BLASTX nr result
ID: Sinomenium21_contig00024188
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00024188
(963 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 243 8e-62
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 243 8e-62
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 226 1e-56
ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prun... 218 2e-54
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 206 1e-50
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 202 2e-49
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 202 2e-49
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 201 4e-49
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 201 4e-49
gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus... 200 6e-49
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 200 8e-49
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 200 8e-49
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 198 2e-48
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 197 4e-48
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 195 3e-47
ref|XP_007018505.1| RNA-dependent RNA polymerase family protein,... 192 2e-46
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 190 6e-46
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana] 190 6e-46
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 187 5e-45
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 186 9e-45
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 243 bits (620), Expect = 8e-62
Identities = 130/239 (54%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F TS+ IG AAD+WL MDRLLTL ++C EK CLK KML+L D+YY ALDAPKSG +V
Sbjct: 692 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 751
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKD-VPKS 531
V ELK EKFPHFM R +SY S SILG IYD V SF Q T E+W LP FN D VP++
Sbjct: 752 VSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQA 811
Query: 530 CMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXX 351
C++ W + Y++Y EM AAL+ E+KDE A +VI KYKQILYG+A
Sbjct: 812 CLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFD 871
Query: 350 EALAIYKIAYKNAKTNG--VGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRELFN 180
EALAIY + Y+ NG V C+F W VAGRALCK + + + S+VC SVLR++FN
Sbjct: 872 EALAIYHVTYEFV-INGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 929
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 243 bits (620), Expect = 8e-62
Identities = 130/239 (54%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F TS+ IG AAD+WL MDRLLTL ++C EK CLK KML+L D+YY ALDAPKSG +V
Sbjct: 706 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 765
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKD-VPKS 531
V ELK EKFPHFM R +SY S SILG IYD V SF Q T E+W LP FN D VP++
Sbjct: 766 VSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQA 825
Query: 530 CMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXX 351
C++ W + Y++Y EM AAL+ E+KDE A +VI KYKQILYG+A
Sbjct: 826 CLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFD 885
Query: 350 EALAIYKIAYKNAKTNG--VGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRELFN 180
EALAIY + Y+ NG V C+F W VAGRALCK + + + S+VC SVLR++FN
Sbjct: 886 EALAIYHVTYEFV-INGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 943
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 226 bits (575), Expect = 1e-56
Identities = 124/238 (52%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F TS+ IG AAD+WL MDRLLTL ++C EK CLK KML+L D+YY ALDAPKSG +V
Sbjct: 975 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 1034
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPKSC 528
V ELK EKFPHFM R +SY S SILG IYD V SF Q T + VP++C
Sbjct: 1035 VSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKDA---------VPQAC 1085
Query: 527 MKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXXE 348
++ W + Y++Y EM AAL+ E+KDE A +VI KYKQILYG+A E
Sbjct: 1086 LRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRKLEDIFDE 1145
Query: 347 ALAIYKIAYKNAKTNG--VGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRELFN 180
ALAIY + Y+ A NG V C+F W VAGRALCK + + + S+VC SVLR++FN
Sbjct: 1146 ALAIYHVTYEFA-INGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 1202
>ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
gi|462399806|gb|EMJ05474.1| hypothetical protein
PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 218 bits (556), Expect = 2e-54
Identities = 117/237 (49%), Positives = 157/237 (66%), Gaps = 3/237 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F S + A+DSWL++MDRLL LG+ EK +K ML+LVDLYY ALDAPK G +V
Sbjct: 561 FEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVV 620
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPKSC 528
VP ELK FPH+MER NSY S SILGLIYD VN++ + EV +LP F+ +VP+ C
Sbjct: 621 VPGELKSNLFPHYMERVNSYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEEC 680
Query: 527 MKFWVEHYEKYTEEMTAALKLSD-ESKDESANQVIQKYKQILYGSA-XXXXXXXXXXXXX 354
+K W EHY+ Y EM++A++ D +SK+ +A++V++KYK+ILYG A
Sbjct: 681 LKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIF 740
Query: 353 XEALAIYKIAYKNAKTNG-VGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLREL 186
EALAIY++ Y +A + G VG+C FAW VAG ALCK + +Q +I S SVL++L
Sbjct: 741 DEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGARTIEASFSVLKDL 797
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 206 bits (524), Expect = 1e-50
Identities = 119/241 (49%), Positives = 152/241 (63%), Gaps = 1/241 (0%)
Frame = -2
Query: 905 YLERLLFPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPK 726
+LE P+ K AADSWL MDRLLTLG+EC EK CL +KMLKL DLYY A+DAPK
Sbjct: 749 FLESRFHPSIAKCA-AADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPK 807
Query: 725 SGKEVAVPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNK 546
SGK+V VP +LK E++PHFMER Y S SILG IYD V S + + ++ LP F +
Sbjct: 808 SGKKVEVPKDLKPERYPHFMERTYQYTSTSILGQIYDLVAS-AQMDVPCEDIELLPCFLE 866
Query: 545 DVPKSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXX 366
+V S M+ W Y +Y +EM AL +D+ K +A++VIQ YK+ILYG+
Sbjct: 867 EVEPSGMEKWKGLYAQYRDEMNKALSSTDQKK-SNADEVIQNYKKILYGAQEYEERTRPR 925
Query: 365 XXXXXEALAIYKIAYKNAK-TNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRE 189
EA IY I+Y AK + + +C FAW VAG ALC+ HA +Q K+SI C SVL+E
Sbjct: 926 EEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCALCELHALKQKKNSITCLSSVLQE 985
Query: 188 L 186
L
Sbjct: 986 L 986
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 202 bits (514), Expect = 2e-49
Identities = 109/237 (45%), Positives = 153/237 (64%), Gaps = 5/237 (2%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAP-KSGKEV 711
F S+ +G AADSWL++MDRLLTLGN+C E C+KE + L+D+YY ALDAP K G+ +
Sbjct: 639 FQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRI 698
Query: 710 AVPDELKVEKFPHFM--ERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVP 537
VP+ LK E FPHFM +Y S SILG IYD+V ++ + + +VW+LP F+ +V
Sbjct: 699 EVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVH 758
Query: 536 KSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXX 357
+ + W E Y +Y +EM ALK +ES D+ AN+VI+KYK+ LY +A
Sbjct: 759 ELYLVKWKELYGQYRKEMRNALKAGEESNDK-ANEVIRKYKEFLYEAAEFNLSKRRDEEI 817
Query: 356 XXEALAIYKIAYKNAKTNG-VGRCSFAWNVAGRALCKQHA-KEQDKDSIVCSKSVLR 192
EA+A+Y+++Y +AK+ G VG CSFAW VAG ALC + K Q + ++CS S L+
Sbjct: 818 FEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALK 874
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 202 bits (514), Expect = 2e-49
Identities = 109/237 (45%), Positives = 153/237 (64%), Gaps = 5/237 (2%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAP-KSGKEV 711
F S+ +G AADSWL++MDRLLTLGN+C E C+KE + L+D+YY ALDAP K G+ +
Sbjct: 661 FQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRI 720
Query: 710 AVPDELKVEKFPHFM--ERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVP 537
VP+ LK E FPHFM +Y S SILG IYD+V ++ + + +VW+LP F+ +V
Sbjct: 721 EVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVH 780
Query: 536 KSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXX 357
+ + W E Y +Y +EM ALK +ES D+ AN+VI+KYK+ LY +A
Sbjct: 781 ELYLVKWKELYGQYRKEMRNALKAGEESNDK-ANEVIRKYKEFLYEAAEFNLSKRRDEEI 839
Query: 356 XXEALAIYKIAYKNAKTNG-VGRCSFAWNVAGRALCKQHA-KEQDKDSIVCSKSVLR 192
EA+A+Y+++Y +AK+ G VG CSFAW VAG ALC + K Q + ++CS S L+
Sbjct: 840 FEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALK 896
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 201 bits (511), Expect = 4e-49
Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPK-SGKEV 711
F SN AAD W ++MDR LTLG+E EK +KE ML+L+++YY ALDAPK SG +V
Sbjct: 774 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 833
Query: 710 AVPDELKVEKFPHFMERPNS--YCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVP 537
VP++LKVEKFP +M R S + S S+LG IY+ V S+ ++ E+W+LP F+ VP
Sbjct: 834 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVP 893
Query: 536 KSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXX 357
++CM W +Y++Y EM A+ ++E+A VI+KYKQILYG+A
Sbjct: 894 EACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEI 953
Query: 356 XXEALAIYKIAYK-NAKTNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLREL 186
EALAIY I Y A V CSFAW VAG AL K +A+ Q S++CS SVLRE+
Sbjct: 954 YNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1011
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 201 bits (511), Expect = 4e-49
Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPK-SGKEV 711
F SN AAD W ++MDR LTLG+E EK +KE ML+L+++YY ALDAPK SG +V
Sbjct: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
Query: 710 AVPDELKVEKFPHFMERPNS--YCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVP 537
VP++LKVEKFP +M R S + S S+LG IY+ V S+ ++ E+W+LP F+ VP
Sbjct: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVP 895
Query: 536 KSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXX 357
++CM W +Y++Y EM A+ ++E+A VI+KYKQILYG+A
Sbjct: 896 EACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEI 955
Query: 356 XXEALAIYKIAYK-NAKTNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLREL 186
EALAIY I Y A V CSFAW VAG AL K +A+ Q S++CS SVLRE+
Sbjct: 956 YNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
>gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus guttatus]
Length = 878
Score = 200 bits (509), Expect = 6e-49
Identities = 100/211 (47%), Positives = 139/211 (65%), Gaps = 2/211 (0%)
Frame = -2
Query: 878 SNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVAVPD 699
S + TAADSWL+ MDRLLTLG++ EK L +KM++LVD+YY ALDAPKSGK+V VP+
Sbjct: 636 SFNMATAADSWLTFMDRLLTLGDDRTAEKKSLMKKMIRLVDIYYDALDAPKSGKKVKVPE 695
Query: 698 ELKVEKFPHFMERPN--SYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPKSCM 525
EL+ E +PH ME+ + SY S S+LG IYD V++ E+W+LP F+ +P+ +
Sbjct: 696 ELRAEMYPHHMEKGSELSYHSSSVLGQIYDRVDALKNDFVPRKEIWKLPCFDVPIPEIYV 755
Query: 524 KFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXXEA 345
K W YE Y EMT ALK +ES++++A++VI+KYKQ+LY + EA
Sbjct: 756 KMWKSRYESYRREMTKALKSGNESRNDAADEVIKKYKQLLYEAGDMEESAKSSEVIYDEA 815
Query: 344 LAIYKIAYKNAKTNGVGRCSFAWNVAGRALC 252
+AIY + Y A +GV +C+FAW +A ALC
Sbjct: 816 IAIYHVTYDYAMEHGVEKCNFAWRIAASALC 846
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 200 bits (508), Expect = 8e-49
Identities = 110/242 (45%), Positives = 149/242 (61%), Gaps = 8/242 (3%)
Frame = -2
Query: 860 AADSWLSLMDRLLTLG--NECEMEK-NCLKEKMLKLVDLYYHALDAPKSGKEVAVPDELK 690
A+ +W +LMDRLL LG N E E+ +KEK+ +L+DLYY A+DAPKSG +V +P LK
Sbjct: 868 ASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLK 927
Query: 689 VEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPKSCMKFWVE 510
V+KFPHF+++ SY S S+LG IYD V F E VE+ +L +F +P +C++ W E
Sbjct: 928 VDKFPHFLQKKESYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPDTCLRLWEE 987
Query: 509 HYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXXEALAIYK 330
Y Y EM AL S ESK++ A+QVI+KYKQ+LY + +ALAIY
Sbjct: 988 RYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEAPDMEESIRSTTDMYNDALAIYC 1047
Query: 329 IAYKNAKTNG-VGRCSFAWNVAGRALCK----QHAKEQDKDSIVCSKSVLRELFN*QISL 165
+ Y AK G V +C FAW VAG ALCK HAKE ++ + S S+L +L N +I+
Sbjct: 1048 VTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEHNQKVMAMSPSILHKLLNLRINQ 1107
Query: 164 HV 159
V
Sbjct: 1108 KV 1109
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 200 bits (508), Expect = 8e-49
Identities = 105/228 (46%), Positives = 144/228 (63%), Gaps = 3/228 (1%)
Frame = -2
Query: 860 AADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVAVPDELKVEK 681
AADSWL+ MDRLLTL ++ + + LK KML L+D+YY ALDAPKSGK+V++P LK K
Sbjct: 783 AADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHYLKANK 842
Query: 680 FPHFMERPN--SYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPKSCMKFWVEH 507
FPH+ME+ N SY S SILG IYD V+S+ + E+ +LP F ++P+ CM W
Sbjct: 843 FPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFEVEIPQRCMTLWRGR 902
Query: 506 YEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXXXEALAIYKI 327
YE+Y ++MT A+ E + S N+VI+KYK +LYG+ EALAIY +
Sbjct: 903 YEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRKTEDIFDEALAIYHV 962
Query: 326 AYKNAK-TNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLREL 186
Y NA+ T + +C FAW VAG ALC+ HA + + + SVL+E+
Sbjct: 963 TYDNARITYSIEKCGFAWKVAGSALCRIHAMYRKEKDLPILPSVLQEI 1010
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 198 bits (504), Expect = 2e-48
Identities = 114/238 (47%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F SN IG AADSWL++MDRLL LG+E EK +K+KMLKL+D+YY ALDAPK G +V
Sbjct: 746 FHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVY 805
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTRE-QQTVEVWELPSF-NKDVPK 534
+P+EL+ + FPH+MER + S SILGLIYD V S +T E + E+ +LP F ++ V +
Sbjct: 806 LPNELRPDIFPHYMEREKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSE 865
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXX 354
M+ Y+ Y EMT A+K KDESAN+VIQ+YKQ YG+A
Sbjct: 866 FHMEKCRRWYDNYRSEMTQAMK---TDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELY 922
Query: 353 XEALAIYKIAYKNAKTNGVGRCSFAWNVAGRALCKQH-AKEQDKDSIVCSKSVLRELF 183
+AL +YKI Y A GV +C F W VAG LC+ + K+ + S+VC+ SVL+EL+
Sbjct: 923 PQALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRFYLMKKMQEKSLVCAPSVLKELW 980
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 197 bits (502), Expect = 4e-48
Identities = 110/240 (45%), Positives = 154/240 (64%), Gaps = 5/240 (2%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNEC--EMEKNCLKEKMLKLVDLYYHALDAPKSGKE 714
F S +G + +SW++LMDRLLTL N C E EK +KE MLKL+D+YY ALDAPKSG++
Sbjct: 749 FQPSYAMGMSENSWMALMDRLLTLNN-CTNENEKERVKENMLKLIDIYYEALDAPKSGRK 807
Query: 713 VAVPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPK 534
V VP++L E FPH+ME+ S+ S SILGLIYDEV + E+W+LP F+ +VP
Sbjct: 808 VQVPNDLIAELFPHYMEKDKSFTSTSILGLIYDEVEIW-LENDMVGEIWKLPCFDVEVPP 866
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSDESKD-ESANQVIQKYKQILYG-SAXXXXXXXXXXX 360
SC++ W YE+Y ++MT AL L D+SK E A +V +KYK+ YG +
Sbjct: 867 SCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGD 926
Query: 359 XXXEALAIYKIAYKNAK-TNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRELF 183
EALA+Y ++Y+ A V RC FAW +AG AL + + +Q++ ++ C SV+RE+F
Sbjct: 927 IFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKALNCDPSVVREIF 986
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 195 bits (495), Expect = 3e-47
Identities = 104/246 (42%), Positives = 147/246 (59%), Gaps = 21/246 (8%)
Frame = -2
Query: 860 AADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGK------------ 717
A++ WL+LMDR LTLG++C EKN +K+ + +LVD+YY ALDAPK G
Sbjct: 275 ASEGWLALMDRFLTLGDDCVAEKNAVKDNLFELVDIYYDALDAPKQGGKQQDLAKFFEAY 334
Query: 716 -------EVAVPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELP 558
+V VP ELK +FPH+ME+ NS+ S+SILG IYDEV+++ + E+++LP
Sbjct: 335 AALELSFQVEVPRELKPNRFPHYMEKQNSFHSRSILGWIYDEVDAYQLEDHSNKEIFKLP 394
Query: 557 SFNKDVPKSCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXX 378
F +VP++C+ W HY+ Y ++M AL D K E+A +V +KYK++LYG+
Sbjct: 395 HFEVEVPEACLTKWKAHYKDYRDDMCDALLAKDVGKTEAAEEVKRKYKRLLYGAEELEES 454
Query: 377 XXXXXXXXXEALAIYKIAYKNA-KTNGVGRCSFAWNVAGRALCKQHA-KEQDKDSIVCSK 204
EALAIY + Y A V CSFAWN+AG AL K HA K+ + + C
Sbjct: 455 TKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAWNIAGSALLKLHAFKKIGERAFFCLP 514
Query: 203 SVLREL 186
SVL+E+
Sbjct: 515 SVLKEV 520
>ref|XP_007018505.1| RNA-dependent RNA polymerase family protein, putative isoform 1
[Theobroma cacao] gi|508723833|gb|EOY15730.1|
RNA-dependent RNA polymerase family protein, putative
isoform 1 [Theobroma cacao]
Length = 328
Score = 192 bits (488), Expect = 2e-46
Identities = 108/242 (44%), Positives = 150/242 (61%), Gaps = 5/242 (2%)
Frame = -2
Query: 893 LLFPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKE 714
LL SN + A+D+ +++MDRLLTL + E+ LK+ + +L+DLYY +LDAPK+GK+
Sbjct: 87 LLAAFSNAMAIASDNCMAVMDRLLTLEDSNSPEEFLLKKNLQRLIDLYYESLDAPKTGKK 146
Query: 713 VAVPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPK 534
+ VP EL+ + FPH++ER S+ S SILG IYD V S+ E EV +LP F+ P+
Sbjct: 147 IEVPRELRADAFPHYLERQKSFKSASILGKIYDFVKSYG-EELPRKEVRKLPCFDVGFPQ 205
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSD----ESKDESANQVIQKYKQILYGSAXXXXXXXXX 366
C + W E Y++Y E+MT L+ D E +D +AN V KYKQ LYG A
Sbjct: 206 DCREKWTELYKQYREDMTQTLQTLDGKSKELRDVAANAVYNKYKQELYGGAVLEQRQRPL 265
Query: 365 XXXXXEALAIYKIAYKNA-KTNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRE 189
EALAIY I+Y A + + VG+C FAW VAG AL +A EQ + ++ C+ SVL+E
Sbjct: 266 DQIYKEALAIYNISYDYAIRIDDVGKCGFAWKVAGSALLSLYASEQGEKTLSCAPSVLKE 325
Query: 188 LF 183
LF
Sbjct: 326 LF 327
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 190 bits (483), Expect = 6e-46
Identities = 110/238 (46%), Positives = 151/238 (63%), Gaps = 3/238 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F SN IG AADSWL++MDR L LG++ EK +K+KML+L+D+YY ALDAPK G +V
Sbjct: 742 FHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVY 801
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTRE-QQTVEVWELPSF-NKDVPK 534
+P++LK + FPH+MER + S SILGLI+D V S +T E + E+ +LP F ++ V +
Sbjct: 802 LPNKLKPDIFPHYMERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSE 861
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXX 354
M+ Y+ Y EMT A+K KDESAN+VIQ+YKQ YG+A
Sbjct: 862 FHMQKCRLWYDNYRTEMTQAMK---TDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELY 918
Query: 353 XEALAIYKIAYKNAKTNGVGRCSFAWNVAGRALCKQHA-KEQDKDSIVCSKSVLRELF 183
+ALA+YKI Y A GV +C F W VAG LC+ + K+ + +VC+ SVL+EL+
Sbjct: 919 PQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELW 976
>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 190 bits (483), Expect = 6e-46
Identities = 110/238 (46%), Positives = 151/238 (63%), Gaps = 3/238 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F SN IG AADSWL++MDR L LG++ EK +K+KML+L+D+YY ALDAPK G +V
Sbjct: 104 FHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVY 163
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTRE-QQTVEVWELPSF-NKDVPK 534
+P++LK + FPH+MER + S SILGLI+D V S +T E + E+ +LP F ++ V +
Sbjct: 164 LPNKLKPDIFPHYMERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSE 223
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXX 354
M+ Y+ Y EMT A+K KDESAN+VIQ+YKQ YG+A
Sbjct: 224 FHMQKCRLWYDNYRTEMTQAMK---TDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELY 280
Query: 353 XEALAIYKIAYKNAKTNGVGRCSFAWNVAGRALCKQHA-KEQDKDSIVCSKSVLRELF 183
+ALA+YKI Y A GV +C F W VAG LC+ + K+ + +VC+ SVL+EL+
Sbjct: 281 PQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELW 338
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 187 bits (475), Expect = 5e-45
Identities = 102/237 (43%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAP-KSGKEV 711
F S AAD+WL+LMD+ L LG E + E+NC++ K+L+L+++YY ALDAP K GK++
Sbjct: 820 FQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKI 879
Query: 710 AVPDELKVEKFPHFMER-PNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNKDVPK 534
VP LK PHFMER NSY S SILG I+D N + E +EV +LP F +++P+
Sbjct: 880 EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTANMYQ-EEVPNIEVQKLPCFEEELPE 938
Query: 533 SCMKFWVEHYEKYTEEMTAALKLSDESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXX 354
W YE Y ++M A++L ++K+ +A I+KYK+ILYG+
Sbjct: 939 YIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVY 998
Query: 353 XEALAIYKIAYKNAKTNGVGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLRELF 183
EALAIY++ Y +A + V C FAW VAG AL K +A + + S C SV+RE+F
Sbjct: 999 QEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREIF 1055
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 186 bits (473), Expect = 9e-45
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 3/237 (1%)
Frame = -2
Query: 887 FPTSNKIGTAADSWLSLMDRLLTLGNECEMEKNCLKEKMLKLVDLYYHALDAPKSGKEVA 708
F S + AAD+WL+ MD LTLG+ EKN +KEK+L+LVDLYY ALDA K G +V
Sbjct: 1168 FEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVD 1227
Query: 707 VPDELKVEKFPHFMERPNSYCSKSILGLIYDEVNSFSTREQQTVEVWELPSFNK-DVPKS 531
VP ELKV FPH+M + SY S SILG IY+ V+ T ++ EV +LP+F++ +VP +
Sbjct: 1228 VPKELKVSCFPHYMGKNRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDA 1287
Query: 530 CMKFWVEHYEKYTEEMTAALKLSD-ESKDESANQVIQKYKQILYGSAXXXXXXXXXXXXX 354
C+ W E + +Y +EM +AL D +SK++SA+ VI+KY++ILY +
Sbjct: 1288 CLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILYEANDFEESRRPIEEIY 1347
Query: 353 XEALAIYKIAYKNAKTNG-VGRCSFAWNVAGRALCKQHAKEQDKDSIVCSKSVLREL 186
EA AIY + Y +AK G V CSFAW VAG+ALC+ HA+ ++ SVL E+
Sbjct: 1348 NEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHARNNNERFCTIVSSVLMEI 1404