BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00025762
         (2202 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1077   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1063   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1063   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1058   0.0  
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...  1057   0.0  
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...  1053   0.0  
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob...  1051   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1040   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1040   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1037   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1035   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1035   0.0  
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...  1030   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1030   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1025   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1025   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1024   0.0  
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...  1024   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1018   0.0  
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...  1016   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1077 bits (2785), Expect = 0.0
 Identities = 524/681 (76%), Positives = 591/681 (86%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+T +++PL+DKL  CGMEKL 
Sbjct: 521  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 580

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S   L  K+K+FL+GDWVGVC+D +SFV+ LR +RR+ E   QVEIKRD+QQ EVR+
Sbjct: 581  DDTST-KLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 639

Query: 363  FTDAGRILRPLLVVENLKRIKMVKGN-YNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENLK++K  KG+ + FQSLL               C TAWGIKYL 
Sbjct: 640  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 699

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
             G  +  P+ YTHCELD+SFLLG+SCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTTN  
Sbjct: 700  KGHDDP-PVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 758

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
            IRVDTLSHQLYYPQRPLF+TMISDCLG+P +  GH    P+PE+FNGQ AIVAVNVHLGY
Sbjct: 759  IRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGY 818

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EHIRSYK++V+N E ++ KR K +D V F K+QSKIGRVD
Sbjct: 819  NQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVD 877

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQ+GDIVIGRCAESG DHSIKLKHTERG VQKVV+SANDDG NFAVV
Sbjct: 878  SLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVV 937

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVR+PC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 938  SLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 997

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIACGG ++HATPF+T SVD I DQLHRAGFSRWG ER YNG  GEM+ S+IF
Sbjct: 998  LEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIF 1057

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGG+KFGEMERDCL+AHGAAAN
Sbjct: 1058 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAAN 1117

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD + MHIC +C NI+NVIQRSV GG K+RGP+CR+CESSE IVKVNVPYGA
Sbjct: 1118 LHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGA 1177

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF T+ C
Sbjct: 1178 KLLCQELFSMGISLKFETQLC 1198


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1063 bits (2750), Expect = 0.0
 Identities = 522/681 (76%), Positives = 585/681 (85%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DARFP+PSHWG++CFLSTPDGENCGLVKN+A TGLV+ N++EPL+DKL+  GMEK+ 
Sbjct: 525  KVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVP 584

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            ED S   L  KDK+FLNG+WVGVC+DS  FV  LR  RR  +   QVEIKRD+QQ+EVR+
Sbjct: 585  ED-SHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRI 643

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVV+NL +I+  KG N  FQSLL               C TAWGIK+L 
Sbjct: 644  FSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLL 703

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
             G   +  L YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHSQQAIGF TTN  
Sbjct: 704  SGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPN 763

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
            IRVDTLSHQLYYPQRPLF+T+ SDCLG+P    GH    PKPE +NGQNAIVAVNVHLGY
Sbjct: 764  IRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGY 823

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EHIRSYKADV+NKEL++ KR K  D V+F K+ SKIGRVD
Sbjct: 824  NQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVD 882

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQSGDIVIGRCAESG DHSIKLKHTERG VQKVVLS+ND+G NFAVV
Sbjct: 883  SLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVV 942

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPH+FP+RQTPGQL
Sbjct: 943  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQL 1002

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIACGGS+K+ATPF+T SV+ IT+QLHRAGFSRWG+ER YNG  GEM+ S+IF
Sbjct: 1003 LEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIF 1062

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+AN
Sbjct: 1063 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1122

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD SQMHIC KC N+ANVIQR+VPGG KIRGP+CR CES + IVKVNVPYGA
Sbjct: 1123 LHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGA 1182

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF T  C
Sbjct: 1183 KLLCQELFSMGISLKFETRLC 1203


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1063 bits (2750), Expect = 0.0
 Identities = 523/679 (77%), Positives = 588/679 (86%), Gaps = 4/679 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN+ E  LDKLL  GMEKL 
Sbjct: 341  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLV 400

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S + L  K K+FL+G+WVGVC DS+SFV  LR +RR  E   QVEIKRD+Q REVRV
Sbjct: 401  DDTSTL-LSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRV 459

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENL +IK  KG +Y+FQSLL               C+TAWGI YLF
Sbjct: 460  FSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLF 519

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
            M ++ +  + YTHCELD+SFLLG+S  IIPFANHDHARRVLYQSEKHSQQA+GF+TTN  
Sbjct: 520  MENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPN 579

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
            IRVDT +HQLYYPQRPLF+TM+SDCLG+P +P GH    P+ E+FNGQ AIVAVNVHLGY
Sbjct: 580  IRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGY 639

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EHIRSYKADV+NKE +  K+ K +D V+F KVQSKIGRVD
Sbjct: 640  NQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESV-GKKPKFEDSVNFGKVQSKIGRVD 698

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQ+GDIV+GRCAESG DHSIKLKHTERG VQKVVLSAND+G NFAVV
Sbjct: 699  SLDDDGFPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVV 758

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVR+PC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIV+NPHAFP+RQTPGQL
Sbjct: 759  SLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQL 818

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIACGG  K+ATPF+T SVD +TDQLHRAGFSRWGSER YNG  GEM+HS++F
Sbjct: 819  LEAALGKGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVF 878

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAAN
Sbjct: 879  MGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 938

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD SQMHIC KCNNIANVIQR+VPGG KIRGP+CRFCES E IV+VNVPYGA
Sbjct: 939  LHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGA 998

Query: 1971 KLLCQELFSMGICVKFVTE 2027
            KLL QELFSMGI +KF TE
Sbjct: 999  KLLAQELFSMGITMKFDTE 1017


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1058 bits (2737), Expect = 0.0
 Identities = 518/678 (76%), Positives = 583/678 (85%), Gaps = 1/678 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+T +++PL+DKL  CGMEKL 
Sbjct: 557  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 616

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S   L  K+K+FL+GDWVGVC+D +SFV+ LR +RR+ E   QVEIKRD+QQ EVR+
Sbjct: 617  DDTST-KLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 675

Query: 363  FTDAGRILRPLLVVENLKRIKMVKGN-YNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENLK++K  KG+ + FQSLL               C TAWGIKYL 
Sbjct: 676  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 735

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
             G  +  P+ YTHCELD+SFLLG+SCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTTN  
Sbjct: 736  KGHDDP-PVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPN 794

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGHFPKPEFFNGQNAIVAVNVHLGYNQE 899
            IRVDTLSHQLYYPQRPLF+TMISD            P+PE+FNGQ AIVAVNVHLGYNQE
Sbjct: 795  IRVDTLSHQLYYPQRPLFRTMISD-----------LPRPEYFNGQIAIVAVNVHLGYNQE 843

Query: 900  DSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDSLD 1079
            DSLVMNRASLERGMFR+EHIRSYK++V+N E ++ KR K +D V F K+QSKIGRVDSLD
Sbjct: 844  DSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVDSLD 902

Query: 1080 DDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVSLR 1259
            DDGFPFIGANLQ+GDIVIGRCAESG DHSIKLKHTERG VQKVV+SANDDG NFAVVSLR
Sbjct: 903  DDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLR 962

Query: 1260 QVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 1439
            QVR+PC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 963  QVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1022

Query: 1440 AFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFIGP 1619
            A GKGIACGG ++HATPF+T SVD I DQLHRAGFSRWG ER YNG  GEM+ S+IF+GP
Sbjct: 1023 ALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGP 1082

Query: 1620 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANLHE 1799
            TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGG+KFGEMERDCL+AHGAAANLHE
Sbjct: 1083 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHE 1142

Query: 1800 RLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAKLL 1979
            RLFTLSD + MHIC +C NI+NVIQRSV GG K+RGP+CR+CESSE IVKVNVPYGAKLL
Sbjct: 1143 RLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLL 1202

Query: 1980 CQELFSMGICVKFVTEPC 2033
            CQELFSMGI +KF T+ C
Sbjct: 1203 CQELFSMGISLKFETQLC 1220


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1057 bits (2734), Expect = 0.0
 Identities = 512/681 (75%), Positives = 588/681 (86%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN++E ++DKL   GME+L 
Sbjct: 506  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEELV 565

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
             D +  SL  KDK+FLNG+WVGVC+DSLSF   +R +RR+ EF  QVEIKRD+ + EVR+
Sbjct: 566  ND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRI 624

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+D GRILRPLLVV+NL RIK  KG NY FQ+LL               C+TAW IKYL 
Sbjct: 625  FSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLL 684

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
               + + P+ YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHSQQAIGFSTTN  
Sbjct: 685  TDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPN 744

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
            IRVDTLSHQLYYPQRPLF+TM SDCLG+  HP G     PKPE +NGQNAIVAVNVHLGY
Sbjct: 745  IRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGY 804

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNR+SLERGMFR+EH+RSYKA+V+NKE I+ KR K +D V+F K+QSKIGRVD
Sbjct: 805  NQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKE-IQDKRRKSEDIVNFGKIQSKIGRVD 863

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFP++GANLQ GDIVIGRCAESG DHSIKLKHTERG VQKVVLS+NDDG N+AVV
Sbjct: 864  SLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVV 923

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 924  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQL 983

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIACGGS+K+ATPF+T SVD IT+QLHRAGFSRWG+ER YNG  GEM+ S+IF
Sbjct: 984  LEAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIF 1043

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKR+GG+KFGEMERDCL+AHGA+AN
Sbjct: 1044 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASAN 1103

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERL TLSD SQMH+C  C N+ANVI+R+VPGG KIRGP+CR C+S ++IV+VNVPYGA
Sbjct: 1104 LHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNVPYGA 1163

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF T+ C
Sbjct: 1164 KLLCQELFSMGINLKFETQLC 1184


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1053 bits (2722), Expect = 0.0
 Identities = 508/678 (74%), Positives = 584/678 (86%), Gaps = 1/678 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN++E L+ +LL CGMEKL 
Sbjct: 525  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCGMEKLV 584

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D +  SL+ KDK+FLNGDWVGVC+DSLSFV+ LR  RR  +   QVEIKRD  Q EVR+
Sbjct: 585  DD-TFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGEVRI 643

Query: 363  FTDAGRILRPLLVVENLKRIKMVKGNYN-FQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENL ++K  KG  + FQ  L               C TAWGIKYLF
Sbjct: 644  FSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIKYLF 703

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
            M DK +    +THCELD+SFLLG+SCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTTN  
Sbjct: 704  MEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTTNPN 763

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGHFPKPEFFNGQNAIVAVNVHLGYNQE 899
            +RVDTLSHQL+YPQRPLFQTM SDCLG+P   N   PKPE++NGQNAIVAVNVHLG+NQE
Sbjct: 764  LRVDTLSHQLHYPQRPLFQTMTSDCLGKPGRHNRIVPKPEYYNGQNAIVAVNVHLGFNQE 823

Query: 900  DSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDSLD 1079
            DS+VMNRASLERGMFR+EHIRSYKA+V+NKE ++ KR K  D V+F K+QSK GRVDSLD
Sbjct: 824  DSIVMNRASLERGMFRSEHIRSYKAEVDNKESLD-KRRKPDDCVNFGKMQSKFGRVDSLD 882

Query: 1080 DDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVSLR 1259
            DDGFP++GANLQSGDI+IGRC+ESG DHSIKLKHTERG VQKV+LS+NDDG NFAVVSLR
Sbjct: 883  DDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNFAVVSLR 942

Query: 1260 QVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 1439
            QVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QG+VPDIVINPHAFP+RQTPGQLLEA
Sbjct: 943  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEA 1002

Query: 1440 AFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFIGP 1619
            A GKGIACGGS ++ATPF+T SVDDITDQLH AGFSRWG+ER YNG  G M+ S+IF+GP
Sbjct: 1003 ALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVYNGATGAMVRSLIFMGP 1062

Query: 1620 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANLHE 1799
            TFYQRLIHM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+ANLHE
Sbjct: 1063 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1122

Query: 1800 RLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAKLL 1979
            RLFTLSD SQMH+C KC N+A VI R+V GG KIRGPHCR C+S++++V+VNVPYGAKLL
Sbjct: 1123 RLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDSADDLVRVNVPYGAKLL 1182

Query: 1980 CQELFSMGICVKFVTEPC 2033
            CQELFSMGI +KF T  C
Sbjct: 1183 CQELFSMGISLKFETRFC 1200


>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
            gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
            isoform 2 [Theobroma cacao]
          Length = 961

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 512/685 (74%), Positives = 588/685 (85%), Gaps = 8/685 (1%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN++E ++DKL   GME+L 
Sbjct: 279  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEELV 338

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
             D +  SL  KDK+FLNG+WVGVC+DSLSF   +R +RR+ EF  QVEIKRD+ + EVR+
Sbjct: 339  ND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRI 397

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+D GRILRPLLVV+NL RIK  KG NY FQ+LL               C+TAW IKYL 
Sbjct: 398  FSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLL 457

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
               + + P+ YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHSQQAIGFSTTN  
Sbjct: 458  TDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPN 517

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
            IRVDTLSHQLYYPQRPLF+TM SDCLG+  HP G     PKPE +NGQNAIVAVNVHLGY
Sbjct: 518  IRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGY 577

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNR+SLERGMFR+EH+RSYKA+V+NKE I+ KR K +D V+F K+QSKIGRVD
Sbjct: 578  NQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKE-IQDKRRKSEDIVNFGKIQSKIGRVD 636

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFP++GANLQ GDIVIGRCAESG DHSIKLKHTERG VQKVVLS+NDDG N+AVV
Sbjct: 637  SLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVV 696

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 697  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQL 756

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQL----HRAGFSRWGSERFYNGHNGEMMH 1598
            LEAA GKGIACGGS+K+ATPF+T SVD IT+QL    HRAGFSRWG+ER YNG  GEM+ 
Sbjct: 757  LEAALGKGIACGGSMKYATPFSTISVDAITEQLHSICHRAGFSRWGNERVYNGRTGEMVR 816

Query: 1599 SMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHG 1778
            S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKR+GG+KFGEMERDCL+AHG
Sbjct: 817  SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHG 876

Query: 1779 AAANLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNV 1958
            A+ANLHERL TLSD SQMH+C  C N+ANVI+R+VPGG KIRGP+CR C+S ++IV+VNV
Sbjct: 877  ASANLHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNV 936

Query: 1959 PYGAKLLCQELFSMGICVKFVTEPC 2033
            PYGAKLLCQELFSMGI +KF T+ C
Sbjct: 937  PYGAKLLCQELFSMGINLKFETQLC 961


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1040 bits (2690), Expect = 0.0
 Identities = 510/675 (75%), Positives = 578/675 (85%), Gaps = 1/675 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWG++CFLSTPDGENCGLVKN+A TG+V+TN+ E L+DKL   GMEKL 
Sbjct: 514  KVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLV 573

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D +   L  K K+FLNG+WVGVC+DS  FV  LR+ RR  E   QVEIKRD+QQREVR+
Sbjct: 574  DD-TYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRI 632

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENL +IK  KG NY F SLL               C TAWGIK+L 
Sbjct: 633  FSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLL 692

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
               + + P+ Y+HCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHSQQAIGFSTTN  
Sbjct: 693  ADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPN 752

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGHFPKPEFFNGQNAIVAVNVHLGYNQE 899
            IRVDTLSHQL+YPQRPLF+TMISDCL          PKPE FNGQNAIVAVNVHLGYNQE
Sbjct: 753  IRVDTLSHQLHYPQRPLFRTMISDCLV--------LPKPELFNGQNAIVAVNVHLGYNQE 804

Query: 900  DSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDSLD 1079
            DSLVMNRASLERGMFR+EHIRSYKA+V+NKEL + KR K +D + F K+QSKIGRVDSLD
Sbjct: 805  DSLVMNRASLERGMFRSEHIRSYKAEVDNKELTD-KRRKSEDSITFGKIQSKIGRVDSLD 863

Query: 1080 DDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVSLR 1259
            DDGFPFIGAN+QSGDIVIG+CAESG DHS+KLKHTERG VQKVVLS+ND+G NFAVVSLR
Sbjct: 864  DDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 923

Query: 1260 QVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 1439
            QVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QG+VPDIVINPHAFP+RQTPGQLLEA
Sbjct: 924  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEA 983

Query: 1440 AFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFIGP 1619
            A GKGIACGGS ++ATPF+T SVDDI DQLHRA FSRWG+ER YNG  GEM+ S+IF+GP
Sbjct: 984  ALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGP 1043

Query: 1620 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANLHE 1799
            TFYQRL+HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+ANLHE
Sbjct: 1044 TFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1103

Query: 1800 RLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAKLL 1979
            RLFTLSD S+MHIC KC N+ANVIQR VPGG KIRGP+CR CES +++VKV+VPYGAKLL
Sbjct: 1104 RLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLL 1163

Query: 1980 CQELFSMGICVKFVT 2024
            CQELFSMGI +KF T
Sbjct: 1164 CQELFSMGISLKFDT 1178


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 509/685 (74%), Positives = 580/685 (84%), Gaps = 8/685 (1%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLV+T +++PLL+ L +CGM+KL 
Sbjct: 538  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLV 597

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S  SL  K K+ L+GDWVGVC+DS  FV  LR +RR  E   QVE+KRD+QQ EVR+
Sbjct: 598  DD-SATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRI 656

Query: 363  FTDAGRILRPLLVVENLKRIKMVK-----GNYNFQSLLXXXXXXXXXXXXXXXCKTAWGI 527
            F+DAGRI+RPLLVV NLK IK +K     G+Y FQ+LL               C+TAWG+
Sbjct: 657  FSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGV 716

Query: 528  KYLFMGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFST 707
            +YL   DKE  P++YTHCELD+SFLLG+SCG+IPFANHDHARRVLYQSEKHSQQAIGFST
Sbjct: 717  EYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFST 776

Query: 708  TNSKIRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNV 878
             N   RVDT +HQLYYPQRPLF TM+SD LG+PK   H  G   +PE++NGQ AIVAVNV
Sbjct: 777  VNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNV 836

Query: 879  HLGYNQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKI 1058
            HLGYNQEDS+VMNRASLERGMFR+EH+RSYKA+V+NKE +  K+ K++D V+F K QSKI
Sbjct: 837  HLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAM-GKKSKVEDSVNFGKTQSKI 895

Query: 1059 GRVDSLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTN 1238
            GRVDSLDDDGFPFIGANLQSGDI+IG+ AESG DHS+K+KHTERG VQKV+LSANDDG N
Sbjct: 896  GRVDSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKN 955

Query: 1239 FAVVSLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQT 1418
            FAVVSLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQT
Sbjct: 956  FAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQT 1015

Query: 1419 PGQLLEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMH 1598
            PGQLLEAA GKGIA GG  K+ATPF+  SVD I  QLH  GFSRWGSER YNG  GEM+H
Sbjct: 1016 PGQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVH 1075

Query: 1599 SMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHG 1778
            S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHG
Sbjct: 1076 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1135

Query: 1779 AAANLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNV 1958
            AAANLHERLFTLSD SQMHICGKC N+ANVIQRS PGG KIRGP CRFCES E+IVKV+V
Sbjct: 1136 AAANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDV 1194

Query: 1959 PYGAKLLCQELFSMGICVKFVTEPC 2033
            PYGAKLLCQELFSMGI +KF TE C
Sbjct: 1195 PYGAKLLCQELFSMGISLKFDTEIC 1219


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 506/685 (73%), Positives = 581/685 (84%), Gaps = 8/685 (1%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+  TGLV+T+++EP+ ++L   GMEKL 
Sbjct: 516  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLA 575

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S  SL  K K+F++GDW+GVCKDSLSFV  LR +RR  E  +QVEIKRD+ Q EVR+
Sbjct: 576  DDASY-SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 634

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F DAGRILRPLLVVEN+ +IK ++G NY FQ+LL               C TAWGIKYL 
Sbjct: 635  FMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 694

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
               +++ P+ +THCELD+SFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIGF TTN  
Sbjct: 695  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 754

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGHF-PKPEFFNGQNAIVAVNVHLGYNQ 896
            IRVDTLSHQL+YPQRPLF+TMISDCLG+P + + H  P+PE +NGQNAIVAVNVHLGYNQ
Sbjct: 755  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 814

Query: 897  EDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDSL 1076
            EDSLVMNRASLERGMFR+EHIRSYKA+V+NKE+ + KR    D V+F K+QSKIGRVDSL
Sbjct: 815  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM-QVKRRSSDDMVNFGKIQSKIGRVDSL 873

Query: 1077 DDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVSL 1256
            DDDGFPFIGANLQ GDIVIG+ A+SG DHSIKLKHTERG VQKVVLS+NDDG NF+VVSL
Sbjct: 874  DDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 933

Query: 1257 RQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLE 1436
            RQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLE
Sbjct: 934  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 993

Query: 1437 AAFGKGIA------CGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMH 1598
            AA GKGIA      C G  ++ATPF TPSVD IT+QLHRAGFS+WG+ER Y+G  GEM+ 
Sbjct: 994  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1053

Query: 1599 SMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHG 1778
            S+IFIGPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHG
Sbjct: 1054 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1113

Query: 1779 AAANLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNV 1958
            AAANLHERLFTLSD  QMHIC KC N+ANVIQR V GG K+RGP+CR C+S ++IVK NV
Sbjct: 1114 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1173

Query: 1959 PYGAKLLCQELFSMGICVKFVTEPC 2033
            PYGAKLLCQELFSMGI +KF TE C
Sbjct: 1174 PYGAKLLCQELFSMGITLKFDTEFC 1198


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1035 bits (2677), Expect = 0.0
 Identities = 506/681 (74%), Positives = 582/681 (85%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLV+T +++P L+ L +CGM+KL 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D +  SL  K K+ L+G+WVGVC+DS  FV  LR +RR  E   QVE+KRD+ Q EVR+
Sbjct: 600  DDCAT-SLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+D+GRILRPLLVV NLK+IK +KG +Y FQSLL               C+TAWG++Y+ 
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
              DKE  P  YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQSEKHSQQAIGFST N  
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNVHLGY 890
             RVDT +HQLYYPQRPLF+TM++D LG+PK   +  G  P+PE+FNGQ AIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EH+RSYKA+V+NKE + +K+LK++D V+F K QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQSGDI+IG+ AESG DHS+KLKHTERG VQKV+LSAND+G NFAVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIA GG  K+ATPF+T SVD I +QL   GF+RWG+ER YNG  GEM+HS+IF
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIF 1077

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAAN
Sbjct: 1078 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1137

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD SQMHICGKC N+ANVIQR+V GG K+RGP CRFCES E+IVKVNVPYGA
Sbjct: 1138 LHERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGA 1196

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF TE C
Sbjct: 1197 KLLCQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1035 bits (2675), Expect = 0.0
 Identities = 506/681 (74%), Positives = 581/681 (85%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLV+T +++P L+ L +CGM+KL 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D S  SL  K K+ L+G+WVGVC+DS  FV  LR +RR  E   QVE+KRD+ Q EVR+
Sbjct: 600  DDCST-SLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+D GRILRPLLVV NLK+IK +KG +Y FQSLL               C+TAWG++Y+ 
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
              DKE  P  YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQSEKHSQQAIGFST N  
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNVHLGY 890
             RVDT +HQLYYPQRPLF+TM++D LG+PK   +  G  P+PE+FNGQ AIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EH+RSYKA+V+NKE + +K+LK++D V+F K QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQSGDI+IG+ +ESG DHS+KLKHTERG VQKV+LSAND+G NFAVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIA GG  K+ATPF+T SVD I +QL   GF+RWG+ER YNG  GEM+HS+IF
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIF 1077

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAAN
Sbjct: 1078 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1137

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD SQMHICGKC N+ANVIQR+V GG K+RGP CRFCES E+IVKVNVPYGA
Sbjct: 1138 LHERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGA 1196

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF TE C
Sbjct: 1197 KLLCQELFSMGISLKFDTEIC 1217


>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score = 1030 bits (2664), Expect = 0.0
 Identities = 507/682 (74%), Positives = 576/682 (84%), Gaps = 5/682 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEP--LLDKLLQCGMEK 176
            R+ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLV+TN++E   LL +   CGMEK
Sbjct: 142  RVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTNVLEQESLLRQFHVCGMEK 201

Query: 177  LREDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREV 356
            L +D S + L+ K K FL+G+WVG+CKDS SFV  LR +RR  E   QVEIKRD + REV
Sbjct: 202  LVDDTSSV-LEGKHKAFLDGEWVGMCKDSKSFVAKLRRKRRMMEMPYQVEIKRDVRHREV 260

Query: 357  RVFTDAGRILRPLLVVENLKRIKMVKGNYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYL 536
            R+F DAGRILRPLL+V+ LK+IK +KG ++FQSLL               C+TAWGIKYL
Sbjct: 261  RIFADAGRILRPLLLVQKLKKIKELKGEFSFQSLLDNGIVEFIGAEEEEDCRTAWGIKYL 320

Query: 537  FMGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNS 716
            F  DKE+  + YTHCELD SFLLG+SCG+IPFANHDHARRVLYQSEKHSQQAIGFSTTN 
Sbjct: 321  FSADKEKPLVKYTHCELDCSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTTNP 380

Query: 717  KIRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNVHLG 887
             IRVDT SH LYYPQRP+F TM+SD LG+ K   H  G  P PEFFNGQ AIVAVNVHLG
Sbjct: 381  SIRVDTNSHNLYYPQRPIFGTMLSDSLGKSKYSSHHKGMLPHPEFFNGQCAIVAVNVHLG 440

Query: 888  YNQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRV 1067
            YNQEDS+VMNRAS+ERGMFRTEH+RSYKA+V+N +    K+LK  D VDF K +SKIGRV
Sbjct: 441  YNQEDSIVMNRASMERGMFRTEHVRSYKAEVDNSDA-PGKKLKPDDLVDFGKTESKIGRV 499

Query: 1068 DSLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAV 1247
            DSLDDDGFPFIGANLQ+GDIVIG+ A SG DHSIKLKHTERG VQKVVLS+NDDG NF V
Sbjct: 500  DSLDDDGFPFIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDDGKNFGV 559

Query: 1248 VSLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 1427
            VSLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQ
Sbjct: 560  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKEGIVPDIVINPHAFPSRQTPGQ 619

Query: 1428 LLEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMI 1607
            LLEAA GKGIA GG++K+ATPF+TPSVDDIT QLHR GFSRWG ER Y+G  GE + S+I
Sbjct: 620  LLEAALGKGIALGGALKYATPFSTPSVDDITAQLHRLGFSRWGDERVYDGRTGEKVESLI 679

Query: 1608 FIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAA 1787
            F+GPTFYQRL HMAEDK+KFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAA
Sbjct: 680  FMGPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 739

Query: 1788 NLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYG 1967
            NLHERLFTLSD SQMH+C KC N+ANVIQRSV GG KIRGP+CRFC+S E++V++NVPYG
Sbjct: 740  NLHERLFTLSDSSQMHVCRKCQNMANVIQRSVFGGRKIRGPYCRFCDSVEDVVRLNVPYG 799

Query: 1968 AKLLCQELFSMGICVKFVTEPC 2033
            AKLLCQELFSMGI +KF TE C
Sbjct: 800  AKLLCQELFSMGISLKFDTELC 821


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1030 bits (2663), Expect = 0.0
 Identities = 503/681 (73%), Positives = 578/681 (84%), Gaps = 4/681 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWG++CFLSTPDGENCGL+KN++ TGLV+ N  + +   L +CGME L 
Sbjct: 522  KVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLV 581

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            ++ S  S   K +IFL+G+WVGVC+DSLSFV N+R +RR   F  QVE+KRD+Q +EVR+
Sbjct: 582  DNTST-SFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRI 640

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-NYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+DAGRILRPLLVVENL RI   KG NY FQSLL               C+ AW IK+L 
Sbjct: 641  FSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLM 700

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
               +++    Y+HCELD+SFLLG+SCG++PFANHDHARR L+QS+KHS QAIGFS TNS 
Sbjct: 701  ---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSN 757

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGY 890
             RVDTLSHQL+YPQRPLF+TM +DCLG P + + H    PKPEF+NGQNAIVAVNVHLGY
Sbjct: 758  FRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGY 817

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDSLVMNRASLERGMFR+EHIRSYKA+V+NKE  E KR K  D ++F K QSKIGRVD
Sbjct: 818  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIGRVD 876

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFP+IGANLQSGDIVIGRCAESG DHSIKLKHTE+G VQKVVLS+NDDG N+AVV
Sbjct: 877  SLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVV 936

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 937  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 996

Query: 1431 LEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIF 1610
            LEAA GKGIA GGS+K+ATPF+TPSVD ITDQLHRAGFSRWGSER YNG  GEMM S+IF
Sbjct: 997  LEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIF 1056

Query: 1611 IGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAAN 1790
            +GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+AN
Sbjct: 1057 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1116

Query: 1791 LHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGA 1970
            LHERLFTLSD SQMH+C KC N+A+VIQRSV GG K+RGP+CR CES ++IV+VNVPYGA
Sbjct: 1117 LHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVPYGA 1176

Query: 1971 KLLCQELFSMGICVKFVTEPC 2033
            KLLCQELFSMGI +KF T+ C
Sbjct: 1177 KLLCQELFSMGINLKFETQLC 1197


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 507/683 (74%), Positives = 574/683 (84%), Gaps = 6/683 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+AATGLV+ N+ E L+  L   GME L 
Sbjct: 517  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENLA 576

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
             D +   L  K K+FLNGDW+GVC DSL+FV  LR +RR  E   QVEIKRD+Q  EVR+
Sbjct: 577  ND-TYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRI 635

Query: 363  FTDAGRILRPLLVVENLKRIKMVK-GNYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
            F+D+GRILRPLLVVENL RIK  K G Y F SLL               C+TAWGIKYLF
Sbjct: 636  FSDSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLF 695

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
            M D  + P++YTHCELD+SFLL +SCGIIPFANHDHARRVLYQ++KHSQQAIGF TTN  
Sbjct: 696  MEDGGK-PVNYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPD 754

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKHP---NGHFPKPEFFNGQNAIVAVNVHLGY 890
            IRVDTLSHQL+YPQRPLFQTM SDCLG+  +    NG  PK E FNGQNAIVAVNVHLGY
Sbjct: 755  IRVDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGY 814

Query: 891  NQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVD 1070
            NQEDS+VMNRASLERGMFR+EHIRSYKADV+NKE  + KR K  D  +F K+ SK GRVD
Sbjct: 815  NQEDSIVMNRASLERGMFRSEHIRSYKADVDNKESTD-KRRKPDDCFNFAKIPSKNGRVD 873

Query: 1071 SLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVV 1250
            SLDDDGFPFIGANLQSGDIVIGRCAESG DHSIKLKHTE+G VQKVVLS+NDDG NFAVV
Sbjct: 874  SLDDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVV 933

Query: 1251 SLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1430
            SLRQVR P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 934  SLRQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 993

Query: 1431 LEAAFGKGIAC--GGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSM 1604
            LEAA GKGIA   G  ++HATPF+TPSVD IT+QLH+AGFSRWG+ER YNG  GEM+ S+
Sbjct: 994  LEAALGKGIALAKGIPLRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSL 1053

Query: 1605 IFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAA 1784
            IF+GPTFYQRL+HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGGVKFGEMERDCLLAHGA+
Sbjct: 1054 IFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAS 1113

Query: 1785 ANLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPY 1964
            ANLHERLFTLSD SQMHIC +C+N+AN+IQRS+ GG K+RGP+CR C+S+++IV+VNVPY
Sbjct: 1114 ANLHERLFTLSDSSQMHICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPY 1173

Query: 1965 GAKLLCQELFSMGICVKFVTEPC 2033
            GAKLLCQELF+MGI +KF T  C
Sbjct: 1174 GAKLLCQELFTMGINLKFETRIC 1196


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 501/685 (73%), Positives = 573/685 (83%), Gaps = 8/685 (1%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+PNPSHWGK+CFLSTPDGENCGLVKN+A+ GLV+T ++ PLL+ L +CGM+KL 
Sbjct: 538  KVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQKLV 597

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D +  SL  K K+ L+GDWVGVC+DS  FV  LR +RR  E   QVE+KRD+QQ EVR+
Sbjct: 598  DDCAT-SLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRI 656

Query: 363  FTDAGRILRPLLVVENLKRIKMVKG-----NYNFQSLLXXXXXXXXXXXXXXXCKTAWGI 527
            F+DAGRI+RPLLVV NLK IK + G     +Y FQ+LL               C+TAWG+
Sbjct: 657  FSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGV 716

Query: 528  KYLFMGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFST 707
            +YL   DKE  P++YTHCELD+SFLLG+SCG+IPFANHDHARRVLYQSEKHSQQAIGFST
Sbjct: 717  EYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFST 776

Query: 708  TNSKIRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNV 878
             N  IRVDT +HQLYYPQRPLF TM+SD LG+PK   H  G   +PE++NGQ AIVAVNV
Sbjct: 777  VNPNIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNV 836

Query: 879  HLGYNQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKI 1058
            HLGYNQEDS+VMNRASLERGMFR+EH+RSYKA+V+N E    K+ K +D V+F K QSKI
Sbjct: 837  HLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEAT-GKKSKAEDSVNFGKTQSKI 895

Query: 1059 GRVDSLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTN 1238
            GRVD LDDDG P+IGANLQSGDI+IG+ AESG DHS+K+KHTE+G VQKV+LSAND+G N
Sbjct: 896  GRVDCLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKN 955

Query: 1239 FAVVSLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQT 1418
            FAVVSLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQT
Sbjct: 956  FAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQT 1015

Query: 1419 PGQLLEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMH 1598
            PGQLLEAA GKGIA GG  K+ATPF+  SVD I  QLH  GFSRWG+ER YNG  GEM+H
Sbjct: 1016 PGQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVH 1075

Query: 1599 SMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHG 1778
            S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHG
Sbjct: 1076 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1135

Query: 1779 AAANLHERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNV 1958
            AAANLHERLFTLSD SQMHICGKC N+ANVIQR VPGG K+RGP CRFCES E+IVKV V
Sbjct: 1136 AAANLHERLFTLSDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGV 1194

Query: 1959 PYGAKLLCQELFSMGICVKFVTEPC 2033
            PYGAKLLCQELFSMGI +KF TE C
Sbjct: 1195 PYGAKLLCQELFSMGISLKFDTEIC 1219


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1024 bits (2648), Expect = 0.0
 Identities = 505/680 (74%), Positives = 576/680 (84%), Gaps = 3/680 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKNMA TGLV+TN+ E +L +L  CGME+L 
Sbjct: 523  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEELV 582

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D + + L  KDK+FLNGDWVGVC DS SFV  LRNRRR  E   QVEIKRD  Q EVR+
Sbjct: 583  DDTTAV-LGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRI 641

Query: 363  FTDAGRILRPLLVVENLKRIKMVKGN-YNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
             +DAGRILRPLLVV NL +IK  K +  +FQSLL               CKTAWG+ YLF
Sbjct: 642  LSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYLF 701

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
             G + +  + YTHCELD+SFLLG+SC ++PFANHDHARRVLYQS+KHS QAIGFSTTN  
Sbjct: 702  -GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPD 760

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKH--PNGHFPKPEFFNGQNAIVAVNVHLGYN 893
            IRVD LSHQL+YPQ+PLFQTM SDCLG+P +  P+   PK EF+NGQNAIVAVNVHLGYN
Sbjct: 761  IRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHLGYN 820

Query: 894  QEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDS 1073
            QEDSLVMNRASL+RGMFR+EHIRSYKA+ ENKE  E KR K +D V+F K+QSKIGRVDS
Sbjct: 821  QEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKR-KPEDIVNFGKIQSKIGRVDS 879

Query: 1074 LDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVS 1253
            LDDDGFPF+GANLQ GDI+IGRCA+SG DHSIKLKHTERG VQKVVLS+ND+G NFAVVS
Sbjct: 880  LDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVVS 939

Query: 1254 LRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLL 1433
            LRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLL
Sbjct: 940  LRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLL 999

Query: 1434 EAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFI 1613
            EAA GKGIAC GS+++ATPF+T SV+ ITDQLHRAGFSRWG+ER YNG  GEM+ S+IF+
Sbjct: 1000 EAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFM 1059

Query: 1614 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANL 1793
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+ANL
Sbjct: 1060 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL 1119

Query: 1794 HERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAK 1973
            +ERLFTLSD SQ+HIC KC N+ANVI R V GG KIRGP+CRFCES+++IV  +VPYGAK
Sbjct: 1120 YERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAHVPYGAK 1179

Query: 1974 LLCQELFSMGICVKFVTEPC 2033
            LLCQELFSMGI +KF TE C
Sbjct: 1180 LLCQELFSMGINLKFETELC 1199


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 501/684 (73%), Positives = 576/684 (84%), Gaps = 7/684 (1%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEP--LLDKLLQCGMEK 176
            R+ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLV+TNL+    LL K  QCGMEK
Sbjct: 529  RVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTNLLAQGNLLKKFQQCGMEK 588

Query: 177  LREDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREV 356
            + +D S + L  K K+FL+GDW+G+CKDS SFV  LR +RR  E   Q+EIKRDQ   EV
Sbjct: 589  MVDDTSNL-LGGKHKVFLDGDWIGICKDSSSFVSKLRRKRRRMEIPHQMEIKRDQHNGEV 647

Query: 357  RVFTDAGRILRPLLVVENLKRIKMVKGNYNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYL 536
            R+F D+GRILRPLLVV+NLK+IK +KGN++FQSLL               C+TAWG++YL
Sbjct: 648  RIFNDSGRILRPLLVVQNLKKIKDLKGNFSFQSLLDNGIIELIGAEEEEDCQTAWGVRYL 707

Query: 537  FMGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNS 716
            F  + E  P+ YTHCELD SFLLG+SCGI+PF NHDHARRVLYQSEKHSQQAIG+STTNS
Sbjct: 708  FTAELENPPVKYTHCELDSSFLLGLSCGIVPFTNHDHARRVLYQSEKHSQQAIGYSTTNS 767

Query: 717  KIRVDTLSHQLYYPQRPLFQTMISDCLGRPK---HPNGHFPKPEFFNGQNAIVAVNVHLG 887
             IRVDT SH LYYPQRPLF+T++SD LGR     H  G  P+PEF+NGQ AIVA+NVHLG
Sbjct: 768  IIRVDTNSHSLYYPQRPLFRTVLSDSLGRSTFSDHYKGMIPRPEFYNGQCAIVAINVHLG 827

Query: 888  YNQEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRV 1067
            YNQEDSLVMNR+SLERGMFRTEH+RS+KADVEN E +  K++KM + V F K+QSKIGRV
Sbjct: 828  YNQEDSLVMNRSSLERGMFRTEHVRSFKADVENSEAVGGKKVKMDEMVSFGKMQSKIGRV 887

Query: 1068 DSLDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAV 1247
            DSL+DDGFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTE+G V KVVLSAND+G NFAV
Sbjct: 888  DSLEDDGFPYIGANLQTGDIVIGKHAATGVDHSIKLKHTEKGMVHKVVLSANDEGKNFAV 947

Query: 1248 VSLRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQ 1427
            VSLRQVRSPC+GDKFSSMHGQKGV+G LESQENFPF+ QGIVPDIVINPHAFP+RQTPGQ
Sbjct: 948  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFSQQGIVPDIVINPHAFPSRQTPGQ 1007

Query: 1428 LLEAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMI 1607
            LLEAA GKGIA GG +K+ATPF++PSV+DIT QLHR GFSRWG ER Y+G  GE ++S+I
Sbjct: 1008 LLEAALGKGIALGGGLKYATPFSSPSVEDITAQLHRLGFSRWGGERVYDGRTGEKVNSLI 1067

Query: 1608 FIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAA 1787
            F+GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAA
Sbjct: 1068 FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1127

Query: 1788 NLHERLFTLSDFSQMHICGKCNNIANVIQR--SVPGGSKIRGPHCRFCESSENIVKVNVP 1961
            NLHERLFTLSD SQMHIC KC N+ANVIQR  S  GG KIRGP CR CES E++V+VNVP
Sbjct: 1128 NLHERLFTLSDSSQMHICRKCKNMANVIQRPGSGGGGRKIRGPFCRVCESVEDVVRVNVP 1187

Query: 1962 YGAKLLCQELFSMGICVKFVTEPC 2033
            YGAKLLCQELFSMGI +KF TE C
Sbjct: 1188 YGAKLLCQELFSMGISLKFDTELC 1211


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 497/678 (73%), Positives = 575/678 (84%), Gaps = 4/678 (0%)
 Frame = +3

Query: 12   DARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLREDP 191
            DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A T LV+ N+ EP+L KL +CG+E+L +D 
Sbjct: 527  DARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIEELVDD- 585

Query: 192  SLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRVFTD 371
            +  SL  K K+FLNGDWVG+C DS  FV  LR  RR+ +   QVEIKRD+ + EVR+F+D
Sbjct: 586  TYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIFSD 645

Query: 372  AGRILRPLLVVENLKRIKMVKGN-YNFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLFMGD 548
            AGRILRPLLVV+ LK+IK  KG  + FQ  L               C+TAW IKYLFM +
Sbjct: 646  AGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFMEE 705

Query: 549  KEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSKIRV 728
            +  + + YTHCELD+SFLLG+SCGIIPFANHDHARRVLYQS+KHSQQAIG+STTN  +RV
Sbjct: 706  QGSV-VKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNLRV 764

Query: 729  DTLSHQLYYPQRPLFQTMISDCLGRPKHPNGH---FPKPEFFNGQNAIVAVNVHLGYNQE 899
            DTLSH L+YPQRPLF+TMI+D LG+P +P GH    PKPE+FNGQNAIVAVNVHLGYNQE
Sbjct: 765  DTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYNQE 824

Query: 900  DSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDSLD 1079
            DS+VMNRASLERGMFR+EHIRSYKA+VENK  +E KR K  + V+F K+QSK GRVD+LD
Sbjct: 825  DSIVMNRASLERGMFRSEHIRSYKAEVENKLSLE-KRRKPDECVNFGKIQSKFGRVDNLD 883

Query: 1080 DDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVSLR 1259
            DDGFP +GA+LQSGDI+IGRC+ESGTDHSIKLKHTERG VQKVVLS+ND G NFAVVSLR
Sbjct: 884  DDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVVSLR 943

Query: 1260 QVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 1439
            QVRSP +GDKFSSMHGQKGV+G LE QENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 944  QVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1003

Query: 1440 AFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFIGP 1619
            A GKGIACGGS ++ATPF+T SVDDITDQLHRAGFSRWG+ER YNG  GEM+  +IF+GP
Sbjct: 1004 ALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGP 1063

Query: 1620 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANLHE 1799
            TFYQRLIHM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+ANLHE
Sbjct: 1064 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1123

Query: 1800 RLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAKLL 1979
            RLFTLSD S M++C KC N ANVI+R + GG KIRGP+CR C+S+++IV+VNVPYGAKLL
Sbjct: 1124 RLFTLSDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDIVRVNVPYGAKLL 1183

Query: 1980 CQELFSMGICVKFVTEPC 2033
            CQELFSMGI +KF T  C
Sbjct: 1184 CQELFSMGISLKFETRLC 1201


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score = 1016 bits (2628), Expect = 0.0
 Identities = 501/680 (73%), Positives = 579/680 (85%), Gaps = 3/680 (0%)
 Frame = +3

Query: 3    RILDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVTTNLIEPLLDKLLQCGMEKLR 182
            ++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TG+V+T++ E +L +L  CGME+L 
Sbjct: 561  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELV 620

Query: 183  EDPSLMSLKVKDKIFLNGDWVGVCKDSLSFVMNLRNRRRNGEFSSQVEIKRDQQQREVRV 362
            +D + + L  KDK+FLNGDWVGVC DS+SFV  LR RRR  E   QVEIKRDQ Q+EVR+
Sbjct: 621  DDTTTV-LGKKDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRI 679

Query: 363  FTDAGRILRPLLVVENLKRIKMVKGNY-NFQSLLXXXXXXXXXXXXXXXCKTAWGIKYLF 539
             +DAGRILRPLLVV NL +IK  K  + +FQSLL                KTAWG++YLF
Sbjct: 680  LSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLF 739

Query: 540  MGDKEQLPLDYTHCELDLSFLLGISCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNSK 719
             G + +  + YTHCELD+SFLLG+SC ++PFANHDHARRVLYQS+KHS QAIGF+TTN  
Sbjct: 740  -GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPN 798

Query: 720  IRVDTLSHQLYYPQRPLFQTMISDCLGRPKH--PNGHFPKPEFFNGQNAIVAVNVHLGYN 893
            IRVD LSHQL+YPQRPLFQTM SDCLG+P +   +   PK EF+NGQNAIVAVNVHLGYN
Sbjct: 799  IRVDALSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYN 858

Query: 894  QEDSLVMNRASLERGMFRTEHIRSYKADVENKELIESKRLKMKDKVDFCKVQSKIGRVDS 1073
            QEDSLVMNRASL+RGMFR+EHIRSYKA++ENKE  E KR K +D V+F K+QSKIGRVDS
Sbjct: 859  QEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSE-KRKKPEDIVNFGKIQSKIGRVDS 917

Query: 1074 LDDDGFPFIGANLQSGDIVIGRCAESGTDHSIKLKHTERGKVQKVVLSANDDGTNFAVVS 1253
            LDDDGFPF+GANLQSGDI+IGRCA+SGTDHSIKLKHTERG VQKVVLS+ND+G NFAVVS
Sbjct: 918  LDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVS 977

Query: 1254 LRQVRSPCVGDKFSSMHGQKGVVGLLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLL 1433
            LRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLL
Sbjct: 978  LRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLL 1037

Query: 1434 EAAFGKGIACGGSIKHATPFTTPSVDDITDQLHRAGFSRWGSERFYNGHNGEMMHSMIFI 1613
            EAA GKGIAC GS+++ATPF+T SV+ ITDQLHRAGFSRWG+ER YNG  GEM+ S+IF+
Sbjct: 1038 EAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFM 1097

Query: 1614 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGVKFGEMERDCLLAHGAAANL 1793
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGA+ANL
Sbjct: 1098 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL 1157

Query: 1794 HERLFTLSDFSQMHICGKCNNIANVIQRSVPGGSKIRGPHCRFCESSENIVKVNVPYGAK 1973
            +ERLFTLSD SQ+HIC KC N+ANVI R V GG KIRGP+CRFCES+++IV  +VPYGAK
Sbjct: 1158 YERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAK 1217

Query: 1974 LLCQELFSMGICVKFVTEPC 2033
            LL QELFSMGI +KF TE C
Sbjct: 1218 LLSQELFSMGINLKFETELC 1237