BLASTX nr result
ID: Sinomenium21_contig00021008
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00021008
(385 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden... 76 4e-12
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic... 76 6e-12
ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia trip... 75 1e-11
ref|YP_008993596.1| RNA polymerase beta' subunit (chloroplast) [... 75 1e-11
ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [... 75 1e-11
ref|YP_008993166.1| RNA polymerase beta' subunit (chloroplast) [... 75 1e-11
ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) ... 75 1e-11
ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) ... 75 1e-11
ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) ... 75 1e-11
ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwang... 75 1e-11
ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tuli... 75 1e-11
ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [... 75 1e-11
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]... 74 3e-11
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife... 74 3e-11
ref|YP_008993768.1| RNA polymerase beta' subunit (chloroplast) [... 73 5e-11
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 73 5e-11
ref|YP_008993682.1| RNA polymerase beta' subunit (chloroplast) [... 72 6e-11
ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [... 72 6e-11
ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [... 72 6e-11
ref|YP_008993424.1| RNA polymerase beta' subunit (chloroplast) [... 72 6e-11
>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054374|gb|ABI49768.1| RNA polymerase beta'' subunit
[Platanus occidentalis]
Length = 1387
Score = 76.3 bits (186), Expect = 4e-12
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRD LFH RELFDSCIPKNFH TS+QSFTG +
Sbjct: 1342 LEIKKKNLFEGEMRDTLFHHRELFDSCIPKNFHDTSKQSFTGFND 1386
>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit
[Nandina domestica]
Length = 1377
Score = 75.9 bits (185), Expect = 6e-12
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEIQN NLF+G MRDILFH RELF SCIPKNFH TSEQ FTG +
Sbjct: 1332 LEIQNTNLFEGGMRDILFHHRELFYSCIPKNFHDTSEQKFTGFID 1376
>ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia tripetala]
gi|608608394|gb|AHW51948.1| RNA polymerase beta'' subunit
[Magnolia tripetala]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993596.1| RNA polymerase beta' subunit (chloroplast) [Magnolia odora]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [Magnolia pyramidata]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993166.1| RNA polymerase beta' subunit (chloroplast) [Magnolia cathcartii]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
gi|372862833|gb|AEX98909.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia grandiflora]
gi|372863003|gb|AEX99077.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia grandiflora]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba] gi|372862494|gb|AEX98574.1| RNA polymerase
beta subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba] gi|372862579|gb|AEX98658.1| RNA polymerase beta
subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba] gi|372862664|gb|AEX98742.1| RNA polymerase beta
subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
gi|372862411|gb|AEX98492.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia officinalis]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
gi|302424170|gb|ADL39046.1| RNA polymerase beta' subunit
[Magnolia kwangsiensis]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tulipifera]
gi|122239950|sp|Q0G9M9.1|RPOC2_LIRTU RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|113200984|gb|ABI32499.1| RNA polymerase beta' subunit
[Liriodendron tulipifera]
Length = 1382
Score = 75.1 bits (183), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [Magnolia dealbata]
Length = 1382
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELVSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
[Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
Length = 1390
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH +ELF CIPKNFH TSEQSFTG +
Sbjct: 1345 LEIKKKNLFEGEMRDILFHHKELFHFCIPKNFHDTSEQSFTGFND 1389
>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
[Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
polymerase beta'' subunit protein [Nelumbo nucifera]
gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit
(chloroplast) [Nelumbo nucifera]
gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
(chloroplast) [Nelumbo nucifera]
Length = 1390
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH +ELF CIPKNFH TSEQSFTG +
Sbjct: 1345 LEIKKKNLFEGEMRDILFHHKELFHFCIPKNFHDTSEQSFTGFND 1389
>ref|YP_008993768.1| RNA polymerase beta' subunit (chloroplast) [Magnolia sinica]
Length = 1382
Score = 72.8 bits (177), Expect = 5e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G MRDILFH REL SCIPKNFH TSEQSF G +
Sbjct: 1337 LEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQSFPGFND 1381
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
Length = 1389
Score = 72.8 bits (177), Expect = 5e-11
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGL 256
LE + KNLF+G MRDILFH RELFDSC+ KNFH TSEQSF GL
Sbjct: 1342 LETKKKNLFEGEMRDILFHHRELFDSCVSKNFHDTSEQSFMGL 1384
>ref|YP_008993682.1| RNA polymerase beta' subunit (chloroplast) [Magnolia salicifolia]
Length = 1380
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G M DILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1335 LEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1379
>ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [Magnolia sprengeri]
Length = 1382
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G M DILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliifera]
Length = 1382
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G M DILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381
>ref|YP_008993424.1| RNA polymerase beta' subunit (chloroplast) [Magnolia kobus]
Length = 1382
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 384 LEIQNKNLFDGNMRDILFHQRELFDSCIPKNFHYTSEQSFTGLTE 250
LEI+ KNLF+G M DILFH REL SCIPKNFH TSEQSFTG +
Sbjct: 1337 LEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQSFTGFND 1381