BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00025529
         (267 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   145   4e-33
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   145   8e-33
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     144   1e-32
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    144   1e-32
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     144   2e-32
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   143   2e-32
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   143   3e-32
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   141   1e-31
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    139   3e-31
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   139   4e-31
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   138   9e-31
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   137   1e-30
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       137   2e-30
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   137   2e-30
ref|XP_004292989.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   136   3e-30
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   135   6e-30
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   135   8e-30
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   135   8e-30
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   135   8e-30
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   133   2e-29

>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  145 bits (367), Expect = 4e-33
 Identities = 68/88 (77%), Positives = 76/88 (86%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RN+AKC ARMG CFSSTYATIEVP EEVNS LPDIERNGY FSDGIG ITPDLA +VAE
Sbjct: 547 NRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAE 606

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWPG 3
           KL+L  +   AYQIR+AGCKG++ACWPG
Sbjct: 607 KLKLDIDPPCAYQIRYAGCKGVVACWPG 634


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  145 bits (365), Expect = 8e-33
 Identities = 67/87 (77%), Positives = 76/87 (87%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLAL+VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L+ N  SAYQIR+AGCKG++ACWP
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWP 630


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  144 bits (363), Expect = 1e-32
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L+ N  SAYQIR+AGCKG++ACWP
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWP 630


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  144 bits (363), Expect = 1e-32
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L+ N  SAYQIR+AGCKG++ACWP
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWP 630


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  144 bits (362), Expect = 2e-32
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L+ N  SAYQIR+AGCKG++ACWP
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWP 630


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  143 bits (361), Expect = 2e-32
 Identities = 66/87 (75%), Positives = 77/87 (88%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP ++VNSKLPDIERN Y FSDGIG ++ DLA++VAE
Sbjct: 545 NRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAMEVAE 604

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KLQLT NL SAYQIR+AG KG++ACWP
Sbjct: 605 KLQLTTNLPSAYQIRYAGYKGVVACWP 631


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  143 bits (360), Expect = 3e-32
 Identities = 65/87 (74%), Positives = 76/87 (87%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L+ N  +AYQIR+AGCKG++ACWP
Sbjct: 604 KLHLSVNPPAAYQIRYAGCKGVVACWP 630


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
           subsp. vesca]
          Length = 1197

 Score =  141 bits (355), Expect = 1e-31
 Identities = 64/87 (73%), Positives = 75/87 (86%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  +VN +LPDIERNGY FSDGIG ITPDLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  +  SAYQIR+ GCKG++ACWP
Sbjct: 604 KLKLDRDPPSAYQIRYGGCKGVVACWP 630


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  139 bits (351), Expect = 3e-31
 Identities = 65/87 (74%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EVP  EVNS+LPDIERNGY FSDGIG I+ DLA++VAE
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L  N  SAYQIR+AG KG++ACWP
Sbjct: 604 KLHLNVNPPSAYQIRYAGYKGVVACWP 630


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
           gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
           6 [Theobroma cacao]
          Length = 1197

 Score =  139 bits (350), Expect = 4e-31
 Identities = 64/87 (73%), Positives = 73/87 (83%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RN+AKC ARMG CFSSTYAT+EVP  EVN  LPDIERNGY FSDGIG ITPDLA +VA+
Sbjct: 544 NRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQ 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  N   AYQIR+AGCKG++ACWP
Sbjct: 604 KLKLDLNPPCAYQIRYAGCKGVVACWP 630


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score =  138 bits (347), Expect = 9e-31
 Identities = 64/87 (73%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           ++N+AKC ARMG CFSSTYATIEVP EEVNS LPDI+RNGY FSDGIG ITPDLA +VAE
Sbjct: 544 NKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+   +   AYQIR+AGCKG++ACWP
Sbjct: 604 KLKFDFDPPCAYQIRYAGCKGVVACWP 630


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score =  137 bits (346), Expect = 1e-30
 Identities = 62/87 (71%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RN+AKC ARMG CFSSTYAT+EVP  +VN  LPDI+RNGY FSDGIG ITPDLA++VA+
Sbjct: 543 NRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQ 602

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  N   AYQIR+AGCKG++ACWP
Sbjct: 603 KLKLDLNPPCAYQIRYAGCKGVVACWP 629


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  137 bits (345), Expect = 2e-30
 Identities = 64/87 (73%), Positives = 73/87 (83%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RN+AKC ARMG CFSSTYAT+EVPL EVN  L +IERN Y FSDGIG ITPDLA +VAE
Sbjct: 540 NRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAE 599

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  N  SAYQIR+AGCKG++ACWP
Sbjct: 600 KLKLDINPPSAYQIRYAGCKGVVACWP 626


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
           gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
           6 [Solanum lycopersicum]
          Length = 1197

 Score =  137 bits (344), Expect = 2e-30
 Identities = 63/87 (72%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EV   EVNS+LPDIERNGY FSDGIG +T DL+++VA 
Sbjct: 544 NRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEVAA 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KLQL+ N   AYQIR+AGCKG++ACWP
Sbjct: 604 KLQLSVNPPCAYQIRYAGCKGVVACWP 630


>ref|XP_004292989.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
           subsp. vesca]
          Length = 1065

 Score =  136 bits (342), Expect = 3e-30
 Identities = 64/87 (73%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC+ARMGLCFSSTYAT+EVP  +VN +L DIERNGY FSDGIG ITPDLA+KVA+
Sbjct: 415 NRNVAKCSARMGLCFSSTYATVEVPSSKVNPRLQDIERNGYNFSDGIGKITPDLAMKVAK 474

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL L  +   AYQIR+AG KG+IACWP
Sbjct: 475 KLNLDGDPPCAYQIRYAGFKGVIACWP 501


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
           tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
           tuberosum]
          Length = 1198

 Score =  135 bits (340), Expect = 6e-30
 Identities = 62/87 (71%), Positives = 74/87 (85%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RNVAKC ARMG CFSSTYAT+EV   EVNS+LPDIERNGY FSDGIG ++ DL+++VA 
Sbjct: 545 NRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEVAA 604

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KLQL+ N   AYQIR+AGCKG++ACWP
Sbjct: 605 KLQLSVNPPCAYQIRYAGCKGVVACWP 631


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  135 bits (339), Expect = 8e-30
 Identities = 62/88 (70%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           D+N+AKC ARMG CFSSTYAT+EVP  EV+ +LPDI+RNGY FSDGIG ITPDLA++VA+
Sbjct: 544 DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603

Query: 86  KLQLTAN-LSSAYQIRFAGCKGIIACWP 6
           KL+L  N    AYQIR+AGCKG++ACWP
Sbjct: 604 KLKLDVNPPPCAYQIRYAGCKGVVACWP 631


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  135 bits (339), Expect = 8e-30
 Identities = 62/88 (70%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           D+N+AKC ARMG CFSSTYAT+EVP  EV+ +LPDI+RNGY FSDGIG ITPDLA++VA+
Sbjct: 544 DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603

Query: 86  KLQLTAN-LSSAYQIRFAGCKGIIACWP 6
           KL+L  N    AYQIR+AGCKG++ACWP
Sbjct: 604 KLKLDVNPPPCAYQIRYAGCKGVVACWP 631


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
           gi|462422376|gb|EMJ26639.1| hypothetical protein
           PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  135 bits (339), Expect = 8e-30
 Identities = 64/87 (73%), Positives = 73/87 (83%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           ++NVAKC ARMG CFSSTYAT+EV   EVN  +PDI+RNGY FSDGIG ITPDLAL+VAE
Sbjct: 543 NKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEVAE 601

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  N   AYQIRFAGCKG++ACWP
Sbjct: 602 KLKLDRNPPCAYQIRFAGCKGVVACWP 628


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  133 bits (335), Expect = 2e-29
 Identities = 62/87 (71%), Positives = 70/87 (80%)
 Frame = -2

Query: 266 DRNVAKCTARMGLCFSSTYATIEVPLEEVNSKLPDIERNGYAFSDGIGTITPDLALKVAE 87
           +RN+AKC ARMG CFSSTYAT+EVP  E    LPDIERN Y FSDGIG ITPDLA +VAE
Sbjct: 544 NRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAE 603

Query: 86  KLQLTANLSSAYQIRFAGCKGIIACWP 6
           KL+L  N   AYQIR+AGCKG++ACWP
Sbjct: 604 KLKLEVNPPCAYQIRYAGCKGVVACWP 630