BLASTX nr result
ID: Sinomenium21_contig00023920
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00023920
(404 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282635.1| PREDICTED: putative exosome complex componen... 43 4e-06
ref|XP_004969374.1| PREDICTED: putative exosome complex componen... 40 5e-06
ref|XP_006644470.1| PREDICTED: putative exosome complex componen... 42 5e-06
ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [S... 40 6e-06
gb|EEC71218.1| hypothetical protein OsI_03146 [Oryza sativa Indi... 40 8e-06
gb|EAY76792.1| hypothetical protein OsI_04749 [Oryza sativa Indi... 40 8e-06
dbj|BAD87535.1| ALM beta-like [Oryza sativa Japonica Group] gi|1... 40 8e-06
ref|XP_006476772.1| PREDICTED: putative exosome complex componen... 42 8e-06
>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
vinifera] gi|297733775|emb|CBI15022.3| unnamed protein
product [Vitis vinifera]
Length = 237
Score = 42.7 bits (99), Expect(2) = 4e-06
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
ESSTGLSRMLLSSPTCPVLE
Sbjct: 160 ESSTGLSRMLLSSPTCPVLE 179
Score = 33.5 bits (75), Expect(2) = 4e-06
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 114 ASGKAAEFGRLKDGYM 67
ASGKAAEFG LKDGYM
Sbjct: 143 ASGKAAEFGPLKDGYM 158
>ref|XP_004969374.1| PREDICTED: putative exosome complex component rrp40-like [Setaria
italica]
Length = 239
Score = 39.7 bits (91), Expect(2) = 5e-06
Identities = 17/20 (85%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
++STG+SRMLLSSPTCPVLE
Sbjct: 162 DTSTGMSRMLLSSPTCPVLE 181
Score = 36.2 bits (82), Expect(2) = 5e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -3
Query: 171 VAQGVLIIHEIVSCVPHLLASGKAAEFGRLKDGYMLN 61
V + +I++ +SC+ A+GKAAEFG+LKDGYM +
Sbjct: 129 VVKANIIMNPELSCMD---ATGKAAEFGQLKDGYMFD 162
>ref|XP_006644470.1| PREDICTED: putative exosome complex component rrp40-like [Oryza
brachyantha]
Length = 220
Score = 41.6 bits (96), Expect(2) = 5e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
E+STGLSRMLLSSPTCPVLE
Sbjct: 143 ETSTGLSRMLLSSPTCPVLE 162
Score = 34.3 bits (77), Expect(2) = 5e-06
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = -3
Query: 153 IIHEIVSCVPHLLASGKAAEFGRLKDGYM 67
I++ +SC+ A+GKAAEFG+LKDGYM
Sbjct: 116 IMNPELSCMD---ATGKAAEFGQLKDGYM 141
>ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
gi|241928063|gb|EES01208.1| hypothetical protein
SORBIDRAFT_03g030230 [Sorghum bicolor]
Length = 239
Score = 39.7 bits (91), Expect(2) = 6e-06
Identities = 17/20 (85%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
++STG+SRMLLSSPTCPVLE
Sbjct: 162 DTSTGMSRMLLSSPTCPVLE 181
Score = 35.8 bits (81), Expect(2) = 6e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -3
Query: 153 IIHEIVSCVPHLLASGKAAEFGRLKDGYMLN 61
I++ +SC+ ASGKAAEFG+LKDGYM +
Sbjct: 135 IMNPELSCMD---ASGKAAEFGQLKDGYMFD 162
>gb|EEC71218.1| hypothetical protein OsI_03146 [Oryza sativa Indica Group]
Length = 550
Score = 40.4 bits (93), Expect(2) = 8e-06
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
++STGLSRMLLSSPTCPVLE
Sbjct: 162 DTSTGLSRMLLSSPTCPVLE 181
Score = 34.7 bits (78), Expect(2) = 8e-06
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -3
Query: 153 IIHEIVSCVPHLLASGKAAEFGRLKDGYMLN 61
I++ +SC+ A+GKAAEFG+LKDGYM +
Sbjct: 135 IMNPELSCMD---ATGKAAEFGQLKDGYMFD 162
>gb|EAY76792.1| hypothetical protein OsI_04749 [Oryza sativa Indica Group]
Length = 239
Score = 40.4 bits (93), Expect(2) = 8e-06
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
++STGLSRMLLSSPTCPVLE
Sbjct: 162 DTSTGLSRMLLSSPTCPVLE 181
Score = 34.7 bits (78), Expect(2) = 8e-06
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -3
Query: 153 IIHEIVSCVPHLLASGKAAEFGRLKDGYMLN 61
I++ +SC+ A+GKAAEFG+LKDGYM +
Sbjct: 135 IMNPELSCMD---ATGKAAEFGQLKDGYMFD 162
>dbj|BAD87535.1| ALM beta-like [Oryza sativa Japonica Group]
gi|125572934|gb|EAZ14449.1| hypothetical protein
OsJ_04370 [Oryza sativa Japonica Group]
gi|215768884|dbj|BAH01113.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 239
Score = 40.4 bits (93), Expect(2) = 8e-06
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
++STGLSRMLLSSPTCPVLE
Sbjct: 162 DTSTGLSRMLLSSPTCPVLE 181
Score = 34.7 bits (78), Expect(2) = 8e-06
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -3
Query: 153 IIHEIVSCVPHLLASGKAAEFGRLKDGYMLN 61
I++ +SC+ A+GKAAEFG+LKDGYM +
Sbjct: 135 IMNPELSCMD---ATGKAAEFGQLKDGYMFD 162
>ref|XP_006476772.1| PREDICTED: putative exosome complex component rrp40-like isoform X1
[Citrus sinensis] gi|568845839|ref|XP_006476773.1|
PREDICTED: putative exosome complex component rrp40-like
isoform X2 [Citrus sinensis]
Length = 238
Score = 41.6 bits (96), Expect(2) = 8e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2
Query: 64 ESSTGLSRMLLSSPTCPVLE 5
E+STGLSRMLLSSPTCPVLE
Sbjct: 161 ETSTGLSRMLLSSPTCPVLE 180
Score = 33.5 bits (75), Expect(2) = 8e-06
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 114 ASGKAAEFGRLKDGYM 67
ASGKAAEFG LKDGYM
Sbjct: 144 ASGKAAEFGLLKDGYM 159