BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00022560
         (843 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   345   1e-92
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              336   7e-90
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   328   1e-87
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   328   2e-87
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   326   6e-87
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   324   2e-86
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   324   2e-86
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   321   2e-85
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   321   2e-85
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   320   3e-85
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   313   5e-83
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   312   1e-82
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus...   311   2e-82
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   310   3e-82
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   309   1e-81
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   305   1e-80
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   305   1e-80
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           305   2e-80
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           304   3e-80
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   300   6e-79

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  345 bits (885), Expect = 1e-92
 Identities = 176/253 (69%), Positives = 210/253 (83%), Gaps = 5/253 (1%)
 Frame = +1

Query: 100 MRHFSRTSIP----PAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR + P     A VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   K+  +
Sbjct: 16  VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP--GKSLVN 73

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK-RMSPLRKIS 444
           + G P  VTA++W+KYYF +IP SV+Q+HFNKGLV ME S+      EK+ ++ PLRKI 
Sbjct: 74  VSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIK 133

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 624
           PN VMEAG++I+VPVS+AE+RISKRFDTIPSGTL+PNADEIEYLQRLV YKD AILVLNK
Sbjct: 134 PNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNK 193

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 804
           PPK+P+KGNLPVHNSMDALAAAAL++ +E+GPKLVHRLDRESSGL LMGR+KES + L W
Sbjct: 194 PPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHW 253

Query: 805 LFSDTSKGKTSSK 843
           LFSD +K K+ SK
Sbjct: 254 LFSDINKAKSLSK 266


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  336 bits (861), Expect = 7e-90
 Identities = 173/255 (67%), Positives = 210/255 (82%), Gaps = 7/255 (2%)
 Frame = +1

Query: 100 MRHFSRTSIP----PAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR + P     A VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   K+  +
Sbjct: 16  VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP--GKSLVN 73

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK-RMSPLRKIS 444
           + G P  VTA++W+KYYF +IP SV+Q+HFNKGLV ME S+      EK+ ++ PLRKI 
Sbjct: 74  VSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIK 133

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRL--VMYKDSAILVL 618
           PN VMEAG++I+VPVS+AE+RISKRFDTIPSGTL+PNADEIEYLQRL  + ++D AILVL
Sbjct: 134 PNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVL 193

Query: 619 NKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQL 798
           NKPPK+P+KGNLPVHNSMDALAAAAL++ +E+GPKLVHRLDRESSGL LMGR+KES + L
Sbjct: 194 NKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHL 253

Query: 799 QWLFSDTSKGKTSSK 843
            WLFSD +K K+ SK
Sbjct: 254 HWLFSDINKAKSLSK 268


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508779021|gb|EOY26277.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 471

 Score =  328 bits (842), Expect = 1e-87
 Identities = 173/253 (68%), Positives = 200/253 (79%), Gaps = 5/253 (1%)
 Frame = +1

Query: 100 MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR + PP      V+RVSN++A LG+PK+GPKPRQLLSLPPFP  P P   KN   
Sbjct: 14  VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLP--GKN--- 68

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 444
            PG  ARVTA++WLKYYF +IP S IQ+HFNKGLVQME S+      E+   M PLRKI 
Sbjct: 69  -PGGTARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKPLRKIK 127

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 624
            N VME G+++ VPVSIAE+RISKRFD IPSGTLYPN DEI+YLQRLV YKD AILVLNK
Sbjct: 128 HNEVMEVGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNK 187

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 804
           PPKLPVKG+LPVHNSMDALAAAALSY H++GPKLVHRLDRESSGL LMGR+KES + L W
Sbjct: 188 PPKLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAHLHW 247

Query: 805 LFSDTSKGKTSSK 843
           LF+D +  K+S K
Sbjct: 248 LFNDLNTVKSSCK 260


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  328 bits (841), Expect = 2e-87
 Identities = 168/252 (66%), Positives = 200/252 (79%), Gaps = 4/252 (1%)
 Frame = +1

Query: 94  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 261
           VA R +SR   PPA     +IRVSN++ARLG PKEGPKPRQLLSLPPFP  P P    + 
Sbjct: 13  VARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHE 72

Query: 262 ASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKI 441
               G  +RVTAV+W+KYYF  I  S IQ+HF +GLVQME      ++ ++ +M P+RKI
Sbjct: 73  G---GVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPG---MIEKEGQMKPMRKI 126

Query: 442 SPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLN 621
            P+ VME G++++VPVS+ ESR+S+RFD IPSGTLYPNADEIEY+QR V YKDSAI+VLN
Sbjct: 127 RPSEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLN 186

Query: 622 KPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQ 801
           KPPKLPVKGNLPVHNSMDALAAAALSYG+  GPKLVHRLDRESSGLHLMGR+KES S LQ
Sbjct: 187 KPPKLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVSLLQ 246

Query: 802 WLFSDTSKGKTS 837
           WL++D +KGK+S
Sbjct: 247 WLYTDFNKGKSS 258


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  326 bits (836), Expect = 6e-87
 Identities = 167/253 (66%), Positives = 202/253 (79%), Gaps = 5/253 (1%)
 Frame = +1

Query: 100 MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR   P  V    VIRVSNN+ARL +PKEGPKPRQLLSLPPFP  P P  AK+S S
Sbjct: 19  VRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLP--AKSSTS 76

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 444
            PGQ   VTAV W+KYYF     SVI++HF +GLVQME        ++K+  M P+RKI 
Sbjct: 77  DPGQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIR 136

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 624
           PN VM+ G+++HVPVSIAE+R+SKR+D IP GTLYPNADEI+YLQRLV+YKDSAI+VLNK
Sbjct: 137 PNEVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNK 196

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 804
           PPKLPVKGNLPVHNSMDALAAAALSY +++GPKLVHRLDRE+SG+ L+GR+K+S S LQW
Sbjct: 197 PPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQW 256

Query: 805 LFSDTSKGKTSSK 843
           LF++ +  K+S K
Sbjct: 257 LFTNINNAKSSCK 269


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score =  324 bits (831), Expect = 2e-86
 Identities = 169/253 (66%), Positives = 198/253 (78%), Gaps = 5/253 (1%)
 Frame = +1

Query: 100 MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR   P  V    VIRVSNNIARL  PKEGPKPRQLLSLPPFP  P P   KNS S
Sbjct: 18  VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLP--GKNSTS 75

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 444
            PG+   VTAV W+KYYF     SVI++HF +GLVQME         +KK  M P+RKI 
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIR 135

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 624
           PN VM+ G+++HV VS+AE++ISKRFD IPSGTL PNADEI+YLQRLV+YKDSAI++LNK
Sbjct: 136 PNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNK 195

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 804
           PPKLPVKGNLPVHNSMDALAAAALSY ++DGPKLVHRLDRESSG+ L+GR+K+S S LQW
Sbjct: 196 PPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQW 255

Query: 805 LFSDTSKGKTSSK 843
           LFS+ +  K+S K
Sbjct: 256 LFSNINNTKSSCK 268


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  324 bits (831), Expect = 2e-86
 Identities = 169/253 (66%), Positives = 198/253 (78%), Gaps = 5/253 (1%)
 Frame = +1

Query: 100 MRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSAS 267
           +RH+SR   P  V    VIRVSNNIARL  PKEGPKPRQLLSLPPFP  P P   KNS S
Sbjct: 18  VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLP--GKNSTS 75

Query: 268 LPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRKIS 444
            PG+   VTAV W+KYYF     SVI++HF +GLVQME         +KK  M P+RKI 
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIR 135

Query: 445 PNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNK 624
           PN VM+ G+++HV VS+AE++ISKRFD IPSGTL PNADEI+YLQRLV+YKDSAI++LNK
Sbjct: 136 PNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNK 195

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQW 804
           PPKLPVKGNLPVHNSMDALAAAALSY ++DGPKLVHRLDRESSG+ L+GR+K+S S LQW
Sbjct: 196 PPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQW 255

Query: 805 LFSDTSKGKTSSK 843
           LFS+ +  K+S K
Sbjct: 256 LFSNINNTKSSCK 268


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  321 bits (822), Expect = 2e-85
 Identities = 166/262 (63%), Positives = 198/262 (75%), Gaps = 4/262 (1%)
 Frame = +1

Query: 70  RSVRLRSVVAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEP 237
           RS+R   ++A R +SR S PP      +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 3   RSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 238 NPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK 417
            P   KN   + G+   VTA+ W+KYYF +I  S IQ+HF KGLVQ+E      L  EK 
Sbjct: 63  LP--GKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGL-DEKG 119

Query: 418 RMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYK 597
            + P+RKI    +ME G++IH+PVS+AE ++++RFDTIPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179

Query: 598 DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRS 777
           DSAI+VLNKPPKLPVKG LPVHNSMDALA AALSY ++DGPKLVHRLDRESSG+ LMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239

Query: 778 KESTSQLQWLFSDTSKGKTSSK 843
           KES   LQWLFS+    K + K
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCK 261


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  321 bits (822), Expect = 2e-85
 Identities = 166/262 (63%), Positives = 198/262 (75%), Gaps = 4/262 (1%)
 Frame = +1

Query: 70  RSVRLRSVVAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEP 237
           RS+R   ++A R +SR S PP      +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 3   RSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 238 NPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKK 417
            P   KN   + G+   VTA+ W+KYYF +I  S IQ+HF KGLVQ+E      L  EK 
Sbjct: 63  LP--GKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGL-DEKG 119

Query: 418 RMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYK 597
            + P+RKI    +ME G++IH+PVS+AE ++++RFDTIPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179

Query: 598 DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRS 777
           DSAI+VLNKPPKLPVKG LPVHNSMDALA AALSY ++DGPKLVHRLDRESSG+ LMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239

Query: 778 KESTSQLQWLFSDTSKGKTSSK 843
           KES   LQWLFS+    K + K
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCK 261


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  320 bits (821), Expect = 3e-85
 Identities = 166/251 (66%), Positives = 198/251 (78%), Gaps = 4/251 (1%)
 Frame = +1

Query: 103 RHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASL 270
           RH+SR   P  V    VI VSNNIARL +PKEGPKPRQLLSLPPFP  P P   K+S S 
Sbjct: 19  RHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLP--DKSSISG 76

Query: 271 PGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPN 450
             Q   VTAV W+KYYF     SVI++HF +GLVQME  D      ++++M P+RKI PN
Sbjct: 77  SRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSS--TQKEEQMKPMRKIRPN 134

Query: 451 VVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPP 630
            VM+ G+++HVPVSI E+RISKR+D IPSGTLYPNADEI+YLQRLV+YKDSAI+VLNKPP
Sbjct: 135 EVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 194

Query: 631 KLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLF 810
           KLPVKG+LPVHNSMDALAAAALSY +++GPKLVHRLDRESSG+ L+GR+K+S S LQWLF
Sbjct: 195 KLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLF 254

Query: 811 SDTSKGKTSSK 843
           S+ +  K+S K
Sbjct: 255 SNINNAKSSCK 265


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  313 bits (802), Expect = 5e-83
 Identities = 161/236 (68%), Positives = 190/236 (80%), Gaps = 1/236 (0%)
 Frame = +1

Query: 139 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPA-RVTAVTWLKY 315
           VIRVSNNI  LG  KEG KP QLLSLPPFP  P P   K  A+ P QP+  VTA++W+KY
Sbjct: 34  VIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLP--GKKVATGPDQPSCHVTAISWIKY 91

Query: 316 YFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNVVMEAGSKIHVPVSI 495
           YF +IP SVIQ HFNKGLVQ+E+++     S++ +   LRKI  + VME G++IHVP+S+
Sbjct: 92  YFDEIPGSVIQTHFNKGLVQLEFNE--LFTSKEGQTRLLRKIKHSEVMEVGARIHVPISV 149

Query: 496 AESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMD 675
           AE+RISKR+D IPSGTLYPNADEI YLQRLV YKD AILVLNKPPKLP+KGNLPVHNSMD
Sbjct: 150 AETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGNLPVHNSMD 209

Query: 676 ALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSDTSKGKTSSK 843
           ALAAAALSY +++GP+LVHRLDRESSGLHLMGR++ES S L  LFS+T K K+ SK
Sbjct: 210 ALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSK 265


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  312 bits (799), Expect = 1e-82
 Identities = 166/263 (63%), Positives = 202/263 (76%), Gaps = 5/263 (1%)
 Frame = +1

Query: 70  RSVRLRSVVAM-RHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAE 234
           +++  R VV+  R +SR + PP      VIRVSNN+A LGSPK+GPKPRQLLSLPPFP  
Sbjct: 3   KNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGL 62

Query: 235 PNPLAAKNSASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEK 414
           P P   +NS +     + VTA++W+KYYF +I  S IQ+HFNKGL  +E  +    +   
Sbjct: 63  PLP--GRNSMA-----SHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSGSIEYG 115

Query: 415 KRMSPLRKISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMY 594
            +MS LRKI  N +MEAG+++HV VS+AE+RISKRFDTIPSGTLYPNADEI+YLQRLV Y
Sbjct: 116 GQMS-LRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKY 174

Query: 595 KDSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGR 774
           KDSAI+VLNKPP+LPVKGNLP+HNSMDALAAAALSY +++GPKLV RLDRESSGL LMGR
Sbjct: 175 KDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGR 234

Query: 775 SKESTSQLQWLFSDTSKGKTSSK 843
           +KES   LQWLFSD +K  +  K
Sbjct: 235 TKESIDHLQWLFSDVNKSNSRCK 257


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus guttatus]
          Length = 460

 Score =  311 bits (798), Expect = 2e-82
 Identities = 164/243 (67%), Positives = 191/243 (78%), Gaps = 4/243 (1%)
 Frame = +1

Query: 127 PPA---VVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPARVTA 297
           PPA    V+RVSNNIA LG+PKEGPKPRQLLSLPPFP   NPL  +NS S+      VTA
Sbjct: 11  PPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPPFPG--NPLPGRNSTSVE----HVTA 64

Query: 298 VTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLL-SEKKRMSPLRKISPNVVMEAGSK 474
           ++WLKYYF D+   VIQ HFNKGLV+ME  +   L  S + +    RKI P+ ++E G +
Sbjct: 65  ISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRGQTMSTRKIKPSEIVEEGDR 124

Query: 475 IHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNL 654
           ++VPVS+AE+++SKRFD IPSGTL+PNADEI YLQRLV YKDSAILVLNKPPKLPVKGNL
Sbjct: 125 VYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKLPVKGNL 184

Query: 655 PVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSDTSKGKT 834
           PVHNSMDALAAAALSY +++GPKLVHRLDRESSGL LMGR+KES S L WLFSD  K  +
Sbjct: 185 PVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKAAS 244

Query: 835 SSK 843
            SK
Sbjct: 245 FSK 247


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  310 bits (795), Expect = 3e-82
 Identities = 162/250 (64%), Positives = 192/250 (76%), Gaps = 1/250 (0%)
 Frame = +1

Query: 97  AMRHFSRTSIPPAVVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 273
           ++RH+SR S P   VIRVS   +A LG PK GPKPRQLLSLPPFP    P          
Sbjct: 14  SIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP------GKHW 67

Query: 274 GQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNV 453
           G+   VTAV+W+KYYF ++  SVIQ+HFNKGLVQME ++      E+ +M P+RKI  N 
Sbjct: 68  GRQGHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 127

Query: 454 VMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPK 633
           VME G++I +PVS+ E RISKR+DTIPSGTL PNADEI+YL+RLV Y+DSAILVLNKPPK
Sbjct: 128 VMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 187

Query: 634 LPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFS 813
           +P+KGNLPVHNSMDALAAAALSY + +GPKLVHRLDRESSGL LMGR+KES S L WLFS
Sbjct: 188 VPLKGNLPVHNSMDALAAAALSYDNNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 247

Query: 814 DTSKGKTSSK 843
           D +K K+ SK
Sbjct: 248 DVNKSKSLSK 257


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  309 bits (791), Expect = 1e-81
 Identities = 161/250 (64%), Positives = 192/250 (76%), Gaps = 1/250 (0%)
 Frame = +1

Query: 97  AMRHFSRTSIPPAVVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 273
           ++RH+SR S P   VIRVS   +A LG PK GPKPRQLLSLPPFP    P          
Sbjct: 14  SIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP------GKHW 67

Query: 274 GQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNV 453
           G+   VTAV+W+KYYF ++  SVIQ+HFNKGLVQME ++      E+ +M P+RKI  N 
Sbjct: 68  GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 127

Query: 454 VMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPK 633
           VME G++I +PVS+ E RISKR+DTIPSGTL PNADEI+YL+RLV Y+DSAILVLNKPPK
Sbjct: 128 VMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 187

Query: 634 LPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFS 813
           +P+KG+LPVHNSMDALAAAALSY + +GPKLVHRLDRESSGL LMGR+KES S L WLFS
Sbjct: 188 VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 247

Query: 814 DTSKGKTSSK 843
           D +K K+ SK
Sbjct: 248 DVNKSKSLSK 257


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score =  305 bits (782), Expect = 1e-80
 Identities = 159/236 (67%), Positives = 189/236 (80%), Gaps = 1/236 (0%)
 Frame = +1

Query: 139 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQPA-RVTAVTWLKY 315
           VIRVSNNI  LG  K+G KP QLLSLPPFP  P P   K  A+ P QP+  VTA++W+KY
Sbjct: 34  VIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLP--GKKVATGPDQPSCHVTAISWIKY 91

Query: 316 YFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNVVMEAGSKIHVPVSI 495
           YF +IP SVIQ+HFNKGLVQ+E ++     S++ +   LRKI  + VME G++IHVP+S+
Sbjct: 92  YFDEIPGSVIQSHFNKGLVQLELNE--LFTSKEGQTRLLRKIKHSEVMEVGARIHVPISV 149

Query: 496 AESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMD 675
           AE+RISKR+D IPSGTLYPNADEI YLQRLV YKD AILVLNKPPKLPVKGNL VHNSMD
Sbjct: 150 AETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPVKGNLHVHNSMD 209

Query: 676 ALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSDTSKGKTSSK 843
           ALAAAALSY +++GP+LVHRLDRESSGLHLMGR++ES S L  LFS+T + K+ SK
Sbjct: 210 ALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKRSKSLSK 265


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  305 bits (781), Expect = 1e-80
 Identities = 158/245 (64%), Positives = 192/245 (78%)
 Frame = +1

Query: 100 MRHFSRTSIPPAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLPGQ 279
           +R +SR  + P VV   + N+A+LGSPKEGPKPRQLLSLPPFP  P P   K S +    
Sbjct: 12  VRLYSR--VAPQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLP--GKKSLNA--- 64

Query: 280 PARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMSPLRKISPNVVM 459
              VTA++W+KYYF +I  SVIQ+HFNK LVQ+E       +  +    P+RKI P+ VM
Sbjct: 65  -CHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVM 123

Query: 460 EAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPPKLP 639
           E G++IH+PVS+AE+ ISKRFDTIPSGTLYPNADEIEYLQRLV YKDSA+LVLNKPPK+P
Sbjct: 124 EVGARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVP 183

Query: 640 VKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLFSDT 819
           VKGN+P+HNSMDALAAAALSYG+++GPKLVHRLDRESSGL LMGR+KES + LQ LFS  
Sbjct: 184 VKGNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYI 243

Query: 820 SKGKT 834
           +K ++
Sbjct: 244 NKAQS 248


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  305 bits (780), Expect = 2e-80
 Identities = 164/247 (66%), Positives = 194/247 (78%), Gaps = 6/247 (2%)
 Frame = +1

Query: 94  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 261
           + +R +SR   P A     VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P        
Sbjct: 4   ILIRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLP-------- 55

Query: 262 ASLPGQPA-RVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLR 435
             LPG+ + RVTA+TW+KYYF ++  +VIQ+HFNK LVQME S+    L+E+ R M P+R
Sbjct: 56  --LPGKKSERVTAITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMR 113

Query: 436 KISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILV 615
           KI PN VM  G++I+VPVS+AESRISKRFD IPSGTL+PNADEI YLQRL    DSAILV
Sbjct: 114 KIKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILV 169

Query: 616 LNKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQ 795
           LNKPP+LPVKG+LPVHNSMDALAAAALSY + +GPKLVHRLDR+SSGL LMGR+KES S 
Sbjct: 170 LNKPPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISH 229

Query: 796 LQWLFSD 816
           L+WLFS+
Sbjct: 230 LEWLFSN 236


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  304 bits (778), Expect = 3e-80
 Identities = 164/246 (66%), Positives = 193/246 (78%), Gaps = 5/246 (2%)
 Frame = +1

Query: 94  VAMRHFSRTSIPPAV----VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNS 261
           + +R +SR   P A     VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P P   KNS
Sbjct: 4   ILIRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLP--GKNS 61

Query: 262 ASLPGQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKR-MSPLRK 438
                   RVTA++W+KYYF ++  +VIQ+HFNK LVQME S+    L+E+ R M P+RK
Sbjct: 62  E-------RVTAISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRK 114

Query: 439 ISPNVVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVL 618
           I PN VM  G++I+VPVS+AESRISKRFD IPSGTL+PNADEI YLQRL    DSAILVL
Sbjct: 115 IKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVL 170

Query: 619 NKPPKLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQL 798
           NKPP+LPVKG+LPVHNSMDALAAAALSY + +GPKLVHRLDR+SSGL LMGR+KES S L
Sbjct: 171 NKPPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHL 230

Query: 799 QWLFSD 816
           +WLFS+
Sbjct: 231 EWLFSN 236


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  300 bits (767), Expect = 6e-79
 Identities = 156/250 (62%), Positives = 187/250 (74%), Gaps = 1/250 (0%)
 Frame = +1

Query: 94  VAMRHFSRTSIPPAVVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAEPNPLAAKNSASLP 273
           V  R +SR + PP+ V+RV+NNIA LG PK+GP PRQL+SLPPFP  P P          
Sbjct: 15  VVTRRYSRVAPPPSSVLRVTNNIAHLGPPKQGPLPRQLISLPPFPGYPLPGKNAGVDGDE 74

Query: 274 GQPARVTAVTWLKYYFADIPASVIQAHFNKGLVQMEYSDPKYLLSEKKRMS-PLRKISPN 450
           G    VTA++W+K+YF +I    IQ HF KGLVQME+   +    E +  + P+RKI  N
Sbjct: 75  GDSGHVTAISWVKFYFEEIHDKAIQTHFTKGLVQMEFRGRRDASRENEDGAIPMRKIKHN 134

Query: 451 VVMEAGSKIHVPVSIAESRISKRFDTIPSGTLYPNADEIEYLQRLVMYKDSAILVLNKPP 630
            VME G KI +PVSIAE RISKR+DTIPSGTLYPNADEI YLQRLV +KDSAI+VLNKPP
Sbjct: 135 EVMEIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPP 194

Query: 631 KLPVKGNLPVHNSMDALAAAALSYGHEDGPKLVHRLDRESSGLHLMGRSKESTSQLQWLF 810
           KLPVKGN+P+HNSMDALAAAALS+G ++GP+LVHRLDRE+SGL +MGRSKES   L  +F
Sbjct: 195 KLPVKGNVPIHNSMDALAAAALSFGKDEGPRLVHRLDRETSGLLVMGRSKESIHYLHSVF 254

Query: 811 SDTSKGKTSS 840
           SD  KG+ SS
Sbjct: 255 SD-YKGRNSS 263