BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00020367
         (1518 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   500   e-139
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   495   e-137
ref|XP_007009784.1| Pseudouridine synthase family protein [Theob...   494   e-137
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   491   e-136
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   485   e-134
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   484   e-134
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              483   e-133
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           482   e-133
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   482   e-133
ref|XP_007143685.1| hypothetical protein PHAVU_007G093000g [Phas...   473   e-130
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   473   e-130
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   470   e-130
ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like...   468   e-129
ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...   468   e-129
ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   467   e-129
gb|EYU39826.1| hypothetical protein MIMGU_mgv1a008941mg [Mimulus...   466   e-128
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   466   e-128
ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like...   462   e-127
ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Caps...   447   e-123
ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutr...   443   e-122

>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
            sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED: RNA
            pseudouridine synthase 5-like isoform X3 [Citrus
            sinensis]
          Length = 389

 Score =  500 bits (1287), Expect = e-139
 Identities = 251/378 (66%), Positives = 286/378 (75%)
 Frame = +3

Query: 9    EEEKAQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIR 188
            E  + Q  L   G PWP  N+GL Y D V  S+S  TLI+FYS  HKNSAP QGWLQRI+
Sbjct: 2    EVYRTQLALAVFGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQ 61

Query: 189  NGQITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQV 368
            NGQIT+DG++V DP+ +L  GSELVYHRLPWKEPD PYL+EV YEDDD +ALNKPSGLQV
Sbjct: 62   NGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQV 121

Query: 369  LPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXX 548
            LPGGLFQQRTVL QLQWR                +Q  HPVPVHRLGRGTSGIL+C    
Sbjct: 122  LPGGLFQQRTVLKQLQWRASKQSSSL-------SSQASHPVPVHRLGRGTSGILLCAKTK 174

Query: 549  XXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIG 728
                    YFAD TSVV     A+NT M   + RKI K+YRALV GI+D+D+V+I+QPIG
Sbjct: 175  LAKTCIAAYFADKTSVVD----ADNTVM-ELSQRKITKIYRALVHGIVDEDKVIIKQPIG 229

Query: 729  MIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGH 908
            ++RYPGVAKGLYVAS SGKPALSKV+VLERD Q N TLVQVEIQSGRPHQIRIHL+F+GH
Sbjct: 230  IVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGH 289

Query: 909  PLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKN 1088
            PLLGDPLYVAGG P  F SE  D    QDGGY RP  PVPGDCGYYLHA+++ + HPT N
Sbjct: 290  PLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTN 349

Query: 1089 EVMKITAPLPSILQTKEE 1142
            EV+KITAPLPS+L+T+EE
Sbjct: 350  EVIKITAPLPSVLKTREE 367


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
            sinensis]
          Length = 390

 Score =  495 bits (1275), Expect = e-137
 Identities = 251/379 (66%), Positives = 287/379 (75%), Gaps = 1/379 (0%)
 Frame = +3

Query: 9    EEEKAQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIR 188
            E  + Q  L   G PWP  N+GL Y D V  S+S  TLI+FYS  HKNSAP QGWLQRI+
Sbjct: 2    EVYRTQLALAVFGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQ 61

Query: 189  NGQITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQV 368
            NGQIT+DG++V DP+ +L  GSELVYHRLPWKEPD PYL+EV YEDDD +ALNKPSGLQV
Sbjct: 62   NGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQV 121

Query: 369  LPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXX 548
            LPGGLFQQRTVL QLQWR             +  +Q  HPVPVHRLGRGTSGIL+C    
Sbjct: 122  LPGGLFQQRTVLKQLQWRA-------SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTK 174

Query: 549  XXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIG 728
                    YFAD TSVV     A+NT M   + RKI K+YRALV GI+D+D+V+I+QPIG
Sbjct: 175  LAKTCIAAYFADKTSVVD----ADNTVM-ELSQRKITKIYRALVHGIVDEDKVIIKQPIG 229

Query: 729  MIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLV-QVEIQSGRPHQIRIHLSFIG 905
            ++RYPGVAKGLYVAS SGKPALSKV+VLERD Q N TLV QVEIQSGRPHQIRIHL+F+G
Sbjct: 230  IVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQQVEIQSGRPHQIRIHLAFLG 289

Query: 906  HPLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTK 1085
            HPLLGDPLYVAGG P  F SE  D    QDGGY RP  PVPGDCGYYLHA+++ + HPT 
Sbjct: 290  HPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTT 349

Query: 1086 NEVMKITAPLPSILQTKEE 1142
            NEV+KITAPLPS+L+T+EE
Sbjct: 350  NEVIKITAPLPSVLKTREE 368


>ref|XP_007009784.1| Pseudouridine synthase family protein [Theobroma cacao]
            gi|508726697|gb|EOY18594.1| Pseudouridine synthase family
            protein [Theobroma cacao]
          Length = 378

 Score =  494 bits (1272), Expect = e-137
 Identities = 241/374 (64%), Positives = 288/374 (77%)
 Frame = +3

Query: 21   AQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQI 200
            +QT     G PWP+ N GL Y D ++ S+S  TLI+FYS  +KNSAP QGWLQRI+NGQI
Sbjct: 5    SQTQSLVFGLPWPELNDGLFYDDVIKPSDSELTLIEFYSSKYKNSAPSQGWLQRIQNGQI 64

Query: 201  TIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGG 380
            ++DG++V DP+T+LRG SELVYHRLPWKEPDAP+ +EVLYEDDD +ALNKPSGLQVLPGG
Sbjct: 65   SVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSGLQVLPGG 124

Query: 381  LFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXX 560
            LFQQRTVL+QL WR+               +Q  HPVPVHRLGRGTSGIL+C        
Sbjct: 125  LFQQRTVLTQLSWRMRKQTSSLA-------SQESHPVPVHRLGRGTSGILLCAKTKAAKT 177

Query: 561  XXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRY 740
                YFADGTS++       N  M P   RKI K+YRALV+GI+ +D+VVI QPIG+++Y
Sbjct: 178  CLAAYFADGTSLIGAN---SNRKMQPSCTRKISKIYRALVTGILGEDKVVINQPIGIVQY 234

Query: 741  PGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLG 920
            PGVAKGLYVAS SGKPALSKV VLE+D Q N+TLVQV+I+SGRPHQIRIHLSFIGHPLLG
Sbjct: 235  PGVAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLSFIGHPLLG 294

Query: 921  DPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMK 1100
            DPLY+AGG P  F SE  D++  QDGGY RP  PVPGDCGYYLHAHR+++ HPT +E++ 
Sbjct: 295  DPLYIAGGQPRCFDSEFVDENYAQDGGYQRPVNPVPGDCGYYLHAHRLLLSHPTTDEIIN 354

Query: 1101 ITAPLPSILQTKEE 1142
            ITAPLP +LQT++E
Sbjct: 355  ITAPLPPVLQTQDE 368


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
            gi|222851845|gb|EEE89392.1| hypothetical protein
            POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  491 bits (1265), Expect = e-136
 Identities = 248/377 (65%), Positives = 288/377 (76%), Gaps = 2/377 (0%)
 Frame = +3

Query: 21   AQTTLERLGFPWPDFNQGLTYKDNVQLS-ESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQ 197
            +++ L   G PWPD N+GL Y D V  S +SG TLI FYS  +KNSAP QGWLQRI NGQ
Sbjct: 7    SRSPLCSFGSPWPDLNEGLFYNDVVSTSSDSGLTLIHFYSSKYKNSAPLQGWLQRIHNGQ 66

Query: 198  ITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPG 377
            ITIDG++V +P  +LR G ELVYHRLPW+EPDAPYL++VLYEDDD VALNKP GLQVLPG
Sbjct: 67   ITIDGEVVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPG 126

Query: 378  GLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXX 557
            GLFQQRTVL QLQWR                 Q  HPVPVHRLGRGTSGIL+C       
Sbjct: 127  GLFQQRTVLMQLQWRASKGSSSLAI-------QGSHPVPVHRLGRGTSGILLCAKTKVAK 179

Query: 558  XXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIR 737
                 YFADGTS++ +   + N NM     RKI K+YRALV+GI+++D+++I+QPIG +R
Sbjct: 180  TSLAAYFADGTSLIGD---SSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMR 236

Query: 738  YPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLL 917
            YPGVAKGLYVAS SGKPALSKV VLERD Q N TLVQVEI+SGRPHQIRIHLSFIGHPLL
Sbjct: 237  YPGVAKGLYVASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLL 296

Query: 918  GDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNE-V 1094
            GDPLY  GG P  F SE +D+   +DGGY RP+KPVPGDCGYYLHAH++V+ HPTKNE V
Sbjct: 297  GDPLYDVGGQPMCFDSEHEDESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQV 356

Query: 1095 MKITAPLPSILQTKEES 1145
            +KITAPLPSIL+T+ E+
Sbjct: 357  IKITAPLPSILRTQAET 373


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
            vesca]
          Length = 375

 Score =  485 bits (1248), Expect = e-134
 Identities = 239/369 (64%), Positives = 280/369 (75%)
 Frame = +3

Query: 36   ERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQ 215
            +  G PWPD N GL+Y D V+ S+S  TLI+FYS  +K+SAP QGWLQRIRNGQIT+DG+
Sbjct: 11   QTFGLPWPDLNDGLSYNDVVKSSDSELTLIEFYSSKYKSSAPLQGWLQRIRNGQITVDGE 70

Query: 216  IVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQR 395
            +V D DT+LR GSELVYHRLPW EPDAPYL+EVLYEDDD +ALNKP GLQVLPGGLFQQR
Sbjct: 71   VVRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPGGLQVLPGGLFQQR 130

Query: 396  TVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXY 575
            TVL+QL WR                 Q  H VPVHRLGRGTSGIL+C            Y
Sbjct: 131  TVLTQLLWRESQKFDHLA-------CQKSHLVPVHRLGRGTSGILLCAKTKHAKTQLAAY 183

Query: 576  FADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAK 755
            FADGTS + +      TN      RKI K+YRALV+GII +DEV+++QPIG +RYPGVAK
Sbjct: 184  FADGTSHIGDD---STTNTKLHTTRKITKIYRALVTGIICEDEVIVKQPIGTVRYPGVAK 240

Query: 756  GLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV 935
            GLY+AS +GKPALSKV VL+RD Q N+T+VQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV
Sbjct: 241  GLYIASPAGKPALSKVEVLDRDIQKNHTIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV 300

Query: 936  AGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPL 1115
            AGG P    S+  D+    DGG+ RP+KPVPGDCGY LHAH++V+ HP+ NEV+KITAPL
Sbjct: 301  AGGQPKCLGSDLVDESFADDGGFKRPTKPVPGDCGYNLHAHQVVLSHPSSNEVIKITAPL 360

Query: 1116 PSILQTKEE 1142
            P +L+T+EE
Sbjct: 361  PLVLRTREE 369


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  484 bits (1245), Expect = e-134
 Identities = 236/370 (63%), Positives = 284/370 (76%)
 Frame = +3

Query: 36   ERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQ 215
            +++G PWP+ N GL+Y D V+ S++G TLI+FYS  +K+SAP QGWLQRI++ QIT+D +
Sbjct: 5    KKIGVPWPELNDGLSYNDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITVDAK 64

Query: 216  IVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQR 395
            +VTDP+T+LR GS+LVYHRLPWKEPDAP+ I+VLYEDDD +ALNKPSGLQVLPGGLFQQR
Sbjct: 65   VVTDPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPSGLQVLPGGLFQQR 124

Query: 396  TVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXY 575
            TVL+QLQW                  Q PHPVPVHRLGRGTSGIL+C            Y
Sbjct: 125  TVLTQLQWETNNKCTFEAH-------QKPHPVPVHRLGRGTSGILLCAKTKLARVHLASY 177

Query: 576  FADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAK 755
            FADGTS +  +R   N  +G     KI K+YRALVSGIID D+V I+QPIGM++YPGVAK
Sbjct: 178  FADGTSRIGGKRDT-NQELG-----KIAKIYRALVSGIIDNDKVTIDQPIGMVKYPGVAK 231

Query: 756  GLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV 935
            GLYVAS SGKPALS V++LER+ + N+TLVQV+IQSGRPHQIRIHLSFIGHPL+GDPLY 
Sbjct: 232  GLYVASQSGKPALSVVDILERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLIGDPLYA 291

Query: 936  AGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPL 1115
             GG P     +  DD   +DGGYPRP KPVPGDCGYYLHAH +++ HP  NE+++I APL
Sbjct: 292  VGGQPKCLDYDFLDDSFAEDGGYPRPPKPVPGDCGYYLHAHELLLTHPITNEIIEIIAPL 351

Query: 1116 PSILQTKEES 1145
            PSILQT EE+
Sbjct: 352  PSILQTHEEA 361


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  483 bits (1242), Expect = e-133
 Identities = 237/349 (67%), Positives = 270/349 (77%)
 Frame = +3

Query: 45   GFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQIVT 224
            G PWPDFN GLTY D V  S+S  TLID+YS  HKNSAP QGWLQRI  GQIT+DG +VT
Sbjct: 6    GVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTVVT 65

Query: 225  DPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRTVL 404
            +P T+LR GS+LVYHRLPW+EPDAPYL+E+LYEDDD +ALNKPSGLQVLPGGLFQQRTVL
Sbjct: 66   EPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRTVL 125

Query: 405  SQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYFAD 584
            +QLQWR              P  Q  H VPVHRLGRGTSGIL+C            YFAD
Sbjct: 126  TQLQWRANKQNSL-------PACQESHSVPVHRLGRGTSGILLCAKTKLAKTRLAAYFAD 178

Query: 585  GTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKGLY 764
            GTSVV   R A+   M    +RKI K+YRALV+GI+DKDE+VIEQPIGM++YPGVAKGLY
Sbjct: 179  GTSVVGGNRDAD---MKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLY 235

Query: 765  VASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAGG 944
            VAS SGKPALSKV++LERD QG++ +VQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV GG
Sbjct: 236  VASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGG 295

Query: 945  CPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNE 1091
             P    +E  ++    DGGY RP KPVPGDCGY+LHAH++V+ HPT NE
Sbjct: 296  QPKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 344


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  482 bits (1241), Expect = e-133
 Identities = 242/380 (63%), Positives = 284/380 (74%)
 Frame = +3

Query: 6    AEEEKAQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRI 185
            +  E+AQ    R GF WP+ N GL Y D V+ S+S STLI FYS+ +KNSAP QGWLQRI
Sbjct: 4    SSSERAQAL--RFGFSWPELNDGLFYSDVVRTSDSESTLIQFYSRKYKNSAPLQGWLQRI 61

Query: 186  RNGQITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQ 365
            RNGQIT++G++V DPDT+L  GSELVYHRLPWKEP APY++E+LYED D +AL+KPS LQ
Sbjct: 62   RNGQITVNGRVVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSELQ 121

Query: 366  VLPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXX 545
            VLPGGLFQQRTVL+QLQWR                   P+PVPVHRLGRGTSGIL+C   
Sbjct: 122  VLPGGLFQQRTVLTQLQWRATKQSSSLVCCE-------PNPVPVHRLGRGTSGILLCAKT 174

Query: 546  XXXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPI 725
                     YFADGTS V         N+   A RKILK+YRALV+GI+ +D+V++EQPI
Sbjct: 175  KFAKTQLAAYFADGTSYVGGN---SKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPI 231

Query: 726  GMIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIG 905
            G ++YPGVAKGLYVAS SGKPALSKV VLERD + N TLV+VEIQSGRPHQIRIHLSFIG
Sbjct: 232  GTVQYPGVAKGLYVASPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIG 291

Query: 906  HPLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTK 1085
            HPLLGDPLYV GG P  F  E  D    QDGG+PRP+KPVPGDCGY LHAH + + HPT 
Sbjct: 292  HPLLGDPLYVVGGRPRCFDPEFVDGSFAQDGGFPRPAKPVPGDCGYTLHAHHVSLSHPTT 351

Query: 1086 NEVMKITAPLPSILQTKEES 1145
            NEV++ITAPLP +L T++E+
Sbjct: 352  NEVIEITAPLPPVLWTRQEA 371


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score =  482 bits (1241), Expect = e-133
 Identities = 236/349 (67%), Positives = 270/349 (77%)
 Frame = +3

Query: 45   GFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQIVT 224
            G PWPDFN GLTY D V  S+S  TLID+YS  HKNSAP QGWLQRI  GQIT+DG +VT
Sbjct: 6    GVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTVVT 65

Query: 225  DPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRTVL 404
            +P T+LR GS+LVYHRLPW+EPDAPYL+E+LYEDDD +ALNKPSGLQVLPGGLFQQRTVL
Sbjct: 66   EPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRTVL 125

Query: 405  SQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYFAD 584
            +QLQWR              P  Q  H VPVHRLGRGTSGIL+C            YFAD
Sbjct: 126  TQLQWRANKQNSL-------PACQESHSVPVHRLGRGTSGILLCAKTKLAKTRLAAYFAD 178

Query: 585  GTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKGLY 764
            GTSVV   R   + +M    +RKI K+YRALV+GI+DKDE+VIEQPIGM++YPGVAKGLY
Sbjct: 179  GTSVVGGNRL--DADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLY 236

Query: 765  VASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAGG 944
            VAS SGKPALSKV++LERD QG++ +VQVEIQSGRPHQIRIHLSFIGHPLLGDPLYV GG
Sbjct: 237  VASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGG 296

Query: 945  CPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNE 1091
             P    +E  ++    DGGY RP KPVPGDCGY+LHAH++V+ HPT NE
Sbjct: 297  QPKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 345


>ref|XP_007143685.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
            gi|561016875|gb|ESW15679.1| hypothetical protein
            PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  473 bits (1217), Expect = e-130
 Identities = 234/369 (63%), Positives = 280/369 (75%)
 Frame = +3

Query: 39   RLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQI 218
            + G PWP+ N GL+Y D V+ S+SG TLI+FY   +K+SAP QGWLQRI++GQIT DG++
Sbjct: 6    KFGIPWPECNDGLSYDDVVRSSDSGLTLIEFYFTKYKSSAPLQGWLQRIKSGQITFDGRV 65

Query: 219  VTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRT 398
            VTD  TVLR GS+LVYHRLPWKEPDAP++IEVLYEDD+ +ALNKPSGLQVLPGGLFQQRT
Sbjct: 66   VTDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPSGLQVLPGGLFQQRT 125

Query: 399  VLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYF 578
            VL+QLQW                  + PHPVPVHRLGRGTSGIL+C            YF
Sbjct: 126  VLTQLQWEANLH-------------KKPHPVPVHRLGRGTSGILLCAKTKLARARLASYF 172

Query: 579  ADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKG 758
            ADGTS +  +R   +TN     + KI K+YR L SGI++ DEV I QPIG+++YPGVAKG
Sbjct: 173  ADGTSHIGGKR---DTNG---EIGKIAKIYRGLASGIVENDEVTINQPIGVVKYPGVAKG 226

Query: 759  LYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVA 938
            LYVAS SGKPALS V +LER+ Q N+TLVQV+IQSGRPHQIRIHLSFIGHPLLGDPLY  
Sbjct: 227  LYVASQSGKPALSVVGILERNVQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGD 286

Query: 939  GGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPLP 1118
            GG P     +S D+   +DGGY RP+KPVPGDCGY LHAH++V+ HP  NE+++ITAPLP
Sbjct: 287  GGQPKCLDCDSIDESFAEDGGYQRPTKPVPGDCGYNLHAHKLVLSHPLTNELIEITAPLP 346

Query: 1119 SILQTKEES 1145
            S+LQT EE+
Sbjct: 347  SVLQTPEEA 355


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  473 bits (1217), Expect = e-130
 Identities = 235/371 (63%), Positives = 284/371 (76%), Gaps = 1/371 (0%)
 Frame = +3

Query: 36   ERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQ 215
            +++G PWP+FN GL+Y D V+ S++G TLI+FYS  +K+SAP QGWLQRI++ QIT+D +
Sbjct: 5    KKIGIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDAR 64

Query: 216  IVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQR 395
            +VTDP+T+LR GS+LVYHR+PWKEPDAP+ IEVLYEDDD +ALNKPSGLQVLPGGLFQQR
Sbjct: 65   VVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQR 124

Query: 396  TVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXY 575
            TVL+QLQW                  Q PHPVPVHRLGRGTSGIL+C            Y
Sbjct: 125  TVLTQLQWETNNKSTIEAH-------QKPHPVPVHRLGRGTSGILLCAKTKLARARLASY 177

Query: 576  FADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAK 755
            FADGTS +  +    +TN     + KI K+YRALVSGII+ D+V I QPIGM++YPGVAK
Sbjct: 178  FADGTSRIEGK---GHTNQ---ELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAK 231

Query: 756  GLYVASLSGKPALSKVNVLERDFQGNNTLVQ-VEIQSGRPHQIRIHLSFIGHPLLGDPLY 932
            GLYVAS SGKPALS V+VLER+ + N+TLVQ V+IQSGRPHQIRIHLSFIGHPLLGDPLY
Sbjct: 232  GLYVASQSGKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGDPLY 291

Query: 933  VAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAP 1112
              GG P     +  D+   +DGGY RPSKPVPGDCGY+LHAHR+ + HP  NE++++ AP
Sbjct: 292  AVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAP 351

Query: 1113 LPSILQTKEES 1145
            LPSILQT EE+
Sbjct: 352  LPSILQTHEEA 362


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  470 bits (1209), Expect = e-130
 Identities = 238/378 (62%), Positives = 284/378 (75%), Gaps = 2/378 (0%)
 Frame = +3

Query: 15   EKAQTTLER--LGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIR 188
            EKA+    R   G PWP  N+GL+Y D V+ +++G TLI+FY + +KNSAP QGWLQRI+
Sbjct: 26   EKAELAAVRAYFGVPWPQRNEGLSYHDIVRPTDAGLTLIEFYFRKYKNSAPLQGWLQRIQ 85

Query: 189  NGQITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQV 368
            N QITIDG++V  PDT LR G+ELVYHRLPW+EPDAPYL+EVL+EDD  + +NKPSGLQV
Sbjct: 86   NKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVNKPSGLQV 145

Query: 369  LPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXX 548
            LPGGL+QQRTVL+QLQW              +   Q  HPVPVHRLGRGTSGIL+C    
Sbjct: 146  LPGGLYQQRTVLTQLQWHACKLTTT------SSGCQKTHPVPVHRLGRGTSGILLCAKTK 199

Query: 549  XXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIG 728
                    YFA+GTSVV  ++C   TN     +RKI K+YRALVSG++D DE VI+QPIG
Sbjct: 200  LCKSRLAAYFAEGTSVV-EEKC---TNSECNTMRKICKIYRALVSGVMDMDEAVIKQPIG 255

Query: 729  MIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGH 908
             I+YPGVAKGLYVAS SGKPALS V VLERD + N TLVQVEIQSGRPHQIRIHLSFIG+
Sbjct: 256  TIKYPGVAKGLYVASPSGKPALSSVRVLERDSESNCTLVQVEIQSGRPHQIRIHLSFIGY 315

Query: 909  PLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKN 1088
            PL+GDPLYV+GG P  F  E  D+   +DGGY RP  PVPGDCGY LHAH++ + HP  N
Sbjct: 316  PLIGDPLYVSGGQPKCFHPELLDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITN 375

Query: 1089 EVMKITAPLPSILQTKEE 1142
            E++KITAPLP+ILQT++E
Sbjct: 376  ELIKITAPLPAILQTRDE 393


>ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like [Glycine max]
          Length = 371

 Score =  468 bits (1205), Expect = e-129
 Identities = 228/373 (61%), Positives = 282/373 (75%)
 Frame = +3

Query: 27   TTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITI 206
            T+ ++ G PWP+ N GL+Y D V+ S++G+TLI+FYS  +K+SAP QGWLQRI++GQIT+
Sbjct: 2    TSRKKFGIPWPECNDGLSYDDVVRASDAGATLIEFYSTKYKSSAPLQGWLQRIKSGQITV 61

Query: 207  DGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLF 386
            DG +VTD +TVLR GS+L+YHRLPWKEPDAP++I+VLYEDDD +ALNKPSGLQVLPGGL+
Sbjct: 62   DGGVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLY 121

Query: 387  QQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXX 566
            QQRT+L+QLQW                     HPVPVHRLGRGTSGIL+C          
Sbjct: 122  QQRTILTQLQWEANNQGTCEMHKRL-------HPVPVHRLGRGTSGILLCAKTKLARARL 174

Query: 567  XXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPG 746
              +FADGTS V  +R  +        + KI K+YRALVSGI++ D+V I QPIG+++YPG
Sbjct: 175  ASHFADGTSHVGGKRDTKQE------LGKIAKMYRALVSGIVENDKVTINQPIGIVKYPG 228

Query: 747  VAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDP 926
            VAKGLYVAS SGKPALS V++LE + Q N+TLVQV+IQSGRPHQIRIHLSFIGHPLLGDP
Sbjct: 229  VAKGLYVASESGKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDP 288

Query: 927  LYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKIT 1106
            LY  GG P     +  D+   +DGGY RP+KPVPGDCGYYLHAH++V+ HPT NE+++I 
Sbjct: 289  LYGVGGQPKCLDCDFVDESFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIEII 348

Query: 1107 APLPSILQTKEES 1145
            APLPS L T EE+
Sbjct: 349  APLPSALHTAEEA 361


>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
            tuberosum]
          Length = 374

 Score =  468 bits (1204), Expect = e-129
 Identities = 235/379 (62%), Positives = 283/379 (74%)
 Frame = +3

Query: 6    AEEEKAQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRI 185
            +E+ +        G  WP+ N+GLTY D V+ +++G  LI+FY + +KNSAP QGWLQRI
Sbjct: 2    SEKAELAVVTAYFGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRI 61

Query: 186  RNGQITIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQ 365
            +N QITIDG++V  PDT LR G+ELVYHRLPW+EPDAPYL+EVL++DD  + +NKPSGLQ
Sbjct: 62   QNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQ 121

Query: 366  VLPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXX 545
            VLPGGL+QQRTVL+QLQW              +   Q  HPVPVHRLGRGTSGIL+C   
Sbjct: 122  VLPGGLYQQRTVLTQLQWHACKPTTT------SSGCQKTHPVPVHRLGRGTSGILLCAKT 175

Query: 546  XXXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPI 725
                     YFA+GTSVV + +C   TN     +RKI K+YRALVSG++D DEVVI+QPI
Sbjct: 176  KLCKSRLAAYFAEGTSVVED-KC---TNSECNTMRKICKIYRALVSGVMDMDEVVIKQPI 231

Query: 726  GMIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIG 905
            G I+YPGVAKGLYVAS SGKPALS V VLERD + N TLVQVEIQSGRPHQIRIHLSFIG
Sbjct: 232  GTIKYPGVAKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIG 291

Query: 906  HPLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTK 1085
            +PL+GDPLYV+GG P  F  E  D+   +DGGY RP  PVPGDCGY LHAH++ + HP  
Sbjct: 292  YPLIGDPLYVSGGQPKCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPIT 351

Query: 1086 NEVMKITAPLPSILQTKEE 1142
            NE++KITAPLP+ILQT+EE
Sbjct: 352  NELIKITAPLPAILQTREE 370


>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  467 bits (1202), Expect = e-129
 Identities = 231/368 (62%), Positives = 279/368 (75%)
 Frame = +3

Query: 42   LGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQIV 221
            +G PWPD N GL Y D V+  +SG +LI FYS  +K+SAP +GWLQRI+N QITIDG+++
Sbjct: 10   IGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVI 69

Query: 222  TDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRTV 401
            TDP+T+LR GS+LVY RLPWKEPD PYL+E+LYED++ +ALNKPSGLQVLPGG+FQQRTV
Sbjct: 70   TDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTV 129

Query: 402  LSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYFA 581
            L+QLQW                 ++  HPVPVHRLGRGTSGIL+C            YFA
Sbjct: 130  LTQLQWWSSKQSFSV--------SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181

Query: 582  DGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKGL 761
            +GTS V   R   N+ M     RKI K+YRALV+GII  DEV ++QPIG ++YPGVA+GL
Sbjct: 182  EGTSSVRRNR---NSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGL 238

Query: 762  YVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAG 941
            YVA+ SGKPA SKVNVLERD Q  +TLVQVEIQSGRPHQIRIHLS IGHPLLGDPLYVAG
Sbjct: 239  YVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAG 298

Query: 942  GCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPLPS 1121
            G P+   SE  +    +DGGY RP+KPVPGDCGYYLHAH+++++HP  NEV+KI APLP 
Sbjct: 299  GQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLPP 358

Query: 1122 ILQTKEES 1145
            IL+T+ E+
Sbjct: 359  ILRTRIEA 366


>gb|EYU39826.1| hypothetical protein MIMGU_mgv1a008941mg [Mimulus guttatus]
          Length = 357

 Score =  466 bits (1199), Expect = e-128
 Identities = 231/362 (63%), Positives = 274/362 (75%)
 Frame = +3

Query: 45   GFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQIVT 224
            G PWP+FN G+ Y+D ++ S+ G+TLI+FYS+ +++SAP  GWLQRI N QIT++G +VT
Sbjct: 5    GDPWPEFNDGIYYRDLLRPSDDGATLIEFYSRKYQSSAPLHGWLQRIHNKQITVNGGVVT 64

Query: 225  DPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRTVL 404
            DP+T+LRGG+ELVYHRLPWKEPDAP+L+E+LYEDDD +ALNKPSGLQVLPGGLFQQRTVL
Sbjct: 65   DPNTILRGGAELVYHRLPWKEPDAPHLVEILYEDDDVIALNKPSGLQVLPGGLFQQRTVL 124

Query: 405  SQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYFAD 584
            +QLQ                   Q PHPVPVHRLGRGTSGIL+C            +FAD
Sbjct: 125  TQLQRHAGG-------------CQEPHPVPVHRLGRGTSGILLCAKTKLAKSRLAAFFAD 171

Query: 585  GTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKGLY 764
            GTSVV    C EN      + R I K+YRAL SGII +DEVVI+QPIG+++YPGVA GLY
Sbjct: 172  GTSVVGV--CRENDQQQK-STRNITKLYRALASGIIIEDEVVIDQPIGLVKYPGVANGLY 228

Query: 765  VASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAGG 944
            VAS SGKPA SKV VLER+   N+TLVQVEIQSGRPHQIRIHLSFIGHPL+GDPLY  GG
Sbjct: 229  VASPSGKPAWSKVVVLERNMLNNSTLVQVEIQSGRPHQIRIHLSFIGHPLIGDPLYSTGG 288

Query: 945  CPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPLPSI 1124
             P     E  D    +DGGY RP KPVPGDCGY+LHAHR++  HP  NE+++ITAPLPSI
Sbjct: 289  QPKCSDHELVDQSFAEDGGYERPEKPVPGDCGYHLHAHRVLFTHPVSNEIIEITAPLPSI 348

Query: 1125 LQ 1130
            L+
Sbjct: 349  LR 350


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  466 bits (1199), Expect = e-128
 Identities = 230/368 (62%), Positives = 279/368 (75%)
 Frame = +3

Query: 42   LGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRIRNGQITIDGQIV 221
            +G PWPD N GL Y D V+  +SG +LI FYS  +K+SAP +GWLQRI+N QITIDG+++
Sbjct: 10   IGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVI 69

Query: 222  TDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQRTV 401
            TDP+T+LR GS+LVY RLPWKEPD PYL+E+LYED++ +ALNKPSGLQVLPGG+FQQRTV
Sbjct: 70   TDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTV 129

Query: 402  LSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXXYFA 581
            L+QLQW                 ++  HPVPVHRLGRGTSGIL+C            YFA
Sbjct: 130  LTQLQWWSSKQSFSV--------SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181

Query: 582  DGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVAKGL 761
            +GTS V   R   N+ M     RKI K+YRALV+GII  DEV ++QPIG ++YPGVA+GL
Sbjct: 182  EGTSSVRRNR---NSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGL 238

Query: 762  YVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAG 941
            YVA+ SGKPA SKVNVLERD Q  +TLVQVEIQSGRPHQIRIHLS IGHPL+GDPLYVAG
Sbjct: 239  YVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPLYVAG 298

Query: 942  GCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTKNEVMKITAPLPS 1121
            G P+   SE  +    +DGGY RP+KPVPGDCGYYLHAH+++++HP  NEV+KI APLP 
Sbjct: 299  GQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLPP 358

Query: 1122 ILQTKEES 1145
            IL+T+ E+
Sbjct: 359  ILRTRIEA 366


>ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Solanum
            tuberosum] gi|565360441|ref|XP_006346976.1| PREDICTED:
            RNA pseudouridine synthase 5-like isoform X2 [Solanum
            tuberosum]
          Length = 379

 Score =  462 bits (1188), Expect = e-127
 Identities = 235/384 (61%), Positives = 283/384 (73%), Gaps = 5/384 (1%)
 Frame = +3

Query: 6    AEEEKAQTTLERLGFPWPDFNQGLTYKDNVQLSESGSTLIDFYSKNHKNSAPYQGWLQRI 185
            +E+ +        G  WP+ N+GLTY D V+ +++G  LI+FY + +KNSAP QGWLQRI
Sbjct: 2    SEKAELAVVTAYFGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRI 61

Query: 186  RNGQITIDGQIVTDPDTVL-----RGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNK 350
            +N QITIDG++V  PDT L     R G+ELVYHRLPW+EPDAPYL+EVL++DD  + +NK
Sbjct: 62   QNKQITIDGKVVILPDTELSFWMCRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNK 121

Query: 351  PSGLQVLPGGLFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGIL 530
            PSGLQVLPGGL+QQRTVL+QLQW              +   Q  HPVPVHRLGRGTSGIL
Sbjct: 122  PSGLQVLPGGLYQQRTVLTQLQWHACKPTTT------SSGCQKTHPVPVHRLGRGTSGIL 175

Query: 531  ICXXXXXXXXXXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVV 710
            +C            YFA+GTSVV + +C   TN     +RKI K+YRALVSG++D DEVV
Sbjct: 176  LCAKTKLCKSRLAAYFAEGTSVVED-KC---TNSECNTMRKICKIYRALVSGVMDMDEVV 231

Query: 711  IEQPIGMIRYPGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIH 890
            I+QPIG I+YPGVAKGLYVAS SGKPALS V VLERD + N TLVQVEIQSGRPHQIRIH
Sbjct: 232  IKQPIGTIKYPGVAKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIH 291

Query: 891  LSFIGHPLLGDPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVV 1070
            LSFIG+PL+GDPLYV+GG P  F  E  D+   +DGGY RP  PVPGDCGY LHAH++ +
Sbjct: 292  LSFIGYPLIGDPLYVSGGQPKCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGL 351

Query: 1071 HHPTKNEVMKITAPLPSILQTKEE 1142
             HP  NE++KITAPLP+ILQT+EE
Sbjct: 352  IHPITNELIKITAPLPAILQTREE 375


>ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Capsella rubella]
            gi|482559998|gb|EOA24189.1| hypothetical protein
            CARUB_v10017427mg [Capsella rubella]
          Length = 382

 Score =  447 bits (1151), Expect = e-123
 Identities = 226/377 (59%), Positives = 280/377 (74%), Gaps = 4/377 (1%)
 Frame = +3

Query: 36   ERLGFPWPDFNQGLTYKDNVQLSESGSTLI-DFYSKNHKNSAPYQGWLQRIRNGQITIDG 212
            +R+G PWP+ N GL YKD V  SES  T + DFY   +K+SAP  GW+QRI+NGQI IDG
Sbjct: 9    QRIGLPWPEHNDGLEYKDVVSSSESELTTVSDFYFTKYKSSAPLLGWIQRIQNGQIQIDG 68

Query: 213  QIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGGLFQQ 392
            ++V DP TVLR GS+LVYHRLPWKEPD PY +E+LYEDDD +ALNKPSGLQVLPGGLFQQ
Sbjct: 69   EVVKDPKTVLRSGSKLVYHRLPWKEPDTPYSLEILYEDDDLIALNKPSGLQVLPGGLFQQ 128

Query: 393  RTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXXXXXX 572
            RT+L+QLQW              +P++   HPVPVHRLGRGTSGIL+C            
Sbjct: 129  RTLLTQLQW----WFGKKDFSTGSPES---HPVPVHRLGRGTSGILLCAKTKLAKTKLAA 181

Query: 573  YFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRYPGVA 752
            YFA+GTS+V +    ++   G    RK+ K+YRAL  GI+++DEVVI+QPIG++RYPGVA
Sbjct: 182  YFAEGTSLVGSGNLDQDCGTG----RKLSKIYRALADGIVEEDEVVIQQPIGVVRYPGVA 237

Query: 753  KGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLY 932
            KGLYVAS  GKPA SKV VLERD + + TLV+VEIQSGRPHQIRIHL++IGHPL+GDPLY
Sbjct: 238  KGLYVASPEGKPAFSKVVVLERDREKSCTLVKVEIQSGRPHQIRIHLAYIGHPLIGDPLY 297

Query: 933  VAGGCPSGFASESKDDDC--TQDGGYPRPSKPVPGDCGYYLHAHRM-VVHHPTKNEVMKI 1103
            VAGG P  F ++   DD    +DGGY RP++PVPGDCGYYLHAH++ +++    ++V+KI
Sbjct: 298  VAGGQPKCFDTDLVADDAAFAEDGGYRRPNQPVPGDCGYYLHAHQVDLLNLLNTHQVVKI 357

Query: 1104 TAPLPSILQTKEESSPR 1154
             APLP ILQT  E+  +
Sbjct: 358  VAPLPPILQTSSEAEEK 374


>ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutrema salsugineum]
            gi|557104939|gb|ESQ45273.1| hypothetical protein
            EUTSA_v10010446mg [Eutrema salsugineum]
          Length = 382

 Score =  443 bits (1140), Expect = e-122
 Identities = 224/376 (59%), Positives = 276/376 (73%), Gaps = 4/376 (1%)
 Frame = +3

Query: 30   TLERLGFPWPDFNQGLTYKDNVQLSESGS---TLIDFYSKNHKNSAPYQGWLQRIRNGQI 200
            +L+R+G PWP+ N GL YKD V    S S   T+ DFYS  +K+SAP  GW+QRI+NGQI
Sbjct: 7    SLKRIGLPWPELNDGLAYKDVVSSFSSSSELTTVSDFYSTKYKSSAPLLGWIQRIQNGQI 66

Query: 201  TIDGQIVTDPDTVLRGGSELVYHRLPWKEPDAPYLIEVLYEDDDFVALNKPSGLQVLPGG 380
             IDG++V D +T+LR GS+LVYHRLPWKEPD PY +EVLYED+D +ALNKPSGLQVLPGG
Sbjct: 67   QIDGEVVKDHNTLLRRGSKLVYHRLPWKEPDTPYSLEVLYEDNDLIALNKPSGLQVLPGG 126

Query: 381  LFQQRTVLSQLQWRVXXXXXXXXXXXXTPDAQVPHPVPVHRLGRGTSGILICXXXXXXXX 560
            LFQQRT+L+QLQW              +  A+  HPVPVHRLGRGTSGIL+C        
Sbjct: 127  LFQQRTLLTQLQW-------CFSKKDSSTGARESHPVPVHRLGRGTSGILLCAKTKLAKT 179

Query: 561  XXXXYFADGTSVVANQRCAENTNMGPCAVRKILKVYRALVSGIIDKDEVVIEQPIGMIRY 740
                YFA+GTS+V      +    G    RKI K+YRAL  GI+++DEVVI+QPIG++RY
Sbjct: 180  KLASYFAEGTSLVGFGNLDQECGTG----RKISKIYRALADGIVEEDEVVIKQPIGVVRY 235

Query: 741  PGVAKGLYVASLSGKPALSKVNVLERDFQGNNTLVQVEIQSGRPHQIRIHLSFIGHPLLG 920
            PGVAKGLYVAS  GKPALSKV VLER+ Q N TLV+VEIQSGRPHQIRIHL+++GHPL+G
Sbjct: 236  PGVAKGLYVASSEGKPALSKVAVLERNMQRNCTLVKVEIQSGRPHQIRIHLAYMGHPLVG 295

Query: 921  DPLYVAGGCPSGFASESKDDDCTQDGGYPRPSKPVPGDCGYYLHAHRMVVHHPTK-NEVM 1097
            DPLYVAGG P  F  ++ D    +DGGY RP++ VPGDCGY+LHAH++ + +    N+V+
Sbjct: 296  DPLYVAGGKPKCFDPDAVDSAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNLNKVV 355

Query: 1098 KITAPLPSILQTKEES 1145
            K+ APLP ILQT  E+
Sbjct: 356  KVVAPLPPILQTSSEA 371