BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00023453
         (1134 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               60   4e-07
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    55   9e-06
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          55   9e-06
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    55   9e-06

>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 59.7 bits (143), Expect(2) = 4e-07
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
 Frame = +1

Query: 112  AQSFQMDPVFPTGNSVLISAMSDLNKVQLLDANQEDSILWK---QDKDGKLSLTNVWDII 282
            + S   +PV      VL SA S      L+D   +D+ LWK        + S  + W  +
Sbjct: 924  SSSRSRNPVITLLQRVLPSAAS------LIDCPHDDTYLWKIGHHAPSNRFSTADTWSYL 977

Query: 283  RVKRSKDIWHDLLWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 444
            +   +  +WH  +WFK   P  + + W V  +++HT   LR  G +  PT VLC
Sbjct: 978  QPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLC 1031



 Score = 22.3 bits (46), Expect(2) = 4e-07
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 449  LGEDHSHLLFFDCPLSFLVWSVIAR 523
            L E   HL FF C  S  +WS   R
Sbjct: 1034 LDESREHL-FFRCQFSSEIWSFFMR 1057


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 55.5 bits (132), Expect(2) = 9e-06
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 151 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 318
           N +++   + L + Q LLD   +DS LWK D      + S    W  +  +     WH  
Sbjct: 73  NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132

Query: 319 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 444
           +WFK   P ++ + W V  +++HT   L++ GL+     +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174



 Score = 21.9 bits (45), Expect(2) = 9e-06
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 MCSAGLGEDHSHLLFFDCPLSFLVW 508
           +C+A   +D    LFF+C  S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 55.5 bits (132), Expect(2) = 9e-06
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 151 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 318
           N +++   + L + Q LLD   +DS LWK D      + S    W  +  +     WH  
Sbjct: 73  NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132

Query: 319 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 444
           +WFK   P ++ + W V  +++HT   L++ GL+     +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174



 Score = 21.9 bits (45), Expect(2) = 9e-06
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 MCSAGLGEDHSHLLFFDCPLSFLVW 508
           +C+A   +D    LFF+C  S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 55.5 bits (132), Expect(2) = 9e-06
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 151 NSVLISAMSDLNKVQ-LLDANQEDSILWKQD---KDGKLSLTNVWDIIRVKRSKDIWHDL 318
           N +++   + L + Q LLD   +DS LWK D      + S    W  +  +     WH  
Sbjct: 73  NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132

Query: 319 LWFKGFSPTNSCLFWRVCKDKVHTAMNLRSMGLNDNPTYVLC 444
           +WFK   P ++ + W V  +++HT   L++ GL+     +LC
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLC 174



 Score = 21.9 bits (45), Expect(2) = 9e-06
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 MCSAGLGEDHSHLLFFDCPLSFLVW 508
           +C+A   +D    LFF+C  S +VW
Sbjct: 173 LCNAH--DDSRAHLFFECQFSGVVW 195