BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00022702
         (300 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense]      164   1e-38
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]        140   2e-31
gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]          136   3e-30
gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]             126   4e-27
gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]       125   5e-27
gb|AEM44892.1| RNA polymerase beta chain [Caulophyllum robustum]      125   8e-27
gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]      125   8e-27
gb|ABD93743.1| RNA polymerase beta chain [Drimys winteri]             121   1e-25
ref|YP_784376.1| RNA polymerase beta' subunit [Drimys granadensi...   121   1e-25
gb|ABV65713.1| RNA polymerase beta'' subunit, partial (chloropla...   120   2e-25
gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]         120   2e-25
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic...   120   2e-25
gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simpliciss...   120   3e-25
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...   119   6e-25
gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]       119   6e-25
gb|ABV65706.1| RNA polymerase beta'' subunit, partial (chloropla...   118   1e-24
gb|ABD93850.1| RNA polymerase beta chain [Sanguinaria canadensis]     117   1e-24
gb|ABD93835.1| RNA polymerase beta chain [Takhtajania perrieri]       117   1e-24
gb|ABD93746.1| RNA polymerase beta chain [Eupomatia bennettii]        117   2e-24
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]...   116   3e-24

>gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense]
          Length = 294

 Score =  164 bits (415), Expect = 1e-38
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFYHLI 120
           QSLIILSSSNCFRIGRLNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKI NFYSFYHLI
Sbjct: 108 QSLIILSSSNCFRIGRLNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKITNFYSFYHLI 167

Query: 119 THNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           THNQSL+ KY LLDNLKQTF VLKY LLD+
Sbjct: 168 THNQSLVNKYLLLDNLKQTFQVLKYFLLDE 197


>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
          Length = 774

 Score =  140 bits (353), Expect = 2e-31
 Identities = 77/95 (81%), Positives = 80/95 (84%), Gaps = 5/95 (5%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPK--IMNFYS 135
           QSLIILSSSNC RIG  N   SNNVTKKSIQI+KDTLL I NSLGPLGIVPK  I NFYS
Sbjct: 402 QSLIILSSSNCSRIGPFNGLKSNNVTKKSIQIKKDTLLKIMNSLGPLGIVPKMKITNFYS 461

Query: 134 FYHLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           FYHLITHNQ L+ KY LLDNLKQTF VLKYSLLD+
Sbjct: 462 FYHLITHNQILVNKYLLLDNLKQTFQVLKYSLLDE 496


>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
          Length = 865

 Score =  136 bits (342), Expect = 3e-30
 Identities = 73/93 (78%), Positives = 77/93 (82%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNC RIG  N   SNNVTKKSIQ++K TLL IRNSLGPLGIVPK   FYSFY
Sbjct: 490 QSLIILSSSNCSRIGPFNGLKSNNVTKKSIQMKKATLLKIRNSLGPLGIVPKNYEFYSFY 549

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HLITHNQ L+ KY LLDNLKQ F VLKYSLLD+
Sbjct: 550 HLITHNQILLNKYLLLDNLKQAFQVLKYSLLDE 582


>gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]
          Length = 861

 Score =  126 bits (316), Expect = 4e-27
 Identities = 67/93 (72%), Positives = 76/93 (81%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNC R+G  N   +NNVTK+SI+  +D+LL IRNSLGPLGIVPKI NFYSFY
Sbjct: 488 QSLIILSSSNCSRMGPFNGLKNNNVTKESIK--RDSLLPIRNSLGPLGIVPKITNFYSFY 545

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HLITHNQ L+ KY LLDNLK TF VLKY  +D+
Sbjct: 546 HLITHNQILVNKYLLLDNLKHTFQVLKYYFMDE 578


>gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
          Length = 861

 Score =  125 bits (315), Expect = 5e-27
 Identities = 69/99 (69%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QS IILSSSNC R+G  N    NNVTK+ I+  +D LL IRNSLGPLGIVPKI NFYSFY
Sbjct: 488 QSFIILSSSNCSRMGPFNGLKYNNVTKELIK--RDPLLPIRNSLGPLGIVPKIANFYSFY 545

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDDERPSLS 12
           HLITHNQ LI KY LLDNLKQTF VLKY L+D+    L+
Sbjct: 546 HLITHNQILINKYFLLDNLKQTFQVLKYYLMDENEKILN 584


>gb|AEM44892.1| RNA polymerase beta chain [Caulophyllum robustum]
          Length = 244

 Score =  125 bits (313), Expect = 8e-27
 Identities = 71/95 (74%), Positives = 78/95 (82%), Gaps = 5/95 (5%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGR---LNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNCFRIG    LN NNVTKKS +  +D+LL IRNSLGPLGIVPKI NF SFY
Sbjct: 55  QSLIILSSSNCFRIGPFNGLNYNNVTKKSNK--RDSLLPIRNSLGPLGIVPKIANFSSFY 112

Query: 128 HLITHNQSLITKY*LLDNLKQTF--LVLKYSLLDD 30
           +LITHNQ L+ KY LLDNLKQTF  L+LKY LLD+
Sbjct: 113 YLITHNQILVNKYLLLDNLKQTFQILILKYYLLDE 147


>gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]
          Length = 861

 Score =  125 bits (313), Expect = 8e-27
 Identities = 67/93 (72%), Positives = 76/93 (81%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNC R+G  N   +NNVTK+SI+  +D+LL IRNSLGPLGI PKI NFYSFY
Sbjct: 488 QSLIILSSSNCSRMGPFNGLKNNNVTKESIK--RDSLLPIRNSLGPLGIGPKITNFYSFY 545

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HLITHNQ L+ KY LLDNLK TF VLKY L+D+
Sbjct: 546 HLITHNQILVNKYLLLDNLKHTFQVLKYYLMDE 578


>gb|ABD93743.1| RNA polymerase beta chain [Drimys winteri]
          Length = 840

 Score =  121 bits (303), Expect = 1e-25
 Identities = 64/93 (68%), Positives = 75/93 (80%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QS +ILSSSNC RIG  N   S+NVTK+SIQI++D ++ IRNSLGPLG VPKI NF S Y
Sbjct: 463 QSFLILSSSNCSRIGPFNGSKSHNVTKESIQIKEDPMIPIRNSLGPLGTVPKIANFDSPY 522

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           +LITHNQ L+ KY LLDNLKQTF VLKY L+D+
Sbjct: 523 YLITHNQILLNKYLLLDNLKQTFQVLKYYLMDE 555


>ref|YP_784376.1| RNA polymerase beta' subunit [Drimys granadensis]
            gi|122164451|sp|Q06H07.1|RPOC2_DRIGR RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|112032652|gb|ABH88287.1| RNA polymerase beta' subunit
            [Drimys granadensis]
          Length = 1381

 Score =  121 bits (303), Expect = 1e-25
 Identities = 64/93 (68%), Positives = 75/93 (80%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
            QS +ILSSSNC RIG  N   S+NVTK+SIQI++D ++ IRNSLGPLG VPKI NF S Y
Sbjct: 937  QSFLILSSSNCSRIGPFNGSKSHNVTKESIQIKEDPMIPIRNSLGPLGTVPKIANFDSPY 996

Query: 128  HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
            +LITHNQ L+ KY LLDNLKQTF VLKY L+D+
Sbjct: 997  YLITHNQILLNKYLLLDNLKQTFQVLKYYLMDE 1029


>gb|ABV65713.1| RNA polymerase beta'' subunit, partial (chloroplast) [Bursera
            simaruba]
          Length = 1274

 Score =  120 bits (302), Expect = 2e-25
 Identities = 63/95 (66%), Positives = 74/95 (77%), Gaps = 3/95 (3%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
            QSL+ILSSSNCFR+G  N    +NV K+SI+ QKD L+ IRNSLGPLG V +I NFYSFY
Sbjct: 909  QSLMILSSSNCFRMGPFNDVKYHNVLKQSIKTQKDPLIPIRNSLGPLGTVLEIANFYSFY 968

Query: 128  HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDDER 24
            +LITHNQ  +TKY  LDNLKQTF VL Y L+D+ R
Sbjct: 969  YLITHNQISVTKYLKLDNLKQTFQVLNYYLMDENR 1003


>gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
          Length = 796

 Score =  120 bits (302), Expect = 2e-25
 Identities = 66/93 (70%), Positives = 74/93 (79%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNC R+G   S   NNVTKKSI+  +D L+ IRNS+GPLGIVPKI NFYS  
Sbjct: 492 QSLIILSSSNCSRMGPFKSLKYNNVTKKSIK--RDPLIPIRNSMGPLGIVPKIANFYSSS 549

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HLITHNQ L+ KY LLDNLKQTF VLKY L+D+
Sbjct: 550 HLITHNQILVNKYLLLDNLKQTFHVLKYYLMDE 582


>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
            gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit
            [Nandina domestica]
          Length = 1377

 Score =  120 bits (301), Expect = 2e-25
 Identities = 67/93 (72%), Positives = 74/93 (79%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIGR---LNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
            QSLI LSSSNCFRIG    L  NN+TKKS +  +D+LL IRNSLGPLGIVPKI NF SFY
Sbjct: 929  QSLIFLSSSNCFRIGPFKGLKYNNMTKKSNK--RDSLLLIRNSLGPLGIVPKIANFSSFY 986

Query: 128  HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
            +LITHNQ LI KY LLDNLKQTF  LKY L+D+
Sbjct: 987  YLITHNQILINKYLLLDNLKQTFQKLKYYLMDE 1019


>gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima]
          Length = 861

 Score =  120 bits (300), Expect = 3e-25
 Identities = 65/93 (69%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLI LSSSNCFRIG  N    NNVTKKS +  +D LL IRNSLGPLGIVPKI N +SFY
Sbjct: 488 QSLITLSSSNCFRIGPFNGLKYNNVTKKSNK--RDPLLPIRNSLGPLGIVPKIANCFSFY 545

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           +LITHNQ L+ KY LLDN K+TF VLKY L+D+
Sbjct: 546 YLITHNQILVNKYSLLDNFKETFQVLKYYLMDE 578


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
            gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit
            (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score =  119 bits (297), Expect = 6e-25
 Identities = 63/93 (67%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
            QSLIILSSSNC R+G       +NVTK+SI+  +D L+ IR SLGPLGIVPKI NFYSFY
Sbjct: 938  QSLIILSSSNCSRMGPFKGFKYHNVTKESIK--RDPLIPIRKSLGPLGIVPKIANFYSFY 995

Query: 128  HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
            HLITHNQ L+ KY LLDNLKQTF V+KY  +D+
Sbjct: 996  HLITHNQILVNKYLLLDNLKQTFQVIKYYFMDE 1028


>gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]
          Length = 792

 Score =  119 bits (297), Expect = 6e-25
 Identities = 63/93 (67%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QSLIILSSSNC R+G       +NVTK+SI+  +D L+ IR SLGPLGIVPKI NFYSFY
Sbjct: 419 QSLIILSSSNCSRMGPFKGFKYHNVTKESIK--RDPLIPIRKSLGPLGIVPKIANFYSFY 476

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HLITHNQ L+ KY LLDNLKQTF V+KY  +D+
Sbjct: 477 HLITHNQILVNKYLLLDNLKQTFQVIKYYFMDE 509


>gb|ABV65706.1| RNA polymerase beta'' subunit, partial (chloroplast) [Aphloia
            theiformis]
          Length = 1273

 Score =  118 bits (295), Expect = 1e-24
 Identities = 62/95 (65%), Positives = 73/95 (76%), Gaps = 3/95 (3%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIGRLNS---NNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
            QSLIILSSSNCFR+G  N     NV K+SIQ++KD+L+ I+N+ GPLG   +I NFYSFY
Sbjct: 909  QSLIILSSSNCFRMGPFNDVKYPNVIKESIQMKKDSLIPIKNTSGPLGTDLQIANFYSFY 968

Query: 128  HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDDER 24
            HLITHNQ  +TKY  LDNLKQTF VLKY L D+ R
Sbjct: 969  HLITHNQISVTKYLQLDNLKQTFQVLKYYLTDENR 1003


>gb|ABD93850.1| RNA polymerase beta chain [Sanguinaria canadensis]
          Length = 853

 Score =  117 bits (294), Expect = 1e-24
 Identities = 64/94 (68%), Positives = 74/94 (78%), Gaps = 4/94 (4%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN----SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSF 132
           QSLIILSSSNCFR+G  N    +NNVTK+S++   D L+ IRNSLGPLGIVPKI NF S 
Sbjct: 486 QSLIILSSSNCFRMGPFNGVKYNNNVTKESMK--GDPLIPIRNSLGPLGIVPKIANFSSS 543

Query: 131 YHLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           YHLI+HNQ L+ KY LLDNLKQT  VLKY L+D+
Sbjct: 544 YHLISHNQILVNKYLLLDNLKQTLQVLKYYLMDE 577


>gb|ABD93835.1| RNA polymerase beta chain [Takhtajania perrieri]
          Length = 746

 Score =  117 bits (294), Expect = 1e-24
 Identities = 62/93 (66%), Positives = 75/93 (80%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLN---SNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QS +ILSSSNC RIG  N   S+NVTK+SIQI++D ++ IRNSLGPLG VPKI+NF   Y
Sbjct: 447 QSFLILSSSNCSRIGPFNGSKSHNVTKESIQIKEDPVIPIRNSLGPLGTVPKIVNFDLPY 506

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           +LITHN+ L+ KY LLDNLKQTF VLKY L+D+
Sbjct: 507 YLITHNKILLNKYLLLDNLKQTFKVLKYYLMDE 539


>gb|ABD93746.1| RNA polymerase beta chain [Eupomatia bennettii]
          Length = 859

 Score =  117 bits (292), Expect = 2e-24
 Identities = 59/93 (63%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
 Frame = -2

Query: 299 QSLIILSSSNCFRIGRLNSNN---VTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYSFY 129
           QS +ILSSS+C RIG  N +    VTK+SI+I++D ++ IRNSLGPLG  PKI NFYS Y
Sbjct: 484 QSFLILSSSDCSRIGPFNGSKYHEVTKESIKIKEDPMIPIRNSLGPLGTAPKIANFYSSY 543

Query: 128 HLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
           HL+THNQ L+ KY LLDNLKQTF VLKY L+++
Sbjct: 544 HLLTHNQILLNKYLLLDNLKQTFQVLKYYLMEE 576


>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
            gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
            [Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
            polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
          Length = 1390

 Score =  116 bits (291), Expect = 3e-24
 Identities = 66/96 (68%), Positives = 75/96 (78%), Gaps = 6/96 (6%)
 Frame = -2

Query: 299  QSLIILSSSNCFRIG-----RLNSNNVTKKSIQIQKDTLLTIRNSLGPLGIVPKIMNFYS 135
            QSLIILSSSNC RIG      L  +NVTK+SI+  +D L++IRNS GPLG VPKI NFYS
Sbjct: 939  QSLIILSSSNCSRIGIGPFNGLKYHNVTKESIK--RDPLISIRNSFGPLGTVPKIANFYS 996

Query: 134  -FYHLITHNQSLITKY*LLDNLKQTFLVLKYSLLDD 30
             +YHLITHNQ LI KY LLDNLKQTF VLKY L+D+
Sbjct: 997  SYYHLITHNQILINKYLLLDNLKQTFQVLKYYLIDE 1032