BLASTX nr result
ID: Sinomenium21_contig00021525
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00021525
(2080 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 81 2e-21
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 93 1e-20
gb|ABW81094.1| RT6non-ltr [Cleome spinosa] 64 3e-20
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 85 4e-18
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 74 2e-17
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 71 3e-16
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 72 4e-16
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 9e-16
ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232... 76 8e-15
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 80 6e-14
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 84 2e-13
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 74 3e-12
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 80 4e-12
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 78 1e-11
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 63 2e-11
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 53 4e-11
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 76 5e-11
gb|AAF79288.1|AC068602_11 F14D16.18 [Arabidopsis thaliana] 75 1e-10
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 48 2e-10
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 74 3e-10
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 81.3 bits (199), Expect(3) = 2e-21
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Frame = -3
Query: 1661 SYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTS 1482
++VCKP EG LG R +K++N LKL+W I S DS WVKW+ + +L+K S V +
Sbjct: 112 AFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVREN 171
Query: 1481 NDC-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLS 1305
SW+W +ILK R +A + K + +G S G I GD G++
Sbjct: 172 TSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGIN 231
Query: 1304 TDSS-VDLFSPAQDR--TKSVVSKFKELLNSVEKLP*SEEDKAVWSG 1173
++ V+ + + R + +++ +E L ED+A+W G
Sbjct: 232 KHATVVEAWGNRRRRRHRTNFLNRVEERLILSWNSRNQAEDRALWKG 278
Score = 39.7 bits (91), Expect(3) = 2e-21
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 1054 VWKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI 908
+W V RL R+ N+ DA C C A + HLFF+CPF+ I
Sbjct: 322 MWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEI 370
Score = 30.4 bits (67), Expect(3) = 2e-21
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 1161 MFSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
+FS K +R KV+WY +W IPKH
Sbjct: 286 IFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKH 318
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 93.2 bits (230), Expect(3) = 1e-20
Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Frame = -3
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSND 1476
VCKP EG LG R +K++N LKLVW I S +S W KWV +++RK SI ++ S
Sbjct: 512 VCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTS 571
Query: 1475 C-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTD 1299
SW+W +ILK+R +A S + VG+G+S S+ G I +GD G+ +
Sbjct: 572 MGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPRE 631
Query: 1298 SSVDLFSPAQDRTKSVVSKFKELLNSVEKLP*SE-------EDKAVWSG 1173
+SV + R + S LLN +E++ + ED +W G
Sbjct: 632 ASVADAWTRRSRRRHRTS----LLNEIEEMMAYQRIHHSDAEDTVLWRG 676
Score = 34.7 bits (78), Expect(3) = 1e-20
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 1060 LIVWKLVLGRLPKTARLRRLNIS--CDAQCFRCWNARKDDGHLFFNCPFSNLI*QVVLRG 887
L W + RLP R+ + N S C C N K HLFF+C +++ + + +G
Sbjct: 718 LCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKG 777
Score = 20.8 bits (42), Expect(3) = 1e-20
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = -2
Query: 1158 FSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
FS + ++ VSW+ +W PK+
Sbjct: 685 FSTRDTWHLIKATSSTVSWHKGVWFRHATPKY 716
>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
Length = 459
Score = 63.9 bits (154), Expect(2) = 3e-20
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Frame = -2
Query: 2076 LFTLVMEVFSYLL-RSVVVGEIQVPKICYLIGLSHLLFANDILIFTKANVCSFRNLNCLF 1900
LF + MEV S L ++ +G++Q+ C L+HL+FA+D++IF+KA+ S + +
Sbjct: 30 LFIIAMEVLSRKLDQAASIGQLQLHSKCANPLLTHLIFADDLVIFSKASRQSMQAVQNCL 89
Query: 1899 DTFGE*SGLRVNKHRSHISFSG-DGMVDDGLSEILGMGRENLPLKYLGLP 1753
+ FG SGL VN + + G LS +G+ N P+KYLGLP
Sbjct: 90 NWFGRNSGLEVNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLP 139
Score = 63.9 bits (154), Expect(2) = 3e-20
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 43/191 (22%)
Frame = -3
Query: 1739 KLSHSDCQPIIYSIKAKV*QWKGALLSY-------------------------------- 1656
+L+ +D +P++ I+AKV W LLSY
Sbjct: 144 RLTKADYEPLLEKIRAKVSNWSSKLLSYAGKIQLVSVVIYGMVSSWSQTSTGTARVAWNI 203
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SI-RTVPTSN 1479
+C+P EG L +++++ N LK+VW + S WV W+ +L++ S TVPT+
Sbjct: 204 ICRPRKEGGLNSKKLEELNKVFRLKMVWRVFKYASSLWVAWLKRNVLKRGSFWDTVPTAR 263
Query: 1478 DCSWVWNRILKLRALAFSSIKYIVGSGKSIQL----------LLAPLSSRGLRI*QIGDS 1329
SW ++L ++ LA I+ +G+G LL + S G R+ +I S
Sbjct: 264 H-SWNVRKLLNMKDLAGKFIRCRIGNGNMASFWFDNWTDLGPLLDYIGSDGPRLLRIPLS 322
Query: 1328 TKASFGLSTDS 1296
K S +S S
Sbjct: 323 GKVSDAVSGQS 333
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 84.7 bits (208), Expect(3) = 4e-18
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Frame = -3
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTV-PTSN 1479
VCKP +EG LG R +K++N LKLVW I S +S WVKWV+ +LR S V T +
Sbjct: 865 VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924
Query: 1478 DCSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTD 1299
SW+W ++LK R +A + K VG+GK S G + + GD G+S
Sbjct: 925 QGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRR 984
Query: 1298 SSV-DLFSPAQDR--TKSVVSKFKELLNSVEKLP*SEEDKAVWSG 1173
+V + ++ + R V + ++ L EDK +W G
Sbjct: 985 MTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRG 1029
Score = 32.0 bits (71), Expect(3) = 4e-18
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -1
Query: 1051 WKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI*QVVLRG 887
W GRLP R+ C C + HLFF C F+++I + RG
Sbjct: 1074 WLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARG 1128
Score = 23.5 bits (49), Expect(3) = 4e-18
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = -2
Query: 1158 FSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
FS + R +V W+ V+W PK+
Sbjct: 1038 FSTRDTWHHTRSTSARVPWHKVIWFSHATPKY 1069
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 73.6 bits (179), Expect(3) = 2e-17
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = -3
Query: 1715 PIIYSIKAKV*QWKGALLSYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVK 1536
P + + KAKV W S VC P +EG LG R +K++N +LKL+W + S S WV+
Sbjct: 107 PELNTKKAKV-AW-----SDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQ 159
Query: 1535 WVNTFILRK*SIRTVPTSNDC-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSR 1359
W+ ++LRK S ++ + SW+W +ILK RALA +K+ + +G + S
Sbjct: 160 WLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKI 219
Query: 1358 GLRI*QIGDSTKASFGLSTDSSV 1290
G I G G++ +SV
Sbjct: 220 GRLIDVTGHRGCIDMGITLHASV 242
Score = 36.2 bits (82), Expect(3) = 2e-17
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 1060 LIVWKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFS 917
++ W + RL R+ N D+ C C + + HLFF CP+S
Sbjct: 327 VLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 374
Score = 28.5 bits (62), Expect(3) = 2e-17
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -2
Query: 1185 SVVWQSNG-----MFSVKSALQFVREKFPKVSWYYVLWHPLNIPKHGSL 1054
+V W+ NG F+ K RE KV+WY +W PK+ L
Sbjct: 280 TVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVL 328
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 71.2 bits (173), Expect(3) = 3e-16
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
Frame = -3
Query: 1715 PIIYSIKAKV*QWKGALLSYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVK 1536
P++ KAK+ W S +C+P EG LG + + ++N LKL+W + S + S WV
Sbjct: 1148 PVLNPKKAKI-AW-----SSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVT 1201
Query: 1535 WVNTFILRK*SIRTV-PTSNDCSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSR 1359
W+ TFI+RK + + S+ SW+W ++LK R LA S K V +G S S
Sbjct: 1202 WIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHL 1261
Query: 1358 GLRI*QIGDSTKASFGLSTDSSVDLFSPAQDRTKSVVSKFKELLNSVEKLP*SEED 1191
G + G G+ +++++ + + + + +++L E +
Sbjct: 1262 GRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQERE 1317
Score = 33.5 bits (75), Expect(3) = 3e-16
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 1057 IVWKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI 908
++W V RL R++ N C C NA + HLFF+C +++ +
Sbjct: 1370 LLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYV 1419
Score = 28.9 bits (63), Expect(3) = 3e-16
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 1179 VWQS-----NGMFSVKSALQFVREKFPKVSWYYVLWHPLNIPKHGSL 1054
+W+S N F K VR P+ +WY +W P + PK+ L
Sbjct: 1324 LWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFL 1370
Score = 55.8 bits (133), Expect(2) = 4e-07
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Frame = -2
Query: 2076 LFTLVMEVFSYLLRSVVVGE-IQVPKICYLIGLSHLLFANDILIFTKANVCSFRNLNCLF 1900
LF + M V S+++ V I C IGL+HL FA+D+++F + S + +F
Sbjct: 963 LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022
Query: 1899 DTFGE*SGLRVNKHRSHISFSGDGMVD--DGLSEILGMGRENLPLKYLGLPSLSRQ 1738
F SGL+++ +S I +G D LS LP++YLGLP L++Q
Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSS-FPFANGQLPVRYLGLPLLTKQ 1077
Score = 27.3 bits (59), Expect(2) = 4e-07
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 1751 LLVGKLSHSDCQPIIYSIKAKV*QWKGALLSY 1656
LL +++ +D P+I ++K K+ W LSY
Sbjct: 1073 LLTKQMTTADYSPLIEAVKTKISSWTARSLSY 1104
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 72.4 bits (176), Expect(3) = 4e-16
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Frame = -3
Query: 1715 PIIYSIKAKV*QWKGALLSYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVK 1536
P ++ KAKV W +CKP EG LG R + ++N +LKL+W + S DS WVK
Sbjct: 256 PELHRRKAKV-SWDD-----ICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVK 309
Query: 1535 WVNTFILRK*SIRTV-PTSNDCSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSR 1359
W +L++ S ++ P S+ SW+W ++LK R A + V +G S
Sbjct: 310 WSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGM 369
Query: 1358 GLRI*QIGDSTKASFGLSTDSSV 1290
G + G + G+S + +V
Sbjct: 370 GHLMDVTGQRGQIDLGISRNKTV 392
Score = 31.2 bits (69), Expect(3) = 4e-16
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 1051 WKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI 908
W + RL R++ N D +C C + + HLFF+C +++ I
Sbjct: 480 WLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAI 527
Score = 29.6 bits (65), Expect(3) = 4e-16
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -2
Query: 1194 R*SSVVWQSNG-----MFSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
R + +W+ G FS K VR+K +V+WY +W + PK+
Sbjct: 427 REDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKY 475
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 59.7 bits (143), Expect(2) = 9e-16
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = -2
Query: 2076 LFTLVMEVFSYLLRSVVVG-EIQVPKICYLIGLSHLLFANDILIFTKANVCSFRNLNCLF 1900
LF L ME S L + + C + ++HL+FA+D+L+F +A+ S ++N F
Sbjct: 651 LFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAF 710
Query: 1899 DTFGE*SGLRVNKHRSHISFSG-DGMVDDGLSEILGMGRENLPLKYLGLPSLSRQ 1738
F SGL + +S+I F G D L++ + M LP +YLG+P S++
Sbjct: 711 QKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKK 765
Score = 52.8 bits (125), Expect(2) = 9e-16
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 57/157 (36%)
Frame = -3
Query: 1739 KLSHSDCQPIIYSIKAKV*QWKGALLSY-------------------------------- 1656
KL+++ C+P++ I + W LLSY
Sbjct: 765 KLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAV 824
Query: 1655 --VCK-----------------------PINEGSLGPRRVKDSNFAGILKLVWWIASKKD 1551
VC+ P + G +K N A +LKL+W I K+D
Sbjct: 825 EKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRD 884
Query: 1550 SFWVKWVNTFILRK*SIRTVPTSNDCSWVWNRILKLR 1440
WV+W++++ +++ I TV SN +W+ +I+K R
Sbjct: 885 KLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKAR 921
>ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232257, partial [Cucumis
sativus]
Length = 297
Score = 76.3 bits (186), Expect(2) = 8e-15
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
Frame = -3
Query: 1742 GKLSHSDCQPIIYSIKAKV*QWKGALLSYVCKPINEGSLGPRRVKDSNFAGILKLVWWIA 1563
G+L SDC P+I I +++ W +L++V G L R N A LK++W +
Sbjct: 58 GRLRSSDCDPLIQRITSRIRSWSARVLTFV------GGLDIRDGSSWNIASTLKILWLLL 111
Query: 1562 SKKDSFWVKWVNTFILRK*SIRTVPTSNDCSWVWNRILKLRALAFSSIKYIVGSGKSIQL 1383
K S WV WV ++IL+ S+ + SW + IL+ + + + +K VG+G+ ++
Sbjct: 112 VKSGSLWVAWVESYILKGRSLWEIDAGVGRSWCFREILRKQDILKAHVKMEVGNGRKYRV 171
Query: 1382 LLAPLSSRGLRI*QIGDSTKASFGLSTDSSVDLFSPAQD--RTKSVVSKFKELLNSVE-- 1215
L P G I Q G+ D+S+ F D R V ++ + ++
Sbjct: 172 WLVPWIQGGPIIQQFGERVIYDASSRWDASLVDFMGRDDDWRWPLVYLDLMDIWDRIQGV 231
Query: 1214 KLP*SEEDKAVW 1179
+ S ED+ VW
Sbjct: 232 RPSPSVEDRWVW 243
Score = 33.1 bits (74), Expect(2) = 8e-15
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 1170 SNGMFSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
S+ FS+ SA + +R +V W +LW NIPKH
Sbjct: 247 SHDSFSITSAWETIRPHSSRVGWSGLLWGRGNIPKH 282
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 79.7 bits (195), Expect(2) = 6e-14
Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
Frame = -3
Query: 1703 SIKAKV*QWKGALLSYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNT 1524
S KAK+ W + VCKP +EG LG R +K++N LKLVW I S DS WVKWV
Sbjct: 408 SKKAKI-SW-----NQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEH 461
Query: 1523 FILRK*SIRTV-PTSNDCSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI 1347
+L++ V +N SW+W +ILK R +A K VG+G+S S G I
Sbjct: 462 NLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLI 521
Query: 1346 *QIGDSTKASFGLSTDSSV-DLFSPAQDRTKSVVSKFKELLNSVEKLP*SEEDK 1188
G G+S SV D ++ + R +E+LN++E++ ++ K
Sbjct: 522 DVAGIRGTIDMGISRTMSVADAWTSRRRRHHR-----QEILNTIEEVLSTQHQK 570
Score = 26.6 bits (57), Expect(2) = 6e-14
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 1158 FSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
FS K+ ++R +V+W+ +W P PK+
Sbjct: 593 FSTKNTWNYLRTTSNEVAWHKGVWFPHATPKY 624
Score = 60.1 bits (144), Expect = 4e-06
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = -2
Query: 2076 LFTLVMEVFSYLLRSVV-VGEIQVPKICYLIGLSHLLFANDILIFTKANVCSFRNLNCLF 1900
LF + M+V S LL VV +G I C +GL+HL FA+D++I T S + +F
Sbjct: 219 LFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVF 278
Query: 1899 DTFGE*SGLRVNKHRSHISFSGDGMVDDG-LSEILGMGRENLPLKYLGLPSLSRQAFS 1729
D F + SGL+++ +S I +G L LP++YLGLP ++++ S
Sbjct: 279 DLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSS 336
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 662
Score = 84.3 bits (207), Expect = 2e-13
Identities = 46/148 (31%), Positives = 85/148 (57%)
Frame = -3
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSND 1476
VC+P EG LG + +K++N LKL+W I S+ DS WV+W+ T++L++ + + +++
Sbjct: 383 VCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQ 442
Query: 1475 CSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTDS 1296
SW+W ++LK R A + K + +G++ SS+G I +G+ + G+S
Sbjct: 443 GSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVLGERGQFDMGISKFK 502
Query: 1295 SVDLFSPAQDRTKSVVSKFKELLNSVEK 1212
++ + A DR +S + E LN++E+
Sbjct: 503 TL---AEAWDRRRSRYHR-AETLNTIEQ 526
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 73.9 bits (180), Expect(2) = 3e-12
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 13/206 (6%)
Frame = -3
Query: 1751 LLVGKLSHSDCQPIIYSIKAKV*QWKGALLSY---------VCKPINEGSLGPRRVKDSN 1599
L+ +LS +D P+I I+ ++ W LSY V I + R+ +N
Sbjct: 1048 LVTKRLSSADSLPLIEQIRHRIGTWTSRFLSYAGRLNLISSVLSSITNFLMAAFRLPQAN 1107
Query: 1598 FAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSNDC-SWVWNRILKLRALAFSS 1422
LKL+W I S DS WVKW+ T +L+ S + +S SW+W ++LK R +A +
Sbjct: 1108 DVCCLKLIWRILSHGDSLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTF 1167
Query: 1421 IKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTDSSVDLFSPAQDRTKSVVSK 1242
K V +G+ S G + IGD G+ D V + +
Sbjct: 1168 SKIEVHNGQRTSFWYDDWSCMGRIMNFIGDKGIIDLGIKRDKLVAEVWDTHRSRRHITDY 1227
Query: 1241 FKELLNSVEKLP*SEEDKA---VWSG 1173
++ N + + ++KA VW G
Sbjct: 1228 LNQVENVIATSKANRKEKADDVVWRG 1253
Score = 26.6 bits (57), Expect(2) = 3e-12
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 1818 DGLSEILGMGRENLPLKYLGLPSLSRQAFS 1729
D LS++L LP++YLGLP ++++ S
Sbjct: 1026 DILSKMLDKAAGQLPVRYLGLPLVTKRLSS 1055
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 80.1 bits (196), Expect = 4e-12
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Frame = -3
Query: 1661 SYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTV-PT 1485
S VC P +EG LG R V+++N +LKL+W I S K S WV WV +LR S+ V T
Sbjct: 22 SVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKET 81
Query: 1484 SNDCSWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLS 1305
S+ SW+W ++LK R A K V +G+S SS G + G+ G+
Sbjct: 82 SSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMGIP 141
Query: 1304 TDSSVDLFSPAQDRTKSVVSKFKELLNSVEKLP*S----EEDKAVWSG 1173
DS++ R K + ++K S E D A+W G
Sbjct: 142 KDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSRIVTERDVALWKG 189
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 78.2 bits (191), Expect = 1e-11
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = -3
Query: 1661 SYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTS 1482
++VCKP EG LG R +K++N LKL+W I S DS WVKW+ + +L+K V +
Sbjct: 193 AFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVREN 252
Query: 1481 NDC-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLS 1305
SW+W +ILK R +A + K + +G S G I GD G++
Sbjct: 253 TSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGIN 312
Query: 1304 TDSSV 1290
++V
Sbjct: 313 KHATV 317
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 63.2 bits (152), Expect(3) = 2e-11
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Frame = -3
Query: 1652 CKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSNDC 1473
C P EG LG R N L+L+W + +++DS WV W + LR + ++
Sbjct: 858 CLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHH 917
Query: 1472 SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGL----- 1308
SW+W IL LR LA ++ VG+G+ + S+ G I IG S G+
Sbjct: 918 SWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAV 977
Query: 1307 ---STDSSVDLFSPAQDRTKSVVSKFKELLNSVEKLP*SEEDKAVW 1179
++ S+ + A+ R S+ + LLNS ED W
Sbjct: 978 VTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTW 1023
Score = 32.7 bits (73), Expect(3) = 2e-11
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = -1
Query: 1051 WKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI*QVVLR--GGAL 878
W L RLP AR + + + C C + HLF +C +LI Q VL G +
Sbjct: 1069 WVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQ 1128
Query: 877 QGKDMEDLGLKGLSGFNVGLLVAILSMLWCMSPFFAIYQYGERRI 743
++ +D+ LS N G L L + F I++ R+
Sbjct: 1129 MFREWKDIIEWMLS--NQGSFSGTLKKLAVQTAIFHIWKERNSRL 1171
Score = 21.6 bits (44), Expect(3) = 2e-11
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 1170 SNGMFSVKSALQFVREKFPKVSWYYVLWHPLNIPKHGSLF 1051
S+ FS K + +R++ W +W+ IPK+ F
Sbjct: 1029 SSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNF 1068
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 53.1 bits (126), Expect(2) = 4e-11
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = -2
Query: 1983 LSHLLFANDILIFTKANVCSFRNLNCLFDTFGE*SGLRVNKHRSHISFSG-DGMVDDGLS 1807
LSHLLFA+D+L+FTKA R + LFD F + GL++N +S +SG L+
Sbjct: 238 LSHLLFADDVLLFTKAKNSQLRFIKDLFDRFSKALGLKINLSKSRAFYSGVPHQKIINLT 297
Query: 1806 EILGMGRENLPLKYLGLPSL 1747
I G+ KYLG P L
Sbjct: 298 SISGIRSTTSLGKYLGFPIL 317
Score = 43.5 bits (101), Expect(2) = 4e-11
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Frame = -3
Query: 1757 FLLLVGKLSHSDCQPIIYSIKAKV*QWKGALLSY---------------VCKPINEGSLG 1623
F +L G+ SD II ++ ++ WK LL+ + P + G LG
Sbjct: 314 FPILKGRPKRSDFLFIIEKMRNRLATWKNKLLNKAGTNRRGVHLVGWKKIAMPRHLGGLG 373
Query: 1622 PRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSNDCSWVWNRILKL 1443
+ +++N + KLVW + K WV + ++ ++ S +W+ I++
Sbjct: 374 IKSAREANTCLLGKLVWELFHNKHKLWVSLLAAKYTAGPNLLNASITSSSSPIWSSIIRA 433
Query: 1442 RALAFSSIKYIVGSGKS 1392
+ + S + GSG S
Sbjct: 434 KNVLISGYSWRPGSGSS 450
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 76.3 bits (186), Expect = 5e-11
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Frame = -3
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSND 1476
+CKP EG LG + ++++N LKL+W + S +DS WVKW +L+K S ++ T +
Sbjct: 586 ICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHST 645
Query: 1475 C-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTD 1299
SW+W R+LK R +A S K V +G + S +G I G G+S
Sbjct: 646 LGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRH 705
Query: 1298 SSVDLFSPAQDRTK---SVVSKFKE-LLNSVEKLP*SEEDKAVWSG 1173
++ + R + ++++F+E LL + ED +W G
Sbjct: 706 MTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILWRG 751
>gb|AAF79288.1|AC068602_11 F14D16.18 [Arabidopsis thaliana]
Length = 582
Score = 75.1 bits (183), Expect = 1e-10
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Frame = -3
Query: 1661 SYVCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTS 1482
S VC P EG LG R + ++N +LKL+W I S + S WV+ V +++R+ S V +
Sbjct: 207 SEVCSPKQEGGLGLRSIAEANKVCVLKLIWRILSARRSLWVELVKKYLIRRGSFWLVKEN 266
Query: 1481 NDC-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLS 1305
C SW+W +ILK R A S + V +G++ S G ++G G
Sbjct: 267 TTCGSWIWKKILKYRDTAKSFYRVEVRNGEASSFGFDRWSEMGCLYDRLGARGCIDLGSP 326
Query: 1304 TDSSVDLFSPAQDRTKSVVSKFKELLNSVEK---LP*SEEDKAVWSG 1173
++V R K V+ ++ N + K + +E D A+W+G
Sbjct: 327 MTATVGEVMAGARRRKYRVAILNQVENEIVKQKLIRSNETDVALWNG 373
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 637
Score = 47.8 bits (112), Expect(4) = 2e-10
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Frame = -3
Query: 1619 RRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSNDC-SWVWNRILKL 1443
+R+ + + K + S KDS WV+WV ++RK + +V + SW+W +ILK
Sbjct: 100 KRIYEGEHRRVFKYTVLVVSAKDSLWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQ 159
Query: 1442 RALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTDSSVDLFSPAQDR 1263
R A + V SG + S G +G G++T ++V R
Sbjct: 160 RDKARLFHQMEVRSGTTTSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRR 219
Query: 1262 TKSVVSKFKELLNSVE---KLP*SEEDKAVW 1179
+ ++ N +E + E D+++W
Sbjct: 220 KRHRADFLNQIENHIELVRQARSQESDRSLW 250
Score = 38.5 bits (88), Expect(4) = 2e-10
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 1057 IVWKLVLGRLPKTARLRRLNISCDAQCFRCWNARKDDGHLFFNCPFSNLI*QVVLRGGAL 878
+ W RL RL + N A C C + HLFF+CP+S+ I + L G L
Sbjct: 295 VTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQI-WIALAKGLL 353
Query: 877 QGKDMEDLGL 848
G+++ L
Sbjct: 354 NGRNVSSWSL 363
Score = 25.8 bits (55), Expect(4) = 2e-10
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 1164 GMFSVKSALQFVREKFPKVSWYYVLWHPLNIPKH 1063
G FS Q +R + WY +W P + PK+
Sbjct: 259 GSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKY 292
Score = 20.8 bits (42), Expect(4) = 2e-10
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 797 ALVHVTFFCDLSIWREKNLRR 735
AL+H S+WRE+N RR
Sbjct: 387 ALIH-------SLWRERNGRR 400
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 73.9 bits (180), Expect = 3e-10
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = -3
Query: 1655 VCKPINEGSLGPRRVKDSNFAGILKLVWWIASKKDSFWVKWVNTFILRK*SIRTVPTSND 1476
VCKP EG LG R +K++N LK+VW I S +S WVKW+ F+L+ + V +
Sbjct: 822 VCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFVKENTT 881
Query: 1475 C-SWVWNRILKLRALAFSSIKYIVGSGKSIQLLLAPLSSRGLRI*QIGDSTKASFGLSTD 1299
SW+W +++K R A + K V G S+ G + ++GD G+
Sbjct: 882 LGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQMVEKVGDRGMIDMGIQRQ 941
Query: 1298 SSV 1290
+V
Sbjct: 942 MTV 944