BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00018728
         (1949 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   724   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   712   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   709   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   706   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   703   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   702   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   698   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   696   0.0  
ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phas...   694   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   691   0.0  
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   689   0.0  
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...   686   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   684   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   684   0.0  
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops...   684   0.0  
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha...   684   0.0  
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...   682   0.0  
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr...   678   0.0  
dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]     676   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   676   0.0  

>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  724 bits (1869), Expect = 0.0
 Identities = 356/569 (62%), Positives = 438/569 (76%), Gaps = 2/569 (0%)
 Frame = +1

Query: 247  MEPTGNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPI 426
            ME  G+EK+    +VTQ+S+GGF ++V A EL+ +LED +G + RCRLK S TPP+SYP 
Sbjct: 1    MESEGSEKDM---VVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPD 57

Query: 427  FDVASVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENP 606
            F++      +RT++Y+KVEPHAFVHF SPEA T AL+AAG+ EL L+G PLKVSLGPE P
Sbjct: 58   FEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETP 117

Query: 607  FFINKRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQE 786
            F +N+R+RT   FKF +V +E G LV   E++ GW+ P+SGVD +VDPFD TC+  FT++
Sbjct: 118  FHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKD 177

Query: 787  AAFLFKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDI 966
             AF FK   K  +IKC+FK+EFLVREI E++Q  +             P ++YRTA+DDI
Sbjct: 178  TAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDI 237

Query: 967  HVTVPFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIP-- 1140
              TVPFDLLDDDDPWIRTTDFT+ GAIGRCNS RISI PRYG KLK AMDYL+ R++   
Sbjct: 238  EETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVL 297

Query: 1141 NESLRKQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVE 1320
             +S + QL VRDEPD   G+P+S+PFF IQ K  + F +M+LVNA MHKGIINQHQLS +
Sbjct: 298  EDSPKWQLRVRDEPD--FGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDK 355

Query: 1321 FFELLRSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEV 1500
            FF+LLRSQ +++NIAAL+HICS + PV D Y++LKLV +WLLKNP+ + S +  DD  EV
Sbjct: 356  FFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEV 415

Query: 1501 RKLVITPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIV 1680
            R+LVITP+KAYCLPP VELSNRVLR YKEVSDRFLRVTF DEGMQ + +NVLNYY+APIV
Sbjct: 416  RRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIV 475

Query: 1681 KEVTSNSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVS 1860
            K +TSNSF QKT VF RV +I+ +GF LC RKY+FLAFS+NQLRD SAWFFAED K  V 
Sbjct: 476  KVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVR 535

Query: 1861 DVKRWMGKFTDRNVAKCSARMGLCFSSIY 1947
             +K WMGKFT+RNVAKC+ARMG CFSS Y
Sbjct: 536  AIKSWMGKFTNRNVAKCAARMGQCFSSTY 564


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  712 bits (1838), Expect = 0.0
 Identities = 339/561 (60%), Positives = 428/561 (76%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E   KET+VTQVSLGGF  HV A +L  +LE ++G++WRCRLK SWTPP+SYP F++  +
Sbjct: 4    EGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDI 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
                RT++Y +VEPHAFVHFA P++ T A++AA R EL LN   LK SLGPENPF +N+R
Sbjct: 64   TKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +R    FK S VGVE GTLV   EF+VGW+ P +GVD +VDPFD TCR  F++  AF FK
Sbjct: 124  RRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
             T +  +IKCDFK+EFLVR+I EIKQ                P ++YRTA+DDI V+VPF
Sbjct: 184  STAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRC+S R+SI PR+G KL+ A+D+LK+R++  E LR+ +
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPI 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             +RDEPD   GMP+++PFF I  K  ++F++++LVNA MHKGI NQHQLS +FF+LLR+Q
Sbjct: 304  RIRDEPD--FGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQ 361

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
              E+N+AAL+HI   +RPV D Y+KLK+ QEWLLKNP+   + +  DD AE+R+LVITPT
Sbjct: 362  PTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPT 421

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYCLPP VELSNRVLR+YK+V+DRFLRVTF DEG+Q + SN LNY+ APIV+ +TS SF
Sbjct: 422  KAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSF 481

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
             QKT +F RV SI+ EGF LC R+Y+FLAFS+NQLRD SAWFFAED  + V  +K WMGK
Sbjct: 482  PQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGK 541

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            FT++N+AKC+ARMG CFSS Y
Sbjct: 542  FTNKNIAKCAARMGQCFSSTY 562


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  709 bits (1831), Expect = 0.0
 Identities = 339/561 (60%), Positives = 426/561 (75%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            ++ +KET+VTQVS GGF K V A +L  +L++++G +WRCRLK SWTPP+SYP F++   
Sbjct: 4    KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDT 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
               QR D Y +VEPHAFVHFASP++ T A NAAG  EL  NG P+KVSLGPENPF +N+R
Sbjct: 64   AVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+V VE GTLV   EF VGW+ P SGVD +VDPFD  C+  FT++ AF FK
Sbjct: 124  RRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
             T +  +I+CDFKLEFLVR+I EIKQ  +             P ++YRTA+DDI V VPF
Sbjct: 184  GTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCNS R+SI PR+G KLK A+++L++R++  + LR+ L
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPL 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             V  EP+ +  MP+S+PFF I  +  + F +M+LVNA MHKGI NQHQLS  FF+LLR+Q
Sbjct: 304  HVTAEPEYE--MPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQ 361

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
              ++NIAALRHICS K PV D +++LK VQ+WLLKNP+   S +  DD  E+R+L ITPT
Sbjct: 362  PLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPT 421

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            +AYCLPP VELSNRVLRRYK+++D+FLRVTF DEG+Q + +N L YY APIV+++TSNSF
Sbjct: 422  RAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSF 481

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
            SQKT +F RV SI+ +GF LC RKY+FLAFS+NQLRD SAWFFAED K  VS ++ WMGK
Sbjct: 482  SQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGK 541

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            FT+RN+AKC+ARMG CFSS Y
Sbjct: 542  FTNRNIAKCAARMGQCFSSTY 562


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  706 bits (1823), Expect = 0.0
 Identities = 344/561 (61%), Positives = 428/561 (76%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E  +  ++VTQVS GGF  H  A +L  +LED++G+++RCRLK SWTPP+S+P F++ + 
Sbjct: 4    EGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTA 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
            +  +RTD+Y +VEPHAFVHF SP++VT A++AAGR EL  N  PLKVSLGPENP+F+N+R
Sbjct: 64   D-VKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRR 122

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+V VE G+LV + EF+  W+ P  GVD IVDPFD TC+  FT + AF FK
Sbjct: 123  RRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFK 182

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
             TKK  +IKCDFK+EFLVREIAEIKQ  +             P + YRTA+DDI  +VPF
Sbjct: 183  GTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPF 242

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCNS R+ I PR+G KLK AM+YL++R++    ++   
Sbjct: 243  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPP 302

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             ++DEPD   GM  + PFF IQ +  +SFEIM+LVNA MHKG +NQHQLS  FF LLRSQ
Sbjct: 303  KIQDEPD--FGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
             +E+N+AAL+H+CS + PV D  E+LK+VQ+WLLKNP+ +   +  DD AEVR+LVITPT
Sbjct: 361  PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYCLPP VELSNRVLR+YKEV+DRFLRVTF DEGMQK+ SNVLNYY+APIVKE+TSNSF
Sbjct: 421  KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
             QKT+VF R  +I+ +GF LC RKYTFLAFS+NQLRD SAWFFAE   + V  +  WMGK
Sbjct: 481  LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            F ++NVAKC+ARMG CFSS Y
Sbjct: 541  FNNKNVAKCAARMGQCFSSTY 561


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  703 bits (1814), Expect = 0.0
 Identities = 334/564 (59%), Positives = 427/564 (75%), Gaps = 3/564 (0%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E   KET+VTQVS+GGF  HV A +L  +L+  +G++WRCRLK SWTPP+SYP F++  +
Sbjct: 4    EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
               +RT++Y +V PHAFVHFA P++ T A+NA+GR EL LN   LKVSLGP+NPF +N+R
Sbjct: 64   TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+VG E G LV   EF+VGW+ P SGVD +VDPFD TC+  F++  AF  K
Sbjct: 124  RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
             T +  +IKCDFK+EFLVR+I EI Q                P ++YRTA+DDI   VPF
Sbjct: 184  STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIP---NESLR 1155
            DLLDDDDPWIRTTDFT  GAIGRC+S R+SI PR+G KL+ A+ YLK+R++     E+ R
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303

Query: 1156 KQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELL 1335
            +++ + DEPD   GMP+S+PFF I  K  ++FE+++LVNA MHKGI NQHQLS +FF+LL
Sbjct: 304  RRIRILDEPD--FGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLL 361

Query: 1336 RSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVI 1515
            R+Q  E+N++AL+HIC+ +RPV + Y +LK VQEWLLKNP    + +   D  E+R+LVI
Sbjct: 362  RNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVI 421

Query: 1516 TPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTS 1695
            TPTKAYCLPP VELSNRVLR+YK+V+DRFLRVTF DEG+Q++ SNVLNYY+APIV+++TS
Sbjct: 422  TPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITS 481

Query: 1696 NSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRW 1875
            NSF QKT +F RV SI+ EGF LC R+Y+FLAFS NQLRD SAWFF+E+  + V DVK W
Sbjct: 482  NSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSW 541

Query: 1876 MGKFTDRNVAKCSARMGLCFSSIY 1947
            MGKFT+RN+AKC+ARMG CFSS Y
Sbjct: 542  MGKFTNRNIAKCAARMGQCFSSTY 565


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  702 bits (1811), Expect = 0.0
 Identities = 335/561 (59%), Positives = 429/561 (76%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E  +K+++VTQ+S+GGFG  V A +L N+LEDK+G+++RCRLK SWTPP+SYP F++   
Sbjct: 4    EGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDT 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
             N +RTDNY+KVEPHAFVHFASPE+VT ALNA+G  +L L   PLKVS GPENP+F+N+R
Sbjct: 64   ANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+V VE GTLV   EF+V W+ P  GV  +VDPFD  CR  F+++ AF FK
Sbjct: 124  RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
              +K  +IKCDF++ FLVR+I EIK+ N+             P ++YRTA+DDI  +VPF
Sbjct: 184  GIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCN  RISI PR+G KL  AM YLK +++  + L  + 
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQ 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             +R   +PD G+P+S+ FFYI  ++ ++F+IM+LVNA +HKGI NQH+LS  FFELL++Q
Sbjct: 304  TLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQ 363

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
             +ELN+AAL+H+CS KRPV D  ++LK+VQEWLL+NP+     +  DD  EVR+LVITP+
Sbjct: 364  PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPS 423

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYC+PP VELSNRVLR+++EVSD FLRVTF DEGMQ +  N LNYY+APIVKE+TSNSF
Sbjct: 424  KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
            SQ+T ++ RV +I+ +GF  C RKY+FLAFS+NQLRD SAWFFAE DK+R  D++ WMGK
Sbjct: 484  SQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNWMGK 542

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            F  RNVAKC+ARMG CFSS Y
Sbjct: 543  FNQRNVAKCAARMGQCFSSTY 563


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  698 bits (1801), Expect = 0.0
 Identities = 342/561 (60%), Positives = 424/561 (75%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E   KET+VTQVS+GGF +HV A +L  +LE++VG++WRCRLK SWTPP+SYP F++   
Sbjct: 4    EGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDT 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
               QR DNY+KVEPHAFVHFASP+AVT A++AAGR EL  N   LKVSLGPENP+++N+R
Sbjct: 64   TVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +R    FK  +V +E GTL    EF VGW+ P SGV+ +VDPFD TC+  F+++ AF FK
Sbjct: 124  RRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
             T +  +IKCDFK+EFLVREI E+KQ +              P ++YRTA+DD   TVPF
Sbjct: 184  GTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
             LLDDDD WIRTTDFT  GAIGRCN+ R+ + PR+GLKLK AMDYL++R++P E LR QL
Sbjct: 244  GLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQL 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             +RDEPD   G  +S+ F+YI  K  + FEIM+LVNA +HKGI NQHQLS++FF LLR+Q
Sbjct: 304  RIRDEPD--FGRSMSDHFYYIY-KEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQ 360

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
            + E+N+AAL+HI S + PV D YE+LK V +WLLKNP+   S    DD  E+R+LVITPT
Sbjct: 361  SMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPT 420

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYCL P VELSNRVLR+YK+V+DRFLRVTF DEGMQ + +NVL YY A IV++VTS SF
Sbjct: 421  KAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSF 480

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
            SQKT VF RV SI+ +GF LC RKY+FLAFS NQLRD +AWFFAED K+ V  +  WMGK
Sbjct: 481  SQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGK 540

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            FT+RN+AKC+ARMG CFSS Y
Sbjct: 541  FTNRNIAKCAARMGQCFSSTY 561


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  696 bits (1795), Expect = 0.0
 Identities = 332/561 (59%), Positives = 426/561 (75%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E  +K ++VTQ+S+GGFG  V A +L N+LEDK+G+++RCRLK SWTPP+SYP F +   
Sbjct: 4    EGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDT 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
               +RT++Y+KVEPHAFVHFASPE+VT ALNA+G  +L L   PLKVS GP+NP+F+N+R
Sbjct: 64   AKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+V VE GTLV   EF+V W+ P  GV  +VDPFD  CR  F+++ AF FK
Sbjct: 124  RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
               K  +IKCDF++ FLVR+I EI++ N+             P ++YRTA+DDI  +VPF
Sbjct: 184  GIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCN  RISI PR+G KL  AM YLK +++  + L  + 
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQ 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             +R + +PD GMP+S+ FFY+  ++ ++F+IM+LVNA +HKGI NQH+LS  FFELLR+Q
Sbjct: 304  TLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQ 363

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
             +ELN+AAL+H+CS KRPV D  ++LK+VQEWLL+NP+     +  DD  EVR+LV+TP+
Sbjct: 364  PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPS 423

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYC+PP VELSNRVLR+++EVSD FLRVTF DEGMQ +  N LNYY+APIVKE+TSNSF
Sbjct: 424  KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
            SQKT ++ RV +I+ EGF  C RKY+FLAFS+NQLRD SAWFFAE DK+R  D++ WMGK
Sbjct: 484  SQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNWMGK 542

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            F  RNVAKC+ARMG CFSS Y
Sbjct: 543  FNQRNVAKCAARMGQCFSSTY 563


>ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
            gi|561010117|gb|ESW09024.1| hypothetical protein
            PHAVU_009G093700g [Phaseolus vulgaris]
          Length = 1204

 Score =  694 bits (1792), Expect = 0.0
 Identities = 335/561 (59%), Positives = 425/561 (75%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E  +K+++VTQ+S+GGFG  V A EL N+LEDK+G+++RCRLK SWTPP+SYP F++   
Sbjct: 4    EASEKDSVVTQISIGGFGSEVKASELVNYLEDKIGLVYRCRLKTSWTPPESYPEFNITDT 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
               + TD+Y+KVEPHAFVHFASPE+VT ALNA+GR +L L   PLKVS GPENP+F+NKR
Sbjct: 64   AKIKGTDDYKKVEPHAFVHFASPESVTAALNASGRCDLFLKNEPLKVSCGPENPYFLNKR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK S+V VE GTLV   EF+V WK P  GV  +VDPFD  CR  FT++ AF FK
Sbjct: 124  RRTTIPFKMSDVIVEIGTLVSPGEFFVAWKGPDKGVKFLVDPFDGMCRFCFTRDIAFPFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
              +K  +IKCDF++ FLVR+I EI++ N+             P ++YRTA DDI   VPF
Sbjct: 184  GIEKEAVIKCDFQVGFLVRDINEIRRYNDSSYLVVLLHLASSPWVWYRTAEDDIEDLVPF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCN  +ISI PR+G KL  AM YLK +++  + L  + 
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQMQELPLKQ 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             +R   +PD G P+SNPFFYI  +  ++F+IM+LVNA +HKGI NQH+LS  FFELLR+Q
Sbjct: 304  TLRALNEPDFGTPMSNPFFYIDYQVGITFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQ 363

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
             +ELN+AAL+H+CS KRPV D  ++LK+VQEWLL+NP+     +  DD  EVR+LVITP+
Sbjct: 364  PKELNVAALKHLCSYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVRRLVITPS 423

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYC+PP VELSNRVLR+++EVSD FLRVTF DEGMQ +  N LNYY+APIVKE+TSN+F
Sbjct: 424  KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNTF 483

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
            SQKT ++ RV +I+ EGF  C RKY+FLAFS+NQLRD SAWFFAE +K++  +++ WMGK
Sbjct: 484  SQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-EKMKCDEIRSWMGK 542

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            F  +NVAKC+ARMG CFSS Y
Sbjct: 543  FNQKNVAKCAARMGQCFSSTY 563


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  691 bits (1783), Expect = 0.0
 Identities = 337/567 (59%), Positives = 424/567 (74%)
 Frame = +1

Query: 247  MEPTGNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPI 426
            ME  G+EK+   T+VTQVS+GGFG+HV A +L  + +++VGV+WRCRLK SWTPP+SYP 
Sbjct: 1    MESQGSEKD---TVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPN 57

Query: 427  FDVASVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENP 606
            F++      QRTD+Y+KVEPHAFVHFASP   T A++AAGR EL+ N   LKVSLGPENP
Sbjct: 58   FEILDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENP 117

Query: 607  FFINKRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQE 786
            +++N+R+R    FK S+V ++ G +V   EF+VGW+ P  GVD +VDPFD TC+  F+++
Sbjct: 118  YYLNRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRD 177

Query: 787  AAFLFKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDI 966
             AF FK T +  +IKCDFK+EFLVR+I EIKQ                P ++YRTA+D+I
Sbjct: 178  TAFSFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEI 237

Query: 967  HVTVPFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNE 1146
              +VPFDLLDDDD WIRTTDFT  GAIGRCN+ R+ I PR+G KLK A+DYL+++++P +
Sbjct: 238  EESVPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMD 297

Query: 1147 SLRKQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFF 1326
             +R  L + DEPD   G  +S+PF+ I  K  + FEIM+LVNA MHKGI NQHQLS +FF
Sbjct: 298  YVRWPLRISDEPD--FGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFF 355

Query: 1327 ELLRSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRK 1506
             LLR Q RE+N+AAL+HI S +RPV D Y++LK V +WLL+NP    S +  DD  E+R+
Sbjct: 356  NLLRDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRR 415

Query: 1507 LVITPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKE 1686
            LVITPTKA+CL P VELSNRVLR+YKEV+DRFLRVTF DEGMQ + +NVL YY A IV++
Sbjct: 416  LVITPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRD 475

Query: 1687 VTSNSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDV 1866
            VTS  FSQKT VF RV SI+ +GF LC RKY+FLAFS NQLRD SAWFFAED K  V  +
Sbjct: 476  VTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQI 535

Query: 1867 KRWMGKFTDRNVAKCSARMGLCFSSIY 1947
             RWMGKFT+RN+AKC+ARMG CFSS Y
Sbjct: 536  LRWMGKFTNRNIAKCAARMGQCFSSTY 562


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  689 bits (1779), Expect = 0.0
 Identities = 327/563 (58%), Positives = 429/563 (76%)
 Frame = +1

Query: 259  GNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVA 438
            G+E   K ++VTQVS+GGFG+   A +L+++LED++G++WRCRLK SWTPP SYP F++A
Sbjct: 2    GSEGSMKNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIA 61

Query: 439  SVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFIN 618
               +  + D+Y+KVEPHAFVHFA PE+  RA++AAG+  LIL+G PLKVSLGP+NP+ +N
Sbjct: 62   DTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLN 121

Query: 619  KRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFL 798
            +R+RT   +K + + +E GTLV   EF V W+A   GVD +VDPFDNTC+  F +  AF 
Sbjct: 122  QRRRTTTPYKLAGISLEIGTLVSRDEFLVSWRA--DGVDFLVDPFDNTCKFCFRKSTAFS 179

Query: 799  FKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTV 978
            FKD     +I CD+KLE LVR+I  ++Q  N             P ++YRTA+DDIH T+
Sbjct: 180  FKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDTI 239

Query: 979  PFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRK 1158
            P DLLDDDDPWIRTTDFT  GAIGRC+S R+ ISPRY  KL  A++YL+ R++  E +R 
Sbjct: 240  PVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRW 299

Query: 1159 QLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLR 1338
               +R+EP    G P+S+ FF I  K  +SFEIM+LVN+ +H+G+ NQ QL+  FF+LLR
Sbjct: 300  PPRIRNEPC--FGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 357

Query: 1339 SQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVIT 1518
            +Q +++NIA+L+H+C+ KRPV D Y++LKLVQEW+LKNP+ +G     +D +E+R+LVIT
Sbjct: 358  NQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVIT 417

Query: 1519 PTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSN 1698
            PT+AYCLPP VELSNRVLR+Y+ V++RFLRVTF DE MQ + SNVL+Y++APIVK++TS+
Sbjct: 418  PTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 477

Query: 1699 SFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWM 1878
            SFSQKT VF RV SI+ +GF+LC RKY+FLAFS NQLRD SAWFFAED K RVSD+K WM
Sbjct: 478  SFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWM 537

Query: 1879 GKFTDRNVAKCSARMGLCFSSIY 1947
            GKF D+NVAKC+ARMGLCFSS Y
Sbjct: 538  GKFKDKNVAKCAARMGLCFSSTY 560


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score =  686 bits (1771), Expect = 0.0
 Identities = 328/563 (58%), Positives = 427/563 (75%)
 Frame = +1

Query: 259  GNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVA 438
            G+E     ++VTQVS+GGFG+   A +L+++LED+VG++WRCRLKNSWTPP SYP F++A
Sbjct: 2    GSEGNITNSVVTQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEIA 61

Query: 439  SVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFIN 618
               N  R D+Y+KVEPHAFVHFA  E+   A++AAG+ +LIL+G PLKVSLGP+NP+ +N
Sbjct: 62   DTSNIPRIDDYKKVEPHAFVHFALSESTNHAMDAAGQCKLILDGQPLKVSLGPKNPYTLN 121

Query: 619  KRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFL 798
            +R+RT   +K + V +E GTLV   EF V W+A   GV+ +VDPFDNTC+  F++  AF 
Sbjct: 122  QRRRTTTPYKMTGVSLEIGTLVSRDEFLVSWRA--DGVNFLVDPFDNTCKFCFSKSTAFA 179

Query: 799  FKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTV 978
            FKD     +IKCD+KLE LVR+I   +Q  N             P ++YRTA+DDI+ TV
Sbjct: 180  FKDAVMHAVIKCDYKLESLVRDIQTFRQYRNSHGFVLLLQLASSPRVWYRTADDDIYETV 239

Query: 979  PFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRK 1158
            PFDLLDDDDPWIRTTDFT  GAIGRC S R+ ISPRY  KL  A+DYL+ R++  E +R 
Sbjct: 240  PFDLLDDDDPWIRTTDFTQVGAIGRCLSYRVLISPRYDKKLTTALDYLRMRRVQEERVRW 299

Query: 1159 QLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLR 1338
               +RDEP    G P+S+ FF I  +  +SFEIM+LVN+ +H+G+ NQ QL+  FF+LLR
Sbjct: 300  PPRIRDEPC--FGEPVSDHFFCIHHREGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 357

Query: 1339 SQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVIT 1518
            +Q +++N+A+L+H+C+ KRPV D Y++LKLV EW+LKNP+ +GS    +D +E+R+LVIT
Sbjct: 358  NQPKDVNVASLKHLCTYKRPVFDAYKRLKLVHEWILKNPKLLGSHEKSEDISEIRRLVIT 417

Query: 1519 PTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSN 1698
            PT+AYCLPP VEL NRVLR+YK V++RFLRVTF DE MQ + SNVL+Y++APIVK++TS+
Sbjct: 418  PTRAYCLPPEVELPNRVLRKYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 477

Query: 1699 SFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWM 1878
            SFSQKT +F RV +I+ +GF LC RKY+FLAFS NQLRD SAWFFAED K RVSD+K WM
Sbjct: 478  SFSQKTYIFKRVKNILTDGFMLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKTWM 537

Query: 1879 GKFTDRNVAKCSARMGLCFSSIY 1947
            GKF D+NVAKC+ARMGLCFSS Y
Sbjct: 538  GKFKDKNVAKCAARMGLCFSSTY 560


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  684 bits (1765), Expect = 0.0
 Identities = 341/567 (60%), Positives = 427/567 (75%)
 Frame = +1

Query: 247  MEPTGNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPI 426
            MEP G EK     +  QVS GGF ++V A EL  +LE++VG +WRCRLK S TP +SYP 
Sbjct: 1    MEPEGREKL---LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPD 57

Query: 427  FDVASVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENP 606
            F V +    ++TD+YEKVEPHAFVHFA P  VTRA++AAGR EL LNG  LKVSLGPENP
Sbjct: 58   FSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENP 117

Query: 607  FFINKRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQE 786
            F +N+R RT   FK  +V VE GTLV   EF+V W+ PASG D +VDPFD TC+  FT++
Sbjct: 118  FRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRD 177

Query: 787  AAFLFKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDI 966
             AF  K + +  +IKC+FK+EFLVREI  +KQ + +            P ++YRTA+DDI
Sbjct: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237

Query: 967  HVTVPFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNE 1146
             V VPFD+LDDDDPWIRTTDFT  GAIGRCNS RISIS R+  KL   + YL +R++  +
Sbjct: 238  LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297

Query: 1147 SLRKQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFF 1326
            SL + + +R+EPD +  +P+S+PFF I  +  +SFEIM+LVNA MHKGIINQHQLS  FF
Sbjct: 298  SLSRPITIREEPDFE--VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFF 355

Query: 1327 ELLRSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRK 1506
            +LLR Q+RE+N+AAL+HI S K PV D  ++LKLVQEWLLK+PE     +  DD  EVR+
Sbjct: 356  DLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRR 415

Query: 1507 LVITPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKE 1686
            LVITPTKAYCLPP VELSNRVLR+YK+++DRFLRVTF DEG+Q + +NVL+Y+IAPIV++
Sbjct: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475

Query: 1687 VTSNSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDV 1866
            +T NSFSQKT VF RV SI+  GF LC RK++FLAFS++QLRD SAWFF+ED K  V D+
Sbjct: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDI 535

Query: 1867 KRWMGKFTDRNVAKCSARMGLCFSSIY 1947
            K+WMG+FTD+N+AKC+ARMG CFSS Y
Sbjct: 536  KKWMGRFTDKNIAKCAARMGQCFSSTY 562


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  684 bits (1765), Expect = 0.0
 Identities = 341/567 (60%), Positives = 427/567 (75%)
 Frame = +1

Query: 247  MEPTGNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPI 426
            MEP G EK     +  QVS GGF ++V A EL  +LE++VG +WRCRLK S TP +SYP 
Sbjct: 1    MEPEGREKL---LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPD 57

Query: 427  FDVASVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENP 606
            F V +    ++TD+YEKVEPHAFVHFA P  VTRA++AAGR EL LNG  LKVSLGPENP
Sbjct: 58   FSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENP 117

Query: 607  FFINKRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQE 786
            F +N+R RT   FK  +V VE GTLV   EF+V W+ PASG D +VDPFD TC+  FT++
Sbjct: 118  FRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRD 177

Query: 787  AAFLFKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDI 966
             AF  K + +  +IKC+FK+EFLVREI  +KQ + +            P ++YRTA+DDI
Sbjct: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237

Query: 967  HVTVPFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNE 1146
             V VPFD+LDDDDPWIRTTDFT  GAIGRCNS RISIS R+  KL   + YL +R++  +
Sbjct: 238  LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297

Query: 1147 SLRKQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFF 1326
            SL + + +R+EPD +  +P+S+PFF I  +  +SFEIM+LVNA MHKGIINQHQLS  FF
Sbjct: 298  SLSRPITIREEPDFE--VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFF 355

Query: 1327 ELLRSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRK 1506
            +LLR Q+RE+N+AAL+HI S K PV D  ++LKLVQEWLLK+PE     +  DD  EVR+
Sbjct: 356  DLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRR 415

Query: 1507 LVITPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKE 1686
            LVITPTKAYCLPP VELSNRVLR+YK+++DRFLRVTF DEG+Q + +NVL+Y+IAPIV++
Sbjct: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475

Query: 1687 VTSNSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDV 1866
            +T NSFSQKT VF RV SI+  GF LC RK++FLAFS++QLRD SAWFF+ED K  V D+
Sbjct: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDI 535

Query: 1867 KRWMGKFTDRNVAKCSARMGLCFSSIY 1947
            K+WMG+FTD+N+AKC+ARMG CFSS Y
Sbjct: 536  KKWMGRFTDKNIAKCAARMGQCFSSTY 562


>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
          Length = 1196

 Score =  684 bits (1764), Expect = 0.0
 Identities = 328/563 (58%), Positives = 427/563 (75%)
 Frame = +1

Query: 259  GNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVA 438
            G+E   K+++VTQVS+GGFG+   A +L+++LED+VG++WRCRLK SWTPP SYP F++A
Sbjct: 2    GSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIA 61

Query: 439  SVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFIN 618
               N    D Y+KVEPHAFVHFA  E+  RA++AAG+  LIL+G PLKVSLGP+NP+ +N
Sbjct: 62   DTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLN 121

Query: 619  KRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFL 798
            +R+RT   +K + + +E GTLV   +F+V W+A   GVD +VDPFDNTC+  F +  AF 
Sbjct: 122  QRRRTTVPYKLAGITLEIGTLVSRDDFFVSWRA--EGVDFLVDPFDNTCKFCFRKSTAFS 179

Query: 799  FKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTV 978
            FKD     +I CD+KLE LVR+I  ++Q                P ++YRTA+DDI+ TV
Sbjct: 180  FKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTV 239

Query: 979  PFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRK 1158
            P DLLDDDDPWIRTTDFT  GAIGRC+S R+ ISPRY  KL+ A+DY + R++  E +R 
Sbjct: 240  PGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 299

Query: 1159 QLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLR 1338
               +R+EP    G P+S+ FF I  K  +SFEIM+LVN+ +H+G+ NQ QL+  FF+LLR
Sbjct: 300  PPRIRNEPC--FGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 357

Query: 1339 SQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVIT 1518
            +Q +++NIA+L+H+C+ KRPV D Y++LKLVQEW+ KNP+ +GS    +D +E+R+LVIT
Sbjct: 358  NQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVIT 417

Query: 1519 PTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSN 1698
            PT+AYCLPP VELSNRVLRRYK V++RFLRVTF DE MQ + SNVL+Y++APIVK++TS+
Sbjct: 418  PTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 477

Query: 1699 SFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWM 1878
            SFSQKT VF RV SI+ +GF+LC RKY+FLAFS NQLRD SAWFFAED K RVSD+K WM
Sbjct: 478  SFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWM 537

Query: 1879 GKFTDRNVAKCSARMGLCFSSIY 1947
            GKF D+NVAKC+ARMGLCFSS Y
Sbjct: 538  GKFKDKNVAKCAARMGLCFSSTY 560


>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
            gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
            Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
            AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
            Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
            Full=RNA-directed RNA polymerase 6
            gi|12324444|gb|AAG52184.1|AC012329_11 putative
            RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
            thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
            polymerase-like protein [Arabidopsis thaliana]
            gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
            gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
            6 [Arabidopsis thaliana]
          Length = 1196

 Score =  684 bits (1764), Expect = 0.0
 Identities = 328/563 (58%), Positives = 427/563 (75%)
 Frame = +1

Query: 259  GNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVA 438
            G+E   K+++VTQVS+GGFG+   A +L+++LED+VG++WRCRLK SWTPP SYP F++A
Sbjct: 2    GSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIA 61

Query: 439  SVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFIN 618
               N    D Y+KVEPHAFVHFA  E+  RA++AAG+  LIL+G PLKVSLGP+NP+ +N
Sbjct: 62   DTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLN 121

Query: 619  KRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFL 798
            +R+RT   +K + + +E GTLV   +F+V W+A   GVD +VDPFDNTC+  F +  AF 
Sbjct: 122  QRRRTTVPYKLAGITLEIGTLVSRDDFFVSWRA--EGVDFLVDPFDNTCKFCFRKSTAFS 179

Query: 799  FKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTV 978
            FKD     +I CD+KLE LVR+I  ++Q                P ++YRTA+DDI+ TV
Sbjct: 180  FKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTV 239

Query: 979  PFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRK 1158
            P DLLDDDDPWIRTTDFT  GAIGRC+S R+ ISPRY  KL+ A+DY + R++  E +R 
Sbjct: 240  PGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 299

Query: 1159 QLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLR 1338
               +R+EP    G P+S+ FF I  K  +SFEIM+LVN+ +H+G+ NQ QL+  FF+LLR
Sbjct: 300  PPRIRNEPC--FGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 357

Query: 1339 SQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVIT 1518
            +Q +++NIA+L+H+C+ KRPV D Y++LKLVQEW+ KNP+ +GS    +D +E+R+LVIT
Sbjct: 358  NQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVIT 417

Query: 1519 PTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSN 1698
            PT+AYCLPP VELSNRVLRRYK V++RFLRVTF DE MQ + SNVL+Y++APIVK++TS+
Sbjct: 418  PTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 477

Query: 1699 SFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWM 1878
            SFSQKT VF RV SI+ +GF+LC RKY+FLAFS NQLRD SAWFFAED K RVSD+K WM
Sbjct: 478  SFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWM 537

Query: 1879 GKFTDRNVAKCSARMGLCFSSIY 1947
            GKF D+NVAKC+ARMGLCFSS Y
Sbjct: 538  GKFKDKNVAKCAARMGLCFSSTY 560


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score =  682 bits (1759), Expect = 0.0
 Identities = 324/558 (58%), Positives = 426/558 (76%)
 Frame = +1

Query: 274  KKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASVENF 453
            +KE++VTQVS+GGF   V A +L+ FLE+++G+++RCRLK SWTPP+SYP F+VA     
Sbjct: 7    EKESVVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTALV 66

Query: 454  QRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKRQRT 633
            +RTD+Y+KVEPHAFVHFA PE+VT AL+A+G  +L+  G PLKV  GP+NP+F+N+R+R 
Sbjct: 67   KRTDDYKKVEPHAFVHFALPESVTEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRK 126

Query: 634  INHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFKDTK 813
               FK S+V VE GTLV   EF V W+ P  GV+L+VDPFD  CR+ F+++ AF  K  +
Sbjct: 127  ETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNE 186

Query: 814  KITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPFDLL 993
            K  +IKCDFK+EF+VR+I E+++ ++             P ++YRTA+DDI  +V FDLL
Sbjct: 187  KKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLL 246

Query: 994  DDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQLIVR 1173
            DDDDPWIRTTDFT  GAIGRCN  RISI PR+G KL  AM YL  +++    L++ L ++
Sbjct: 247  DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQ 306

Query: 1174 DEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQTRE 1353
            DEP+   G+P+S+ FFYI  +  ++F+IM+LVNA +HKGI+N + LS  FFE+LR+Q +E
Sbjct: 307  DEPN--FGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQE 364

Query: 1354 LNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPTKAY 1533
            +N+AAL+H+CS KRPV D  ++LK VQEWLL+NP+   S +  DD  EVR+LVITPT+AY
Sbjct: 365  VNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVITPTRAY 424

Query: 1534 CLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSFSQK 1713
            C+PP  ELSNRVLRRY+EVS+RFLRVTF DEGMQ +  N LNYY+APIVKE+TSNSF QK
Sbjct: 425  CVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQK 484

Query: 1714 TSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGKFTD 1893
            T ++ RV +I+ EGF  CDRKY FLAFS+NQLRD SAWFFAEDDK++   ++ WMG+F++
Sbjct: 485  TRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGRFSN 544

Query: 1894 RNVAKCSARMGLCFSSIY 1947
            RNVAKC+ARMG CFSS Y
Sbjct: 545  RNVAKCAARMGQCFSSTY 562


>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
            gi|557105252|gb|ESQ45586.1| hypothetical protein
            EUTSA_v10010107mg [Eutrema salsugineum]
          Length = 927

 Score =  678 bits (1749), Expect = 0.0
 Identities = 327/568 (57%), Positives = 427/568 (75%)
 Frame = +1

Query: 244  KMEPTGNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYP 423
            K+   G++   K ++VTQVS+GGFG+   A EL+++LE +VG IWRCRLKNSWTPP SYP
Sbjct: 13   KLRRMGSKGNMKNSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYP 72

Query: 424  IFDVASVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPEN 603
             F++A   N +  ++Y++VEPHAFVHF SPE+   A++AAG+ +LIL+G PLKVSLGPEN
Sbjct: 73   NFEIADTSNIRNFNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPEN 132

Query: 604  PFFINKRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQ 783
            P+ +N+R+RT    K S + VE GTLV   EF V W+A    VD +VDPFDNTCR  FT+
Sbjct: 133  PYTLNQRRRTTTPLKLSGISVEIGTLVSRDEFLVSWRAEK--VDFLVDPFDNTCRFCFTK 190

Query: 784  EAAFLFKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDD 963
              AF  KDT +  +I CD+KLE LVR+I  ++Q                P ++YRTA+DD
Sbjct: 191  STAFSLKDTMRHAVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRTADDD 250

Query: 964  IHVTVPFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPN 1143
            I+ T P DLLDDDDPWIRTTDFT  GAIGRC S R+ +SPRY  KL +A+DYL+ +++  
Sbjct: 251  IYETCPVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKE 310

Query: 1144 ESLRKQLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEF 1323
            E +R    +RDEP    G  +S+ FF I  K  +SFEIM+LVN+ +H+G++NQ QL+  F
Sbjct: 311  ERVRWPPRIRDEPG--FGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERF 368

Query: 1324 FELLRSQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVR 1503
            F+LLR+Q +++NIA+L+H+C+  RPV D Y++LKLVQEW+LKNP+ + S    DD +E+R
Sbjct: 369  FDLLRNQPKDVNIASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIR 428

Query: 1504 KLVITPTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVK 1683
            +LVITPT+AYCLPP VELSNRVLR+YK VS+RFLRVTF DE MQ + SNVL+Y++APIVK
Sbjct: 429  RLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPIVK 488

Query: 1684 EVTSNSFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSD 1863
            ++TS+SFSQKT VF RV +++ +GF+LC RKY+FLAFS+NQLRD SAWFF+ED   RVSD
Sbjct: 489  DLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRVSD 548

Query: 1864 VKRWMGKFTDRNVAKCSARMGLCFSSIY 1947
            +K WMGKF D+NVAKC+ARMGLCFSS Y
Sbjct: 549  IKIWMGKFKDKNVAKCAARMGLCFSSTY 576


>dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
          Length = 998

 Score =  676 bits (1745), Expect = 0.0
 Identities = 326/563 (57%), Positives = 425/563 (75%)
 Frame = +1

Query: 259  GNEKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVA 438
            G++   K ++VTQVS+GGFG+   A EL+++LE +VG IWRCRLKNSWTPP SYP F++A
Sbjct: 2    GSKGNMKNSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIA 61

Query: 439  SVENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFIN 618
               N +  ++Y++VEPHAFVHF SPE+   A++AAG+ +LIL+G PLKVSLGPENP+ +N
Sbjct: 62   DTSNIRNFNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLN 121

Query: 619  KRQRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFL 798
            +R+RT    K S + VE GTLV   EF V W+A    VD +VDPFDNTCR  FT+  AF 
Sbjct: 122  QRRRTTTPLKLSGISVEIGTLVSRDEFLVSWRAEK--VDFLVDPFDNTCRFCFTKSTAFS 179

Query: 799  FKDTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTV 978
             KDT +  +I CD+KLE LVR+I  ++Q                P ++YRTA+DDI+ T 
Sbjct: 180  LKDTMRHAVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRTADDDIYETC 239

Query: 979  PFDLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRK 1158
            P DLLDDDDPWIRTTDFT  GAIGRC S R+ +SPRY  KL +A+DYL+ +++  E +R 
Sbjct: 240  PVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVRW 299

Query: 1159 QLIVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLR 1338
               +RDEP    G  +S+ FF I  K  +SFEIM+LVN+ +H+G++NQ QL+  FF+LLR
Sbjct: 300  PPRIRDEPG--FGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLR 357

Query: 1339 SQTRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVIT 1518
            +Q +++NIA+L+H+C+  RPV D Y++LKLVQEW+LKNP+ + S    DD +E+R+LVIT
Sbjct: 358  NQPKDVNIASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVIT 417

Query: 1519 PTKAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSN 1698
            PT+AYCLPP VELSNRVLR+YK VS+RFLRVTF DE MQ + SNVL+Y++APIVK++TS+
Sbjct: 418  PTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPIVKDLTSS 477

Query: 1699 SFSQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWM 1878
            SFSQKT VF RV +++ +GF+LC RKY+FLAFS+NQLRD SAWFF+ED   RVSD+K WM
Sbjct: 478  SFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRVSDIKIWM 537

Query: 1879 GKFTDRNVAKCSARMGLCFSSIY 1947
            GKF D+NVAKC+ARMGLCFSS Y
Sbjct: 538  GKFKDKNVAKCAARMGLCFSSTY 560


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  676 bits (1743), Expect = 0.0
 Identities = 328/561 (58%), Positives = 416/561 (74%)
 Frame = +1

Query: 265  EKEKKETIVTQVSLGGFGKHVPADELSNFLEDKVGVIWRCRLKNSWTPPDSYPIFDVASV 444
            E+ + +T+VTQVS GGFG HV A EL ++LED++G+++RCRLK SWTPP+S P F+++  
Sbjct: 4    EERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDA 63

Query: 445  ENFQRTDNYEKVEPHAFVHFASPEAVTRALNAAGRGELILNGCPLKVSLGPENPFFINKR 624
             + + TD+Y KVEPHAFVHFASPE+VT  ++A GR +L  N   LK SLGPEN F +NKR
Sbjct: 64   ADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKR 123

Query: 625  QRTINHFKFSNVGVEFGTLVGEHEFWVGWKAPASGVDLIVDPFDNTCRITFTQEAAFLFK 804
            +RT   FK ++V +E G+LV   EF+V WK P  GVD +VDPFD TC+  F ++ AF FK
Sbjct: 124  RRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFK 183

Query: 805  DTKKITMIKCDFKLEFLVREIAEIKQSNNWXXXXXXXXXXXXPCLFYRTANDDIHVTVPF 984
               K  +I CDFK EF VREI E K                 P + YRTA+DDI  +V F
Sbjct: 184  GLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLF 243

Query: 985  DLLDDDDPWIRTTDFTLRGAIGRCNSCRISISPRYGLKLKNAMDYLKDRQIPNESLRKQL 1164
            DLLDDDDPWIRTTDFT  GAIGRCN  R+ I PR+G KLK AM YLK+R++    ++K  
Sbjct: 244  DLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPP 303

Query: 1165 IVRDEPDPDQGMPISNPFFYIQSKRSLSFEIMYLVNAAMHKGIINQHQLSVEFFELLRSQ 1344
             ++DEP    G P+S+  F I  ++++SF+I++LVNA MHKGI+NQHQLS  FF+LLR+Q
Sbjct: 304  RIQDEPG--FGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQ 361

Query: 1345 TRELNIAALRHICSCKRPVLDCYEKLKLVQEWLLKNPESIGSIRSPDDDAEVRKLVITPT 1524
              E+N+AAL+H+CS K PV D  ++LKLVQEWLL+NP+ I + +  DD AEVR+LVITPT
Sbjct: 362  PEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPT 421

Query: 1525 KAYCLPPVVELSNRVLRRYKEVSDRFLRVTFTDEGMQKLTSNVLNYYIAPIVKEVTSNSF 1704
            KAYCLPP VELSNRVLR+YKEV+DRFLRVTF DEGMQ + SNV+N Y+APIVKE+T N+F
Sbjct: 422  KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTF 481

Query: 1705 SQKTSVFNRVNSIMREGFRLCDRKYTFLAFSTNQLRDHSAWFFAEDDKVRVSDVKRWMGK 1884
             QKT V+ R+ +I+  GF LC RKY+FLAFS+NQLRD SAWFFAED  + +  +K WMG+
Sbjct: 482  PQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGR 541

Query: 1885 FTDRNVAKCSARMGLCFSSIY 1947
            FT+RNVAKC+ARMG CFSS Y
Sbjct: 542  FTNRNVAKCAARMGQCFSSTY 562