BLASTX nr result

ID: Sinomenium21_contig00025261 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00025261
         (313 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007032989.1| DNA repair protein xp-C / rad4, putative iso...    59   5e-07
ref|XP_007032988.1| DNA repair protein xp-C / rad4, putative iso...    59   5e-07
ref|XP_002305874.2| hypothetical protein POPTR_0004s08580g [Popu...    56   6e-06

>ref|XP_007032989.1| DNA repair protein xp-C / rad4, putative isoform 2 [Theobroma
           cacao] gi|508712018|gb|EOY03915.1| DNA repair protein
           xp-C / rad4, putative isoform 2 [Theobroma cacao]
          Length = 908

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/63 (42%), Positives = 42/63 (66%)
 Frame = +1

Query: 124 NTLPEKDDTDGSDWEDGYIAVSDPRNHNLDNRGRELIIQFNDSPSSSNKKPIRRASAEEK 303
           N   + +D + SDWEDG I   DP +++   R + L I+F++   S+ +KP+RRASAE+K
Sbjct: 32  NLFDDSEDMNDSDWEDGSIPKLDPVDNSPKERMKGLTIEFDEPSGSAGRKPVRRASAEDK 91

Query: 304 ELA 312
           E+A
Sbjct: 92  EIA 94


>ref|XP_007032988.1| DNA repair protein xp-C / rad4, putative isoform 1 [Theobroma
           cacao] gi|508712017|gb|EOY03914.1| DNA repair protein
           xp-C / rad4, putative isoform 1 [Theobroma cacao]
          Length = 974

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/63 (42%), Positives = 42/63 (66%)
 Frame = +1

Query: 124 NTLPEKDDTDGSDWEDGYIAVSDPRNHNLDNRGRELIIQFNDSPSSSNKKPIRRASAEEK 303
           N   + +D + SDWEDG I   DP +++   R + L I+F++   S+ +KP+RRASAE+K
Sbjct: 98  NLFDDSEDMNDSDWEDGSIPKLDPVDNSPKERMKGLTIEFDEPSGSAGRKPVRRASAEDK 157

Query: 304 ELA 312
           E+A
Sbjct: 158 EIA 160


>ref|XP_002305874.2| hypothetical protein POPTR_0004s08580g [Populus trichocarpa]
           gi|550340612|gb|EEE86385.2| hypothetical protein
           POPTR_0004s08580g [Populus trichocarpa]
          Length = 898

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
 Frame = +1

Query: 13  SKLIGDDGQEAEKEVLCDVPMPANVLQEGKITDESFFNTLPEKD-DTDGSDWEDGYIAV- 186
           S   G++G ++  + + D  +  N L         F  T  E D + D  DWEDG  ++ 
Sbjct: 62  SAATGENGLKSNGKQVVDARVTWNDLDA-----RGFQTTFQESDQEMDDIDWEDGSSSIL 116

Query: 187 SDPRNHNLDNRGRELIIQFNDSPSSSNKKPIRRASAEEKELA 312
              +NH  D   RE+ I+F++SP S+ +KPIRRA+AEEK LA
Sbjct: 117 GHVKNHPGDGI-REVTIEFSESPDSAKRKPIRRATAEEKGLA 157