BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00025955
         (1663 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              636   e-179
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   636   e-179
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   629   e-178
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   629   e-177
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   621   e-175
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   620   e-175
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...   608   e-171
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   607   e-171
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...   603   e-170
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   600   e-169
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   599   e-168
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   597   e-168
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   597   e-168
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   590   e-166
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   590   e-166
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   589   e-165
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...   589   e-165
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   587   e-165
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...   586   e-165
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   580   e-163

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  636 bits (1640), Expect = e-179
 Identities = 310/502 (61%), Positives = 390/502 (77%), Gaps = 5/502 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L++E+L  FC++V+V+FF+EYGLI HQINS+NDF+  GIQ +FDS GEI VEPGYDPSK+
Sbjct: 77   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 136

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+G+WRYASV+FGKV+LERP++W GE    DGK+S   L FLP+HARLQNM+YS+RMK +
Sbjct: 137  GEGDWRYASVRFGKVTLERPRVWAGES---DGKES---LNFLPRHARLQNMTYSSRMKAQ 190

Query: 1132 MKVQVYIQKLMNSDKFKTGKE-QYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGD 956
            +  QVY QKL+ SDK+KTGK+ +Y+ K+VI E++ D+LIGRIPVMV+S +CWM   E+GD
Sbjct: 191  VHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGD 250

Query: 955  CEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAE 776
            CE+DHGGYFLIKGAEK FIAQEQICLKRLWVS  P W +AYR  ++++RVYVK+E P+ E
Sbjct: 251  CEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDE 310

Query: 775  KKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEA 596
                  +KV+ V+  S  IP+WIL FALG SSDKE+V+       D  + N+L+++I+EA
Sbjct: 311  NNRGG-EKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 369

Query: 595  DEVCEG----FRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGY 428
            D   E     FRR G A+ +++  +K+ KFPP E +++CI KYLFP+    KQKA FLGY
Sbjct: 370  DREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGY 429

Query: 427  MVKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDR 248
            MVK LL +  GRRKCDNRDDFRNK             R+ I HA++RMVKAMQR+LYGDR
Sbjct: 430  MVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDR 489

Query: 247  SLRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTR 68
             LRPI++Y+DASIITNGLSRAFSTG W+HPF R ER SGVVATLRRTNPLQ  ADMRKTR
Sbjct: 490  DLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTR 549

Query: 67   QHVKYTGRILDARFPNPSHWGK 2
            Q V+YTG++ DAR+P+PSHWGK
Sbjct: 550  QQVQYTGKVGDARYPHPSHWGK 571


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  636 bits (1640), Expect = e-179
 Identities = 310/502 (61%), Positives = 390/502 (77%), Gaps = 5/502 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L++E+L  FC++V+V+FF+EYGLI HQINS+NDF+  GIQ +FDS GEI VEPGYDPSK+
Sbjct: 41   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 100

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+G+WRYASV+FGKV+LERP++W GE    DGK+S   L FLP+HARLQNM+YS+RMK +
Sbjct: 101  GEGDWRYASVRFGKVTLERPRVWAGES---DGKES---LNFLPRHARLQNMTYSSRMKAQ 154

Query: 1132 MKVQVYIQKLMNSDKFKTGKE-QYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGD 956
            +  QVY QKL+ SDK+KTGK+ +Y+ K+VI E++ D+LIGRIPVMV+S +CWM   E+GD
Sbjct: 155  VHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGD 214

Query: 955  CEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAE 776
            CE+DHGGYFLIKGAEK FIAQEQICLKRLWVS  P W +AYR  ++++RVYVK+E P+ E
Sbjct: 215  CEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDE 274

Query: 775  KKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEA 596
                  +KV+ V+  S  IP+WIL FALG SSDKE+V+       D  + N+L+++I+EA
Sbjct: 275  NNRGG-EKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 333

Query: 595  DEVCEG----FRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGY 428
            D   E     FRR G A+ +++  +K+ KFPP E +++CI KYLFP+    KQKA FLGY
Sbjct: 334  DREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGY 393

Query: 427  MVKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDR 248
            MVK LL +  GRRKCDNRDDFRNK             R+ I HA++RMVKAMQR+LYGDR
Sbjct: 394  MVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDR 453

Query: 247  SLRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTR 68
             LRPI++Y+DASIITNGLSRAFSTG W+HPF R ER SGVVATLRRTNPLQ  ADMRKTR
Sbjct: 454  DLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTR 513

Query: 67   QHVKYTGRILDARFPNPSHWGK 2
            Q V+YTG++ DAR+P+PSHWGK
Sbjct: 514  QQVQYTGKVGDARYPHPSHWGK 535


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score =  629 bits (1623), Expect = e-178
 Identities = 303/497 (60%), Positives = 380/497 (76%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC++ S  FF +YGLISHQINSYNDF+N GIQ +FDS+GEI VEPGYDPSK+
Sbjct: 61   LGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            GDG+W++ASVKFGKV+LERPK W GEK  +DG K   +L  LP+HARLQNM+YSAR+ VE
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKE--YLDLLPRHARLQNMTYSARIMVE 178

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
              VQVY +KL+ SDKFKTG ++++ KE   E+  DVLIGRIPVMV S +CWM   +K DC
Sbjct: 179  THVQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDC 238

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            EFDHGGYF++KGAEK FIAQEQ+CLKRLWVS+ P W + YR   +++RVY+K+      +
Sbjct: 239  EFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLE 298

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +K ++V++L+  +P+W+L FALG+SSD+E+V        D ++VN+L+++I+EAD
Sbjct: 299  HIKGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 357

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
            + CE FR+  KAL Y++  IKN KFPP+E +++CI+ YLFP+L   KQKA FLGYMVK L
Sbjct: 358  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 417

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L S  GRRK DNRDDFRNK             R  I HA++RMVKAMQRDLYGDR ++PI
Sbjct: 418  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 477

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  ADMRK+RQ V Y
Sbjct: 478  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 537

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 538  TGKVGDARYPHPSHWGK 554


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score =  629 bits (1621), Expect = e-177
 Identities = 303/497 (60%), Positives = 379/497 (76%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E +L  FC++ S  FF +YGLISHQINSYNDF+N GIQ +FDS+GEI VEPGYDPSK+
Sbjct: 61   LGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            GDG+W++ASVKFGKV+LERPK W GEK   DG K   +L  LP+HARLQNM+YSAR+ VE
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSADGGKE--YLDLLPRHARLQNMTYSARIMVE 178

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
              VQVY +KL+ SDKFKTG +Q++ KE   E+  DVLIGRIPVMV S +CWM   +K DC
Sbjct: 179  THVQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDC 238

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            EFDHGGYF++KGAEK FIAQEQ+CLKRLWVS+ P W + YR   +++RVY+K+      +
Sbjct: 239  EFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLE 298

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +K ++V++L+  +P+W+L FALG+SSD+E+V        D ++VN+L+++I+EAD
Sbjct: 299  HIKGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 357

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
            + CE FR+  KAL Y++  IKN KFPP+E +++CI+ YLFP+L   KQKA FLGYMVK L
Sbjct: 358  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 417

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L S  GRRK DNRDDFRNK             R  I HA++RMVKAMQRDLYGDR ++PI
Sbjct: 418  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 477

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  ADMRK+RQ V Y
Sbjct: 478  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 537

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 538  TGKVGDARYPHPSHWGK 554


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  621 bits (1602), Expect = e-175
 Identities = 301/497 (60%), Positives = 376/497 (75%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC++ S  FF +YG ISHQINSYNDF+N GIQ +FDS+GEI VEPGYDPSK+
Sbjct: 55   LGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 114

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            GDG+W++ASVKFGKV+LERPK W GEK  + G K   +L  LP+HARLQNM+YSAR+ VE
Sbjct: 115  GDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKE--YLDLLPRHARLQNMTYSARIMVE 172

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
              VQVY +KL+ SDKFKTG ++++ KE   E   DVLIGRIPVMV S +CWM   +K DC
Sbjct: 173  THVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDC 232

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            EFDHGGYF+ KGAEK FIAQEQ+CLKRLWVS+ P W + YR   +++RVY+K+      +
Sbjct: 233  EFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLE 292

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +K ++V++L+  +P+W+L FALG+SSD+E+V        D ++VN+L+++I+EAD
Sbjct: 293  HIKGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 351

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
            + CE FR+  KAL Y++  IKN KFPP+E +++CI+ YLFP+L   KQKA FLGYMVK L
Sbjct: 352  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 411

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L S  GRRK DNRDDFRNK             R  I HA++RMVKAMQRDLYGDR ++PI
Sbjct: 412  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 471

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  ADMRK+RQ V Y
Sbjct: 472  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 531

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 532  TGKVGDARYPHPSHWGK 548


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  620 bits (1599), Expect = e-175
 Identities = 294/497 (59%), Positives = 385/497 (77%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L EEFL  FCR+ +V+FF+EYGL+SHQINSYN+F+  G+Q  FDS GE  VEPGYDPSKK
Sbjct: 42   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKK 101

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+GEWRYAS++FG+V+L++P  + G   +        H  F P+HARLQNM+YS+RMKV+
Sbjct: 102  GEGEWRYASMRFGQVTLDKPSFFAGNGGD-------EHDMF-PRHARLQNMTYSSRMKVK 153

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            ++ QVY QK + SDKFKTG+EQY+ KEV+++E+TD++IGRIPVMV+S++CWM+  EKGDC
Sbjct: 154  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDC 213

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            +FDHGGYF+IKGAEKVF+AQEQICLKRLWVS+   WT+AY+SE ++ R+ V++      +
Sbjct: 214  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE 273

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +KV++V+ LS  IP+WIL FALG+SSDKEIV        D S++N+L ++I++AD
Sbjct: 274  DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 333

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
              C+ FR+   ALKY++  IK   FPP E  ++C++ YLFPSL   KQKA FLGYMVK L
Sbjct: 334  NKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCL 393

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L + +GRRKCDNRDDFRNK             ++ I HA+KRM KA+QRDLYGDR++RPI
Sbjct: 394  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 453

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            ++Y+DASI+TNGLSRAFSTGAW+HPF RTER SG+VA L R NPLQT+ D+R+TRQ V+Y
Sbjct: 454  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 513

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 514  TGKVGDARYPHPSHWGK 530


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score =  608 bits (1567), Expect = e-171
 Identities = 292/493 (59%), Positives = 372/493 (75%)
 Frame = -1

Query: 1480 FLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKKGDGE 1301
            FL  FC++ S  FF +YGLISHQI+SYNDF+  GIQ +FDS+GEI VEPGYDPSKKG+GE
Sbjct: 63   FLRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGE 122

Query: 1300 WRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVEMKVQ 1121
            W++ASVKFG V L+RPK W GEK        E +L   P+HARLQNM+YSAR+ VE  VQ
Sbjct: 123  WKHASVKFGNVILDRPKFWAGEK--YSAYNGEEYLNMWPRHARLQNMTYSARIIVETHVQ 180

Query: 1120 VYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDCEFDH 941
            V+ +KL+ SDKFKTG EQ++ KE + E+  DV IGRIPVMV S +CWM   ++ DCEFDH
Sbjct: 181  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDH 240

Query: 940  GGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEKKCPQ 761
            GGYF++KGAEK+FIAQEQ+CLKRLWVS+   W +AYRS  ++ RVY+K+      ++   
Sbjct: 241  GGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKG 300

Query: 760  LQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEADEVCE 581
              K ++V+ L+  +P+W+L FALG+SSD+E+V+       DN ++N+L+++I++AD+ CE
Sbjct: 301  EAKSLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCE 359

Query: 580  GFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSLLLSS 401
             FR+  +AL Y++  IK+ KFPP+E +++CI +YLFP+L   KQKA FLGYMVK LLLS 
Sbjct: 360  DFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSY 419

Query: 400  AGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPIDHYI 221
             GRRK DNRDDFRNK             R+ I HA++RMVKA+QRDL GDR + PI+HY+
Sbjct: 420  IGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYL 479

Query: 220  DASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKYTGRI 41
            DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  AD+RKTRQ V YTG++
Sbjct: 480  DASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKV 539

Query: 40   LDARFPNPSHWGK 2
             DAR+PNPSHWGK
Sbjct: 540  GDARYPNPSHWGK 552


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score =  607 bits (1564), Expect = e-171
 Identities = 291/493 (59%), Positives = 373/493 (75%)
 Frame = -1

Query: 1480 FLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKKGDGE 1301
            FL  FC++ S  FF +YG+ISHQI+SYNDF+  GIQ +FDS+GEI VEPGYDPSKKG+GE
Sbjct: 63   FLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGE 122

Query: 1300 WRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVEMKVQ 1121
            W++ASVKFGKV+L+RPK W GEK        E +L   P+HARLQNM+YSAR+ VE  VQ
Sbjct: 123  WKHASVKFGKVTLDRPKFWAGEK--FSAYNGEEYLDLWPRHARLQNMTYSARIIVETHVQ 180

Query: 1120 VYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDCEFDH 941
            V+ +KL+ SDKFKTG EQ++ KE + E+  DV IGRIPVMV S +CWM   ++ DC+FDH
Sbjct: 181  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDH 240

Query: 940  GGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEKKCPQ 761
            GGYF++KGAEK+FIAQEQICLKRLWVS+   W +AYRS  ++ RVY+K+      +    
Sbjct: 241  GGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKG 300

Query: 760  LQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEADEVCE 581
              K ++V+ L+  +P+W+L FALG+SSD+EIV+       D +++N+L+++I++AD+ CE
Sbjct: 301  EAKALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCE 359

Query: 580  GFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSLLLSS 401
             FR+  KAL Y++  IK+ KFPP+E +++CI +YLFP+L   KQKA FLGYMVK LLLS 
Sbjct: 360  DFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSY 419

Query: 400  AGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPIDHYI 221
             GRRK DNRDDFRNK             R  I HA++RMVKA+QRDL GDR ++P++HY+
Sbjct: 420  IGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYL 479

Query: 220  DASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKYTGRI 41
            DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  AD+RKTRQ V YTG++
Sbjct: 480  DASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKV 539

Query: 40   LDARFPNPSHWGK 2
             DAR+P+PSHWGK
Sbjct: 540  GDARYPHPSHWGK 552


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  603 bits (1555), Expect = e-170
 Identities = 288/501 (57%), Positives = 375/501 (74%), Gaps = 4/501 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC+E ++AFF+EYGLISHQINSYNDF+  GIQ +FDS GEI VEPGYDPSKK
Sbjct: 46   LGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSKK 105

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+ EWRYASVKFGKV+L  P  W        G   E   + LP+HARLQNMSY+++MKV 
Sbjct: 106  GESEWRYASVKFGKVTLGMPSFW-------GGSDDEKEYKMLPRHARLQNMSYASKMKVN 158

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + V+VY QKL++SDKFKTGK QYL K++++ ++ D++IG +PVMV+S++CWM++ EKGDC
Sbjct: 159  ITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDC 218

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            +FDHGGYF+IKGAEK FIAQEQ CLKRL +++    T+AYRSE ++ R+ +++      +
Sbjct: 219  DFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLE 278

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                ++KV+ V+ +S  IP+WI  FALG+SSD+E++        D S+ N+L ++I +AD
Sbjct: 279  NIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDAD 338

Query: 592  EVCE----GFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYM 425
            ++ +    GFRR   ALKY++  I+   FPP E +++CI  YLFP+L   KQKA FLGYM
Sbjct: 339  KLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYM 398

Query: 424  VKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRS 245
            VKSLL + AGRRKCDNRDDFRNK             +  I HA++RM KA+QRDLYGDR+
Sbjct: 399  VKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRA 458

Query: 244  LRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQ 65
            +RPI+HY+DASI+TNG+SRAFSTGAW HPF R ER SGVVAT+ R NPLQT+ DMRKTRQ
Sbjct: 459  VRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQ 518

Query: 64   HVKYTGRILDARFPNPSHWGK 2
             V+YTG++ DAR+P+PSHWGK
Sbjct: 519  QVQYTGKVGDARYPHPSHWGK 539


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  600 bits (1547), Expect = e-169
 Identities = 290/497 (58%), Positives = 366/497 (73%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC+E S +FFSEYGLISHQINSYNDF+  G+Q +FDS G++ VEPGYDPSKK
Sbjct: 43   LGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKK 102

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
               EWRYA V+FGKV+L+ P  W        G   +     LP+HARLQNM+YS+RMKV 
Sbjct: 103  RQNEWRYALVRFGKVTLDLPSFW-------GGADKDKEYNLLPRHARLQNMTYSSRMKVN 155

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + ++VY QKL+ SDKFKTGKEQ+L KE+I+ E  DV+IGRIPVMV+S++CWM++ EKGDC
Sbjct: 156  VHIEVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDC 215

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
             FDHGGYF+IKGAEK FIAQEQIC KRLW++     T+AY+SE ++ R+ +++     E 
Sbjct: 216  YFDHGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLED 275

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
               + + V+ V+ LS  IP+WIL FALG+SSDKE+V+       D S++N+L  +I  +D
Sbjct: 276  TTVE-KDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISD 334

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
            EVC GFRR  KAL ++E  IK  +FPP E  ++C+D +LFP+L    QKA FLGYMVK L
Sbjct: 335  EVCAGFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCL 394

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L +  GRRKC+N+DDFRNK             R Q+ HA+KR  KA+QRDLYGD+ LR I
Sbjct: 395  LQAFTGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQI 454

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            + Y+DASI+TNGLSRAFSTGAW HPF +TER SGVVA + RTNPLQTV DMRKTRQ V+Y
Sbjct: 455  EFYLDASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQY 514

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 515  TGKVGDARYPHPSHWGK 531


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  599 bits (1545), Expect = e-168
 Identities = 286/493 (58%), Positives = 371/493 (75%)
 Frame = -1

Query: 1480 FLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKKGDGE 1301
            FL  FC++ S  FF +YG+ISHQI+SYNDF+  GIQ +FDS+GEI VEPGYDPSKKG+G+
Sbjct: 67   FLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGD 126

Query: 1300 WRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVEMKVQ 1121
            W++ASVKFGKV+L+RPK W GEK        E +L   P+HARLQNM+YSAR+ VE    
Sbjct: 127  WKHASVKFGKVTLDRPKFWAGEK--FSAYNGEEYLNLWPRHARLQNMTYSARIIVE--TH 182

Query: 1120 VYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDCEFDH 941
            V+ +KL+ SDKFKTG EQ++ KE + E+  DV IGRIPVMV S +CWM   ++ DCEFDH
Sbjct: 183  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCEFDH 242

Query: 940  GGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEKKCPQ 761
            GGYF++KGAEK+FIAQEQICLKRLWVS+   W +AYRS  ++ RVY+K+      +    
Sbjct: 243  GGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKG 302

Query: 760  LQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEADEVCE 581
              K ++V+  +  +P+W+L FALG+SSD+E+V+       D +++N+L+++I++AD+ CE
Sbjct: 303  EAKALSVYFFA-EMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCE 361

Query: 580  GFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSLLLSS 401
             FR+  KAL Y++  +K+ KFPP+E +++CI +YLFP+L   KQKA FLGYMVK LLLS 
Sbjct: 362  DFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSY 421

Query: 400  AGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPIDHYI 221
             GRRK DNRDDFRNK             R+ + HA++RMVKA+QRDL GDR ++PI+HY+
Sbjct: 422  IGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYL 481

Query: 220  DASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKYTGRI 41
            DASIITNGLSRAFSTG W HP+ R ER SGVVATLRRTNPLQ  AD+RKTRQ V YTG++
Sbjct: 482  DASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKV 541

Query: 40   LDARFPNPSHWGK 2
             DAR+P+PSHWGK
Sbjct: 542  GDARYPHPSHWGK 554


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  597 bits (1540), Expect = e-168
 Identities = 285/501 (56%), Positives = 374/501 (74%), Gaps = 4/501 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC++ S+AFF++YGLISHQINSYNDF+  GIQ  FD  G+I V+PGYDPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            GDGEWRYA+VKFGKV+L++PK W        G  S      LP+HARLQNM+YS+RMK+ 
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFW-------GGAASGKEYNMLPRHARLQNMTYSSRMKIN 155

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVI--TEESTDVLIGRIPVMVRSNICWMEECEKG 959
            + +++Y QKL++SDKFKTGK+QY+ KE +    ++ DV IGR+PVMV S++CWM++ +K 
Sbjct: 156  ISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKR 215

Query: 958  DCEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEA 779
            DCEFD GGYFLIKGAEK+FIAQEQICL+RLW+S+   WT+AYRSE ++ R+ +++     
Sbjct: 216  DCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSK 275

Query: 778  EKKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINE 599
             +     +KV+NV+ LS  +P+WIL FALG+SSDKEIV+       D +++N+L +++ E
Sbjct: 276  SEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVRE 335

Query: 598  AD--EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYM 425
             D  +  + FRR  +AL +++NEI+   FPP + ++DC++ YLF SL   KQK  FLGYM
Sbjct: 336  VDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYM 395

Query: 424  VKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRS 245
            VK LL +  GRRKCDNRDDFRNK             ++ I HA++RM KA+QRDLYGDR 
Sbjct: 396  VKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQ 455

Query: 244  LRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQ 65
            + PI+HY+DASIITNGLSRAFSTGAWAH F R ER SGVVATL R NPLQT+A++R+TRQ
Sbjct: 456  VHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQ 515

Query: 64   HVKYTGRILDARFPNPSHWGK 2
             V YTG++ DAR+P+PSHWG+
Sbjct: 516  QVAYTGKVGDARYPHPSHWGR 536


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score =  597 bits (1539), Expect = e-168
 Identities = 285/501 (56%), Positives = 374/501 (74%), Gaps = 4/501 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL  FC++ S+AFF++YGLISHQINSYNDF+  GIQ  FD  G+I V+PGYDPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            GDGEWRYA+VKFGKV+L++PK W        G  S      LP+HARLQNM+YS+RMK+ 
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFW-------GGAASGKEYNMLPRHARLQNMTYSSRMKIN 155

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVI--TEESTDVLIGRIPVMVRSNICWMEECEKG 959
            + +++Y QKL++SDKFKTGK+QY+ KE +    ++ DV IGR+PVMV S++CWM++ +K 
Sbjct: 156  ISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKR 215

Query: 958  DCEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEA 779
            DCEFD GGYFLIKGAEK+FIAQEQICL+RLW+S+   WT+AYRSE ++ R+ +++     
Sbjct: 216  DCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSK 275

Query: 778  EKKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINE 599
             +     +KV+NV+ LS  +P+WIL FALG+SSDKEIV+       D +++N+L +++ E
Sbjct: 276  SEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVRE 335

Query: 598  AD--EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYM 425
             D  +  + FRR  +AL +++NEI+   FPP + ++DC++ YLF SL   KQK  FLGYM
Sbjct: 336  VDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYM 395

Query: 424  VKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRS 245
            VK LL +  GRRKCDNRDDFRNK             ++ I HA++RM KA+QRDLYGDR 
Sbjct: 396  VKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQ 455

Query: 244  LRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQ 65
            + PI+HY+DASIITNGLSRAFSTGAWAH F R ER SGVVATL R NPLQT+A++R+TRQ
Sbjct: 456  VHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQ 515

Query: 64   HVKYTGRILDARFPNPSHWGK 2
             V YTG++ DAR+P+PSHWG+
Sbjct: 516  QVAYTGKVGDARYPHPSHWGR 536


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  590 bits (1521), Expect = e-166
 Identities = 277/497 (55%), Positives = 365/497 (73%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L EEFL  FC++ +V+FF EYGLISHQ+NSYN F+  G+QN FDS GE  +  GYDPSKK
Sbjct: 32   LGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKK 91

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+G+WR+A V+FGKV++ERP  W             N L  LP+HARLQNM+YS+RMKV 
Sbjct: 92   GEGDWRHARVRFGKVTVERPTFW--------AVSGGNELNMLPRHARLQNMTYSSRMKVN 143

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + +QVY  K + SDKFKTG+E+++ +EV+ +++ D++IGRIPVMVRS++CWM E EK DC
Sbjct: 144  VDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADC 203

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            +FDHGGYFLIKG EK+FIAQEQI +KRLW+S+   WTIAYRSE ++ R+ +++      +
Sbjct: 204  DFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVE 263

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +KV+ V+ LS  IP+W+L FALG+SSDKE+V        D+S+ N+L ++I  AD
Sbjct: 264  YIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNAD 323

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
              C  F +   A+ Y+   +K+ +FPPEE +++C+  YLFP+L S KQKA FLGYMVK L
Sbjct: 324  GKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCL 383

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L +  GR KCDNRDDFRNK             ++ I HA++RM K +QRDLY DR++RPI
Sbjct: 384  LQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPI 443

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASI+TNGLSRAFSTGAW+HP+ R ER SGVVA L R NPLQT+ D+RKTRQ V+Y
Sbjct: 444  EHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQY 503

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 504  TGKVGDARYPHPSHWGK 520


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  590 bits (1521), Expect = e-166
 Identities = 277/497 (55%), Positives = 365/497 (73%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L EEFL  FC++ +V+FF EYGLISHQ+NSYN F+  G+QN FDS GE  +  GYDPSKK
Sbjct: 32   LGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKK 91

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+G+WR+A V+FGKV++ERP  W             N L  LP+HARLQNM+YS+RMKV 
Sbjct: 92   GEGDWRHARVRFGKVTVERPTFW--------AVSGGNELNMLPRHARLQNMTYSSRMKVN 143

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + +QVY  K + SDKFKTG+E+++ +EV+ +++ D++IGRIPVMVRS++CWM E EK DC
Sbjct: 144  VDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADC 203

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            +FDHGGYFLIKG EK+FIAQEQI +KRLW+S+   WTIAYRSE ++ R+ +++      +
Sbjct: 204  DFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVE 263

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                 +KV+ V+ LS  IP+W+L FALG+SSDKE+V        D+S+ N+L ++I  AD
Sbjct: 264  YIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNAD 323

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
              C  F +   A+ Y+   +K+ +FPPEE +++C+  YLFP+L S KQKA FLGYMVK L
Sbjct: 324  GKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCL 383

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L +  GR KCDNRDDFRNK             ++ I HA++RM K +QRDLY DR++RPI
Sbjct: 384  LQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPI 443

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASI+TNGLSRAFSTGAW+HP+ R ER SGVVA L R NPLQT+ D+RKTRQ V+Y
Sbjct: 444  EHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQY 503

Query: 52   TGRILDARFPNPSHWGK 2
            TG++ DAR+P+PSHWGK
Sbjct: 504  TGKVGDARYPHPSHWGK 520


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  589 bits (1519), Expect = e-165
 Identities = 286/503 (56%), Positives = 375/503 (74%), Gaps = 6/503 (1%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            + E  L  FC + +  FF+EYGLISHQINSYNDF+N GIQ  FDS GE+ VEPGYDPSKK
Sbjct: 54   IGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKK 113

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+ EWRYASVKFGKV+LE+P  W G         ++ H + LP+HARLQNM+YS++MKV 
Sbjct: 114  GENEWRYASVKFGKVALEKPTFWSG---------ADEH-KMLPRHARLQNMTYSSKMKVN 163

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + V+VY +K++ SDKFKTGK+QY+ KEV+  ++ ++ IG +PVMV+S++CWM+  EKGDC
Sbjct: 164  VSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDC 223

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVK------IE 791
            +FDHGGYFLIKGAEKVFIAQEQICLKRLW+S+   WT++Y+SE ++ R+ V+      +E
Sbjct: 224  DFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALE 283

Query: 790  APEAEKKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLS 611
              +AEKKC      + V+ LS  IPLWIL FALG++SDKE+++       D  +VN+  +
Sbjct: 284  DVKAEKKC------LTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFA 337

Query: 610  TINEADEVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLG 431
            +I++ADE  EGFRR  +AL+Y+  +I+  +FPP E  +D    YLFP+L S +QKA FLG
Sbjct: 338  SIHDADEKTEGFRRGKEALEYVVRQIRGTRFPPGE-NEDFFLLYLFPTLHSLRQKARFLG 396

Query: 430  YMVKSLLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGD 251
            YMVK LL +  G+RKC+N D FRNK             ++ I HA++RM KA+Q+DLYGD
Sbjct: 397  YMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGD 456

Query: 250  RSLRPIDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKT 71
            R +RPI+HY+DASI+TNGLSRAFSTGAW+HP+ R ER SGVVA L R NPLQT+ D+RKT
Sbjct: 457  RDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKT 516

Query: 70   RQHVKYTGRILDARFPNPSHWGK 2
            R HV+YTG++ DARFP+PSHWG+
Sbjct: 517  RYHVQYTGKVGDARFPHPSHWGR 539


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score =  589 bits (1518), Expect = e-165
 Identities = 281/498 (56%), Positives = 370/498 (74%), Gaps = 1/498 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L ++ +  FC++ S+ FF EYGLISHQINSYN F   G+QN FDS G++ V PG+DPSKK
Sbjct: 47   LGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSKK 106

Query: 1312 GDGE-WRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKV 1136
            GD E +RYASVKFGKV+L+RP  W GE     G   E  ++ LP+HARLQ M+Y+++MKV
Sbjct: 107  GDNEHYRYASVKFGKVTLDRPMFWCGE-----GNTQE--MKMLPRHARLQRMTYASKMKV 159

Query: 1135 EMKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGD 956
             ++VQVYI K + SDKFKTGKE+Y+ +E+I +E+ ++ IGR+PVMV+S++CWM   EKGD
Sbjct: 160  NVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGD 219

Query: 955  CEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAE 776
            CEFDHGGYFLIKGAEK+FIAQEQI LKRLWV++ P W +AY+S+ ++ R+ VK+      
Sbjct: 220  CEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTV 279

Query: 775  KKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEA 596
            +     +KV+ V+ LS  IP+W+L FALG++SDK+IV+       D  + N+L ++I EA
Sbjct: 280  EGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREA 339

Query: 595  DEVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKS 416
            DE CE FRR   AL YIE  +K ++FPP E + +C++ Y+FP++    +KA +L YMVK 
Sbjct: 340  DEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKV 399

Query: 415  LLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRP 236
            LLL+  GRRK DNRDDFRNK             ++ I HA+KRM KA+QRDLYGDR +  
Sbjct: 400  LLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQ 459

Query: 235  IDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVK 56
            I+HY+DASIITNGL RAFSTGAW HP+ R ER SGVVATL RTNPLQT+A++R+TRQ V+
Sbjct: 460  IEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQ 519

Query: 55   YTGRILDARFPNPSHWGK 2
            YTG++ DAR+P+PSHWGK
Sbjct: 520  YTGKVGDARYPHPSHWGK 537


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score =  587 bits (1512), Expect = e-165
 Identities = 281/497 (56%), Positives = 362/497 (72%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            L E FL +FC+E SV+FF EYGL+SHQINSYNDFV  GIQ +FDS GEI VEP +DPSKK
Sbjct: 49   LGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKK 108

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVE 1133
            G+ +WR+A++KFGKV+L +P  W        G  S+     LP+HARLQNM+YSARM V 
Sbjct: 109  GNADWRFAAIKFGKVTLSKPCFW-------GGSDSDKEYNMLPRHARLQNMTYSARMSVN 161

Query: 1132 MKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDC 953
            + VQVY Q L+ SDKFKTG EQ L K  ++ +S D++IGRIPVMV+SN+CWM+  EKGDC
Sbjct: 162  ITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDC 221

Query: 952  EFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEK 773
            EFD GGYF+I GAEK FIAQEQ CLKRL +++    T+AYRSE ++ R+ +++      +
Sbjct: 222  EFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLE 281

Query: 772  KCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEAD 593
                ++KV++V+ +S  IP+WI  FALG+SSDKE+++       D S+ N+L ++I +AD
Sbjct: 282  NVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDAD 341

Query: 592  EVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSL 413
            E  + FRR   AL+Y+EN IK+  FPP E ++DCI  YLFP++   KQKA FLGYMVK L
Sbjct: 342  ERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCL 401

Query: 412  LLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPI 233
            L +S G RKCDNRDDFRNK             +  + HA+++M KA+QRDL GD  +RP+
Sbjct: 402  LQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRPV 461

Query: 232  DHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKY 53
            +HY+DASI+TNG+SRAFSTGAW HPF R ER SGVVA + R NPLQT+ DMRKTRQ V+Y
Sbjct: 462  EHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQY 521

Query: 52   TGRILDARFPNPSHWGK 2
            TG+  DAR+P+PSHWGK
Sbjct: 522  TGKAGDARYPHPSHWGK 538


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score =  586 bits (1511), Expect = e-165
 Identities = 289/498 (58%), Positives = 368/498 (73%), Gaps = 1/498 (0%)
 Frame = -1

Query: 1492 LSEEFLSKFCREVSVAFFSEYGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKK 1313
            LSE FL   CR+ S AFF +YGLISHQINSYNDFVN GIQ +FDSIGEI VEPGYDPSKK
Sbjct: 50   LSEGFLKVSCRKASTAFFDQYGLISHQINSYNDFVNHGIQKVFDSIGEIVVEPGYDPSKK 109

Query: 1312 GDGEWRYASVKFGKVSLERPKLWLGEK-AEIDGKKSENHLRFLPKHARLQNMSYSARMKV 1136
            G+G+W+ A +KFGKV+LERP  W GEK + +DG K  ++L  LP+HARLQNM+Y+A++KV
Sbjct: 110  GEGDWKRACLKFGKVTLERPTFWTGEKFSSVDGAK--DYLELLPRHARLQNMTYAAKIKV 167

Query: 1135 EMKVQVYIQKLMNSDKFKTGKEQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGD 956
            E  +QVY + L  SDKF TG E  + K ++ E   +V  GR+PVMV+S++CWM+  +K D
Sbjct: 168  ETHLQVYTKGLNRSDKFTTGVENTVEKTLLNEYHNEVNFGRLPVMVKSDLCWMKSLDKKD 227

Query: 955  CEFDHGGYFLIKGAEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAE 776
            CEFD GGYF+IKGAEK FIAQEQ+CLKRLWV+  P WT++YR   R+ RVY+K+  P+ E
Sbjct: 228  CEFDQGGYFVIKGAEKTFIAQEQLCLKRLWVTKIPSWTVSYRPVARRNRVYIKL-VPKME 286

Query: 775  KKCPQLQKVINVHVLSCRIPLWILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEA 596
                   K++ V+     I +W+L FALG+ +DKE+V+       D+ + N+L+++I +A
Sbjct: 287  HVIGA-DKILTVYFYVTEISVWVLFFALGIPNDKEVVKLIDLDIEDSDIANILIASIYDA 345

Query: 595  DEVCEGFRRDGKALKYIENEIKNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKS 416
            D+  EGFR++G + K+I+  ++N KFPP E ++D I  YLFP L +  QKA FLGYMVK 
Sbjct: 346  DKKYEGFRKEGNSSKHIKELMQNCKFPPTESIEDLIKNYLFPHLKTPIQKACFLGYMVKC 405

Query: 415  LLLSSAGRRKCDNRDDFRNKXXXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRP 236
            LL +  GRRK +NRDDFRNK             R+ I HA++RM KAMQRDLY DR ++ 
Sbjct: 406  LLEAYKGRRKVENRDDFRNKRLELAGELLERELRVHIKHAERRMTKAMQRDLYRDREVQS 465

Query: 235  IDHYIDASIITNGLSRAFSTGAWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVK 56
            ID Y+DASI+TNGLSRAFSTGAW HPF R ERTSGVVAT+RRTNPLQ +ADMRKTRQ V 
Sbjct: 466  IDQYLDASIVTNGLSRAFSTGAWCHPFKRMERTSGVVATIRRTNPLQAIADMRKTRQQVS 525

Query: 55   YTGRILDARFPNPSHWGK 2
            YTGR+ DAR+P+PSHWGK
Sbjct: 526  YTGRVGDARYPHPSHWGK 543


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score =  580 bits (1495), Expect = e-163
 Identities = 283/537 (52%), Positives = 373/537 (69%)
 Frame = -1

Query: 1612 DDMAVDLNSLVDMVDTLNPSPXXXXXXXXXXXXXXNEELCLSEEFLSKFCREVSVAFFSE 1433
            DDM +D++   D++DT N +                    L +E L  FC++ +  FF E
Sbjct: 20   DDMDMDMDE--DLMDTTNLNE-------------------LGKETLQSFCKKAASLFFDE 58

Query: 1432 YGLISHQINSYNDFVNQGIQNLFDSIGEIAVEPGYDPSKKGDGEWRYASVKFGKVSLERP 1253
            YGLISHQINSYN F+N G+Q +FDS GE+AVEPGYD SK+ DGEWR ASV+FGKV+L+RP
Sbjct: 59   YGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRP 118

Query: 1252 KLWLGEKAEIDGKKSENHLRFLPKHARLQNMSYSARMKVEMKVQVYIQKLMNSDKFKTGK 1073
              W        G  S+      P+HARLQNM+YSARMK+ + VQVY Q +  SDKFKTG 
Sbjct: 119  SFW-------GGTSSDAEHNMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGI 171

Query: 1072 EQYLLKEVITEESTDVLIGRIPVMVRSNICWMEECEKGDCEFDHGGYFLIKGAEKVFIAQ 893
            ++ + K V+  E+ +++IGRIPVMV+S++CW+   EKGDC+FDHGGYFLIKGAEKVFIAQ
Sbjct: 172  DKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQ 231

Query: 892  EQICLKRLWVSDKPCWTIAYRSEFRKRRVYVKIEAPEAEKKCPQLQKVINVHVLSCRIPL 713
            EQIC+KRLW+S+   WT++Y+SE ++ R+ V++      +     +K + V+ LS  IPL
Sbjct: 232  EQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPL 291

Query: 712  WILLFALGMSSDKEIVEXXXXXXXDNSLVNLLLSTINEADEVCEGFRRDGKALKYIENEI 533
            WIL FALG+ SDKE+++       D S+VN+  ++I++ADE CE FRR+ +AL Y++  +
Sbjct: 292  WILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLL 351

Query: 532  KNLKFPPEECLKDCIDKYLFPSLISHKQKAIFLGYMVKSLLLSSAGRRKCDNRDDFRNKX 353
            K  +FPP+E ++D I  YLFP L S + KA FLGYMVK LL +  G RKCDNRD FRNK 
Sbjct: 352  KKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKR 411

Query: 352  XXXXXXXXXXXXRIQIWHAQKRMVKAMQRDLYGDRSLRPIDHYIDASIITNGLSRAFSTG 173
                        ++ + HA +RM KA+QRDLYGDR + PI+HY+DASI+TNGL+RAFSTG
Sbjct: 412  FELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTG 471

Query: 172  AWAHPFNRTERTSGVVATLRRTNPLQTVADMRKTRQHVKYTGRILDARFPNPSHWGK 2
            AW HPF   ER SGVV  L R NPLQT+ D+RKTRQ V YTG++ DAR+P+PSHWG+
Sbjct: 472  AWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGR 528