Sbjct: 1    MADLENLLLEAAGRTG-KSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRK 59

Query: 481  PAGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQL 657
            P+GSQ+PLKKRL+                                    LYKDE DR++L
Sbjct: 60   PSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKL 119

Query: 658  AQMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAV-SAKETXXXXXXXXXXXXXXXX 834
            AQM+EL+RE+IL+DRA ++ D+ LTE++R+K+   K   S KET                
Sbjct: 120  AQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSA 179

Query: 835  XXXX-KDDALNELRAKRMKQQDPEGYRKSRDAARG--GNYXXXXXXXXXXXXXXXXXXXX 1005
                 KDDALNELRAKR+KQQDPE +RK RDA+RG  G+                     
Sbjct: 180  DRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSS 239

Query: 1006 XXXXXXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFE 1185
                            G+  + +SDE+  PG    T +DIK ITIRR+KLAKW +EP+FE
Sbjct: 240  ESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWFE 299

Query: 1186 EVVVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSE 1359
            E+++GCFVR+GIG+ +    +YRLC V NVDA++ DK Y LE KST+KYLNV +G   S 
Sbjct: 300  ELIIGCFVRVGIGRSK-TGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSA 358

Query: 1360 ARWQM 1374
            ARWQM
Sbjct: 359  ARWQM 363


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  257 bits (657), Expect = 7e-66
 Identities = 160/363 (44%), Positives = 200/363 (55%), Gaps = 6/363 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQ-REGXXXXXXXXXXXXXXXXXPGYVSRK 480
            MADLENLLLEAAGRTG  SGRNR+S  PSRR+ REG                  GY +RK
Sbjct: 1    MADLENLLLEAAGRTG-KSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRK 59

Query: 481  PAGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEYDREQL 657
            P+GSQ+PLKKRL+                                    LYKDE DR++L
Sbjct: 60   PSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKL 119

Query: 658  AQMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAV-SAKETXXXXXXXXXXXXXXXX 834
            AQM+EL+RE+IL+DRA ++ D+ LTE++R K+   K   S KET                
Sbjct: 120  AQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSA 179

Query: 835  XXXX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXX 1011
                 KDDALNELRAKR+KQQDPE +RK RD +RG                         
Sbjct: 180  DRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSS 239

Query: 1012 XXXXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEV 1191
                          G+  + +SDE+  PG    T +DIK ITIRR+KLAKW +EP+FEE+
Sbjct: 240  ESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEEL 299

Query: 1192 VVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEAR 1365
            ++GCFVR+GIG+ +    +YRLC V NVDA++ DK Y LE KST+KYLNV +G   S AR
Sbjct: 300  IIGCFVRVGIGRSK-SGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAAR 358

Query: 1366 WQM 1374
            WQM
Sbjct: 359  WQM 361


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  255 bits (651), Expect = 4e-65
 Identities = 162/361 (44%), Positives = 203/361 (56%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            M DLENLLLEAAGRT  A G++RHS PPS R+REG                  G+ SRKP
Sbjct: 1    MGDLENLLLEAAGRTNPA-GKSRHSHPPSSRRREGSYSDGSSDSRDDSDDDR-GFASRKP 58

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRL+                                   LYK+E DR++LA 
Sbjct: 59   SGSQVPLKKRLE-AEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 117

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKA-VSAKETXXXXXXXXXXXXXXXXXX 840
            MTE +REMIL++RA ++ D+  TE++R+K+  +K  VS KET                  
Sbjct: 118  MTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADR 177

Query: 841  XX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKRMKQQDP   RK RDA++GG+                         
Sbjct: 178  AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGS--GSRDFSSLKRKPLASSNLSNSSQ 235

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                        G++   +SD+++S   D+ T +DIK ITIRRSKLAKWL+EPFFEE++V
Sbjct: 236  SDSDSRSQSDDEGSNAGLDSDDDRS---DMPTFEDIKEITIRRSKLAKWLMEPFFEELIV 292

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFGK--SEARWQ 1371
            GCFVR+GIG+ +    IYRLC V NVDA+D DK Y LE K+THKYLNVI+G   S ARWQ
Sbjct: 293  GCFVRVGIGRSK-SGPIYRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNETSAARWQ 351

Query: 1372 M 1374
            M
Sbjct: 352  M 352


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  253 bits (647), Expect = 1e-64
 Identities = 161/361 (44%), Positives = 202/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            M DL++LLLEAAGRT  A GR+RHS PPS R+REG                  GY SRKP
Sbjct: 1    MVDLDDLLLEAAGRTN-APGRSRHSHPPSSRRREGSYSDGGSDSRDDSDEER-GYASRKP 58

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRL+                                   LYK+E DR++LA 
Sbjct: 59   SGSQVPLKKRLE-AEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 117

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKA-VSAKETXXXXXXXXXXXXXXXXXX 840
            MTE +REMIL++RA ++ D+  TE++R+K+  +K  VS KET                  
Sbjct: 118  MTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSADR 177

Query: 841  XX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKRMKQQ+P   RK RDA++GG+                         
Sbjct: 178  AAAKDDALNELRAKRMKQQEPASLRKLRDASKGGS-GSRDFSSMKRKPLASSNLSNSSQS 236

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                         N  + +SD+++S   DV T +DIK ITIRRSKLAKWL+EPFFEE++V
Sbjct: 237  DSDSRSQSDDEGSNGGMVDSDDDRS---DVPTFEDIKDITIRRSKLAKWLMEPFFEELIV 293

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ + +  IYRLC V NVDA+D DK Y LE K+THKYLN I+G   S ARWQ
Sbjct: 294  GCFVRVGIGRSK-NGPIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSAARWQ 352

Query: 1372 M 1374
            M
Sbjct: 353  M 353


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  253 bits (646), Expect = 1e-64
 Identities = 164/370 (44%), Positives = 201/370 (54%), Gaps = 13/370 (3%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            M DLENLLLEAAGRT  A GR+RH  PPS R+REG                  GY SRKP
Sbjct: 1    MGDLENLLLEAAGRTNSA-GRSRH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKP 56

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRL+                                   LYK+E DR++LA 
Sbjct: 57   SGSQVPLKKRLE-AEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 115

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKA-VSAKETXXXXXXXXXXXXXXXXXX 840
            MTE +REMILS+RA ++ D+  TE++R+K+  +K  VS KET                  
Sbjct: 116  MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 175

Query: 841  XX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKRMKQQDP   RK RDA++GG+                         
Sbjct: 176  AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGS-------------GSRDFSSTKRKP 222

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPG---------KDVLTLDDIKTITIRRSKLAKWLL 1170
                         +D   +SD+E S G          DV T +D+K +TIRRSKLAKWL+
Sbjct: 223  LASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLM 282

Query: 1171 EPFFEEVVVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG 1350
            EPFFEE++VGCFVR+GIG+ +    IYRLC V NVDA+D DK Y LE K+THKYLNV++G
Sbjct: 283  EPFFEELIVGCFVRVGIGRSK-SGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWG 341

Query: 1351 K--SEARWQM 1374
               S ARWQM
Sbjct: 342  NETSAARWQM 351


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  252 bits (643), Expect = 3e-64
 Identities = 162/361 (44%), Positives = 201/361 (55%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            M DLENLLLEAAGRT  A GR+RH  PPS R+REG                  GY SRKP
Sbjct: 1    MGDLENLLLEAAGRTNSA-GRSRH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKP 56

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRL+                                   LYK+E DR++LA 
Sbjct: 57   SGSQVPLKKRLE-AEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 115

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKA-VSAKETXXXXXXXXXXXXXXXXXX 840
            MTE +REMIL++RA ++ D+  TE++R+K+  +K  VS KET                  
Sbjct: 116  MTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADR 175

Query: 841  XX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKRMKQQDP   RK RDA++GG+                         
Sbjct: 176  AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGS-GSRDFSSMKRKPLASSNLSSSSQS 234

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                         N  + +SD+++S   DV T +D+K ITIRRSKLAKWL+EPFFEE++V
Sbjct: 235  DSDSRSQSDDEGSNAGMLDSDDDRS---DVPTFEDVKEITIRRSKLAKWLMEPFFEELIV 291

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFGK--SEARWQ 1371
            GCFVR+GIG+ +    IYRLC V NVDA+D DK Y LE K+THKYLNV++G   S ARWQ
Sbjct: 292  GCFVRVGIGRSK-SGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQ 350

Query: 1372 M 1374
            M
Sbjct: 351  M 351


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  251 bits (640), Expect = 7e-64
 Identities = 162/370 (43%), Positives = 198/370 (53%), Gaps = 13/370 (3%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            M DLENLLLEAAGRT  A    R S PPS R+REG                  GY SRKP
Sbjct: 1    MGDLENLLLEAAGRTNSAG---RSSHPPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKP 56

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRL+                                   LYK+E DR++LA 
Sbjct: 57   SGSQVPLKKRLE-AEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 115

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKA-VSAKETXXXXXXXXXXXXXXXXXX 840
            MTE +REMILS+RA ++ D+  TE++R+K+  +K  VS KET                  
Sbjct: 116  MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 175

Query: 841  XX-KDDALNELRAKRMKQQDPEGYRKSRDAARGGNYXXXXXXXXXXXXXXXXXXXXXXXX 1017
               KDDALNELRAKRMKQQDP   RK RDA++GG+                         
Sbjct: 176  AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGS-------------GSRDFSSTKRKP 222

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPG---------KDVLTLDDIKTITIRRSKLAKWLL 1170
                         +D   +SD+E S G          DV T +D+K +TIRRSKLAKWL+
Sbjct: 223  LASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLM 282

Query: 1171 EPFFEEVVVGCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG 1350
            EPFFEE++VGCFVR+GIG+ +    IYRLC V NVDA+D DK Y LE K+THKYLNV++G
Sbjct: 283  EPFFEELIVGCFVRVGIGRSK-SGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWG 341

Query: 1351 K--SEARWQM 1374
               S ARWQM
Sbjct: 342  NETSAARWQM 351


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  241 bits (615), Expect = 5e-61
 Identities = 152/361 (42%), Positives = 194/361 (53%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRT  A GRNRHS   S+R+REG                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTNSA-GRNRHSASSSKRRREGSYSGSDSRDDDSDDNR--GYGSRKP 57

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRLDPT                                    +E D +   Q
Sbjct: 58   SGSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDS----------SNESDDDNHGQ 107

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXXX 843
            MTELEREM++ +R  ++ D+ L ++ R+++  +   S KET                   
Sbjct: 108  MTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA 167

Query: 844  X-KDDALNELRAKRMKQQDPEGYRKSRDAARGGN-YXXXXXXXXXXXXXXXXXXXXXXXX 1017
              KDDALNELRAKR+KQQDPE +R+ RDA+RGG+                          
Sbjct: 168  AAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSES 227

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                        G+  + +SD++ +PG    T DDIK ITIRRSKLAKW +EPFFEE++V
Sbjct: 228  ESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIV 287

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ + +  IYRLC V NVDA++ D+ Y LE ++T KYLNV +G   S ARWQ
Sbjct: 288  GCFVRVGIGRSK-NGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQ 346

Query: 1372 M 1374
            M
Sbjct: 347  M 347


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  239 bits (610), Expect = 2e-60
 Identities = 151/361 (41%), Positives = 193/361 (53%), Gaps = 4/361 (1%)
 Frame = +1

Query: 304  MADLENLLLEAAGRTGGASGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXPGYVSRKP 483
            MADLENLLLEAAGRT  A GRNRHS   S+R+REG                  GY SRKP
Sbjct: 1    MADLENLLLEAAGRTNSA-GRNRHSASSSKRRREGSYSGSDSRDDDSDDNR--GYGSRKP 57

Query: 484  AGSQIPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEYDREQLAQ 663
            +GSQ+PLKKRLDP                                     +E D +   Q
Sbjct: 58   SGSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDS----------SNESDDDNHGQ 107

Query: 664  MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKAVSAKETXXXXXXXXXXXXXXXXXXX 843
            MTELEREM++ +R  ++ D+ L ++ R+++  +   S KET                   
Sbjct: 108  MTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA 167

Query: 844  X-KDDALNELRAKRMKQQDPEGYRKSRDAARGGN-YXXXXXXXXXXXXXXXXXXXXXXXX 1017
              KDDALNELRAKR+KQQDPE +R+ RDA+RGG+                          
Sbjct: 168  AAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSES 227

Query: 1018 XXXXXXXXXXXXGNDELGESDEEKSPGKDVLTLDDIKTITIRRSKLAKWLLEPFFEEVVV 1197
                        G+  + +SD++ +PG    T DDIK ITIRRSKLAKW +EPFFEE++V
Sbjct: 228  ESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIV 287

Query: 1198 GCFVRLGIGKDRDDNSIYRLCKVLNVDASDSDKQYVLEGKSTHKYLNVIFG--KSEARWQ 1371
            GCFVR+GIG+ + +  IYRLC V NVDA++ D+ Y LE ++T KYLNV +G   S ARWQ
Sbjct: 288  GCFVRVGIGRSK-NGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQ 346

Query: 1372 M 1374
            M
Sbjct: 347  M 347