BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00017940
         (699 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]    416   e-114
ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic st...   415   e-114
ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus] gi|5...   415   e-114
ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus]   177   3e-42
prf||1507292A polyprotein                                             177   3e-42
sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: F...   177   3e-42
ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj...   177   3e-42
gb|AGH25505.1| RNA-dependent RNA polymerase, partial [Tomato bla...   172   1e-40
gb|AGH25498.1| RNA-dependent RNA polymerase, partial [Tomato bla...   170   4e-40
ref|NP_619705.1| polyprotein [Grapevine chrome mosaic virus] gi|...   169   6e-40
ref|YP_002000610.1| RNA-dependent RNA polymerase [Grapevine chro...   169   6e-40
gb|AGH25503.1| RNA-dependent RNA polymerase, partial [Tomato bla...   169   1e-39
gb|AGH25496.1| RNA-dependent RNA polymerase, partial [Tomato bla...   169   1e-39
gb|AGH25504.1| RNA-dependent RNA polymerase, partial [Tomato bla...   168   1e-39
gb|AGH25502.1| RNA-dependent RNA polymerase, partial [Tomato bla...   168   1e-39
gb|AGH25501.1| RNA-dependent RNA polymerase, partial [Tomato bla...   168   1e-39
gb|AGH25500.1| RNA-dependent RNA polymerase, partial [Tomato bla...   168   1e-39
ref|NP_958841.1| Pol [Tomato black ring virus]                        168   1e-39
ref|NP_958814.1| polyprotein [Tomato black ring virus] gi|513164...   168   1e-39
gb|AGH25499.1| RNA-dependent RNA polymerase, partial [Tomato bla...   167   3e-39

>gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]
          Length = 1984

 Score =  416 bits (1070), Expect = e-114
 Identities = 199/230 (86%), Positives = 213/230 (92%)
 Frame = +3

Query: 3    ESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEA 182
            E+GYWVPVETGMG+GSLPTISWVHRF RPTQLVDAYGYKIWETLRSHIESGK LVFRSEA
Sbjct: 1755 ENGYWVPVETGMGIGSLPTISWVHRFMRPTQLVDAYGYKIWETLRSHIESGKCLVFRSEA 1814

Query: 183  PYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFAN 362
            PYVA NAALMAFGQ+A LLEI+TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY AN
Sbjct: 1815 PYVASNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLAN 1874

Query: 363  AETEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCH 542
            AE+E LLQEHKTGT+IGL TDK NL+  RDLIMQGQ+LGKLPIMAATQAP K+YVGLCC 
Sbjct: 1875 AESESLLQEHKTGTVIGLTTDKANLNGARDLIMQGQKLGKLPIMAATQAPNKFYVGLCCQ 1934

Query: 543  KKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 692
            K FCPGHATSS+++ KAFSQCWAMRCAPNSSSRK+TFEP+WRKNK LGIS
Sbjct: 1935 KNFCPGHATSSDTIAKAFSQCWAMRCAPNSSSRKITFEPEWRKNKVLGIS 1984


>ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic stunt virus]
          Length = 846

 Score =  415 bits (1067), Expect = e-114
 Identities = 198/230 (86%), Positives = 214/230 (93%)
 Frame = +3

Query: 3    ESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEA 182
            ESGYWVPVETGMG+G+LPTI+WVHRF RPTQLVDAYGYKIW  +RSHIESGKSLVFRSEA
Sbjct: 617  ESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEA 676

Query: 183  PYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFAN 362
            PYVAGNAALMAFGQ+A LLEI+TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY AN
Sbjct: 677  PYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLAN 736

Query: 363  AETEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCH 542
            AE+E LLQEHKTGT+IGL T+K NL+  RDLIMQGQ+LGKLP+MAATQAP K+YVGLCC 
Sbjct: 737  AESESLLQEHKTGTVIGLTTEKFNLNGARDLIMQGQKLGKLPVMAATQAPNKFYVGLCCQ 796

Query: 543  KKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 692
            K FCPGHATSS+S+ KAFSQCWAMRCAPNSSSRKVTFEP+WRKNKFLGIS
Sbjct: 797  KNFCPGHATSSDSIAKAFSQCWAMRCAPNSSSRKVTFEPEWRKNKFLGIS 846


>ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus]
            gi|50400776|sp|Q8QVV0.1|POL1_CNSV RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|20160382|dbj|BAB89369.1| polyprotien 1 [Cycas necrotic
            stunt virus]
          Length = 2336

 Score =  415 bits (1067), Expect = e-114
 Identities = 198/230 (86%), Positives = 214/230 (93%)
 Frame = +3

Query: 3    ESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEA 182
            ESGYWVPVETGMG+G+LPTI+WVHRF RPTQLVDAYGYKIW  +RSHIESGKSLVFRSEA
Sbjct: 2107 ESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEA 2166

Query: 183  PYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFAN 362
            PYVAGNAALMAFGQ+A LLEI+TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY AN
Sbjct: 2167 PYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLAN 2226

Query: 363  AETEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCH 542
            AE+E LLQEHKTGT+IGL T+K NL+  RDLIMQGQ+LGKLP+MAATQAP K+YVGLCC 
Sbjct: 2227 AESESLLQEHKTGTVIGLTTEKFNLNGARDLIMQGQKLGKLPVMAATQAPNKFYVGLCCQ 2286

Query: 543  KKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 692
            K FCPGHATSS+S+ KAFSQCWAMRCAPNSSSRKVTFEP+WRKNKFLGIS
Sbjct: 2287 KNFCPGHATSSDSIAKAFSQCWAMRCAPNSSSRKVTFEPEWRKNKFLGIS 2336


>ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus]
          Length = 824

 Score =  177 bits (449), Expect = 3e-42
 Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  VP++ G G+G LPT  WV  F RP+QL +  GY I   LR+ IE+GK LVF S APY
Sbjct: 612  GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 671

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL+AFG    +L  + AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 672  VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 730

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E+K G ++       N +    LI+ +  +  K+P M ATQA  K+ V L C  
Sbjct: 731  TYAALCEYKEGKVL-------NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDS 783

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRC 620
              CP H     + EKAF  CW  +C
Sbjct: 784  TMCPHHTAVCETYEKAFRHCWLAKC 808


>prf||1507292A polyprotein
          Length = 2264

 Score =  177 bits (449), Expect = 3e-42
 Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  VP++ G G+G LPT  WV  F RP+QL +  GY I   LR+ IE+GK LVF S APY
Sbjct: 2052 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2111

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL+AFG    +L  + AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2112 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2170

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E+K G ++       N +    LI+ +  +  K+P M ATQA  K+ V L C  
Sbjct: 2171 TYAALCEYKEGKVL-------NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDS 2223

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRC 620
              CP H     + EKAF  CW  +C
Sbjct: 2224 TMCPHHTAVCETYEKAFRHCWLAKC 2248


>sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
          Length = 2264

 Score =  177 bits (449), Expect = 3e-42
 Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  VP++ G G+G LPT  WV  F RP+QL +  GY I   LR+ IE+GK LVF S APY
Sbjct: 2052 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2111

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL+AFG    +L  + AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2112 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2170

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E+K G ++       N +    LI+ +  +  K+P M ATQA  K+ V L C  
Sbjct: 2171 TYAALCEYKEGKVL-------NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDS 2223

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRC 620
              CP H     + EKAF  CW  +C
Sbjct: 2224 TMCPHHTAVCETYEKAFRHCWLAKC 2248


>ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj|BAA00234.1|
            polyprotein [Beet ringspot virus]
          Length = 2266

 Score =  177 bits (449), Expect = 3e-42
 Identities = 99/205 (48%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  VP++ G G+G LPT  WV  F RP+QL +  GY I   LR+ IE+GK LVF S APY
Sbjct: 2054 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2113

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL+AFG    +L  + AL  YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2114 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2172

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIM-QGQQLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E+K G ++       N +    LI+ +  +  K+P M ATQA  K+ V L C  
Sbjct: 2173 TYAALCEYKEGKVL-------NYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDS 2225

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRC 620
              CP H     + EKAF  CW  +C
Sbjct: 2226 TMCPHHTAVCETYEKAFRHCWLAKC 2250


>gb|AGH25505.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  172 bits (435), Expect = 1e-40
 Identities = 93/213 (43%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   L+  +E+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLKEQVEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA +PQA++ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPVPQANI-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKK 548
           T   L E+K G ++      K+      ++ Q  Q  K+P M A Q  G++ V + C  K
Sbjct: 184 TYAALCEYKDGKVLQYEGWPKS------ILNQAAQDRKVPCMVARQCKGRFTVHMACDSK 237

Query: 549 FCPGHATSSNSVEKAFSQCW--AMRCAPNSSSR 641
            CP H+ +  + E AF QCW    +CA N+ S+
Sbjct: 238 MCPHHSATGANYEVAFKQCWLNKCKCAGNTVSK 270


>gb|AGH25498.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  170 bits (431), Expect = 4e-40
 Identities = 95/213 (44%), Positives = 131/213 (61%), Gaps = 2/213 (0%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   L+  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLKEQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQA++ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQANI-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCCHKK 548
           T   L E+K G ++      + L +T  ++ Q  Q  K+P M A Q   K+ V + C  +
Sbjct: 184 TYAALCEYKDGKVL----QYEGLPTT--ILNQAAQDRKVPCMVARQWKSKFTVHMACDSR 237

Query: 549 FCPGHATSSNSVEKAFSQCW--AMRCAPNSSSR 641
            CP H+ +  + E AF QCW    +CA N+ S+
Sbjct: 238 MCPHHSATGANYEVAFKQCWLNKCKCAGNTVSK 270


>ref|NP_619705.1| polyprotein [Grapevine chrome mosaic virus]
            gi|130391|sp|P13025.1|POL1_GCMV RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|59346|emb|CAA33405.1| unnamed protein product
            [Grapevine chrome mosaic virus]
          Length = 2252

 Score =  169 bits (429), Expect = 6e-40
 Identities = 99/229 (43%), Positives = 130/229 (56%), Gaps = 1/229 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  +P++ G G+G LPT  WV  F RP+QL +  GY  ++ L   IE GK LVF S APY
Sbjct: 2036 GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPY 2095

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VAGNAAL++FG S  +L+ Q  L  YRN IPES +GL  YFDA +P A++ G+ YFAN E
Sbjct: 2096 VAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLPAATI-GKSYFANGE 2154

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQ-QLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E K G ++ +      +  T   I+ G  + GK+P +AA     K+ V L C+K
Sbjct: 2155 TYAALCEFKNGEVLDI------VGPTNVQILNGAVRQGKVPCLAAHSVGTKFKVSLVCNK 2208

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 692
              CP H  +  + E+AF  CW  +C       K T    W   KFLGIS
Sbjct: 2209 TMCPHHHHTGPTFEQAFRTCWLSKC-----KTKETQVSPWFGTKFLGIS 2252


>ref|YP_002000610.1| RNA-dependent RNA polymerase [Grapevine chrome mosaic virus]
          Length = 826

 Score =  169 bits (429), Expect = 6e-40
 Identities = 99/229 (43%), Positives = 130/229 (56%), Gaps = 1/229 (0%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G  +P++ G G+G LPT  WV  F RP+QL +  GY  ++ L   IE GK LVF S APY
Sbjct: 610  GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPY 669

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VAGNAAL++FG S  +L+ Q  L  YRN IPES +GL  YFDA +P A++ G+ YFAN E
Sbjct: 670  VAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLPAATI-GKSYFANGE 728

Query: 369  TEFLLQEHKTGTIIGLMTDKKNLDSTRDLIMQGQ-QLGKLPIMAATQAPGKYYVGLCCHK 545
            T   L E K G ++ +      +  T   I+ G  + GK+P +AA     K+ V L C+K
Sbjct: 729  TYAALCEFKNGEVLDI------VGPTNVQILNGAVRQGKVPCLAAHSVGTKFKVSLVCNK 782

Query: 546  KFCPGHATSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 692
              CP H  +  + E+AF  CW  +C       K T    W   KFLGIS
Sbjct: 783  TMCPHHHHTGPTFEQAFRTCWLSKC-----KTKETQVSPWFGTKFLGIS 826


>gb|AGH25503.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  169 bits (427), Expect = 1e-39
 Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 5/216 (2%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F RP+QL ++ GY I   L+  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKRWVGDFGRPSQLKNSKGYLITGLLKEQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q  GK+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------LILNQAAKDRKVPCMVARQRKGKFTVHMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCW--AMRCAPNSSSR 641
             K CP H  +  + E AF QCW    +CA N+ S+
Sbjct: 235 DSKMCPHHFATGANYEVAFKQCWLNKCKCAGNTVSK 270


>gb|AGH25496.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  169 bits (427), Expect = 1e-39
 Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 5/216 (2%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F RP+QL ++ GY I   L+  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKRWVGDFGRPSQLKNSKGYLITGLLKEQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q  GK+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------LILNQAAKDRKVPCMVARQRKGKFTVHMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCW--AMRCAPNSSSR 641
             K CP H  +  + E AF QCW    +CA N+ S+
Sbjct: 235 DSKMCPHHFATGANYEVAFKQCWLNKCKCAGNTVSK 270


>gb|AGH25504.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   LR  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------AILNQAAKDRKVPCMVARQWKSKFTVRMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCWAMRC 620
               CP H+ +  + E AF QCW  +C
Sbjct: 235 DSSMCPHHSATCANFELAFKQCWLSKC 261


>gb|AGH25502.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   LR  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTRKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------AILNQAAKDRKVPCMVARQWKSKFTVRMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCWAMRC 620
               CP H+ +  + E AF QCW  +C
Sbjct: 235 DSSMCPHHSATCANFELAFKQCWLSKC 261


>gb|AGH25501.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   LR  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------AILNQAAKDRKVPCMVARQWKSKFTVRMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCWAMRC 620
               CP H+ +  + E AF QCW  +C
Sbjct: 235 DSSMCPHHSATCANFELAFKQCWLSKC 261


>gb|AGH25500.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  168 bits (426), Expect = 1e-39
 Identities = 92/207 (44%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   L+  +E+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKKWVGNFGKPSQLKNSKGYLITGLLKEQVEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA I QAS+ G FYF + E
Sbjct: 125 VANNAALISFGSAHKMLVQKDALAHYRNVIPESTSGLEQYFDAPISQASV-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------MILNQAAKERKVPCMVARQRKNKFTVQMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCWAMRC 620
             + CP H+ +  + E AF QCW  RC
Sbjct: 235 DSRMCPHHSATGANYEVAFKQCWVSRC 261


>ref|NP_958841.1| Pol [Tomato black ring virus]
          Length = 824

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   LR  IE+GK L+F   APY
Sbjct: 612  GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPY 671

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + E
Sbjct: 672  VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGE 730

Query: 369  TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
            T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 731  TYTALCEYKDGKVLQYEGLPT---------AILNQAAKDRKVPCMVARQWKSKFTVRMAC 781

Query: 540  HKKFCPGHATSSNSVEKAFSQCWAMRC 620
                CP H+ +  + E AF QCW  +C
Sbjct: 782  DSNMCPHHSATCANFELAFKQCWLSKC 808


>ref|NP_958814.1| polyprotein [Tomato black ring virus]
            gi|51316452|sp|Q8B8X3.1|POL1_TBRVM RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName: Full=NTP-binding
            protein; Short=NTB; AltName: Full=membrane-binding
            protein; Contains: RecName: Full=Viral genome-linked
            protein; AltName: Full=1C-VPg; Contains: RecName:
            Full=Picornain 3C-like protease; Short=3C-like protease;
            AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|25247332|gb|AAN72830.1| polyprotein [Tomato black ring
            virus]
          Length = 2266

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
 Frame = +3

Query: 9    GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
            G +VP+  G G+G LPT  WV  F +P+QL ++ GY I   LR  IE+GK L+F   APY
Sbjct: 2054 GEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPY 2113

Query: 189  VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
            VA NAAL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IPQAS+ G FYF + E
Sbjct: 2114 VANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDGE 2172

Query: 369  TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
            T   L E+K G ++   GL T          ++ Q  +  K+P M A Q   K+ V + C
Sbjct: 2173 TYTALCEYKDGKVLQYEGLPT---------AILNQAAKDRKVPCMVARQWKSKFTVRMAC 2223

Query: 540  HKKFCPGHATSSNSVEKAFSQCWAMRC 620
                CP H+ +  + E AF QCW  +C
Sbjct: 2224 DSNMCPHHSATCANFELAFKQCWLSKC 2250


>gb|AGH25499.1| RNA-dependent RNA polymerase, partial [Tomato black ring virus]
          Length = 277

 Score =  167 bits (423), Expect = 3e-39
 Identities = 96/216 (44%), Positives = 128/216 (59%), Gaps = 5/216 (2%)
 Frame = +3

Query: 9   GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 188
           G +VP+  G G+G LPT  WV  F RP+QL ++ GY I   L+  IE+GK L+F   APY
Sbjct: 65  GEYVPIVFGEGIGGLPTKRWVGDFGRPSQLKNSKGYLITGLLKEQIEAGKRLIFMGPAPY 124

Query: 189 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 368
           VA N AL++FG +  +L  + AL  YRNVIPEST+GLEQYFDA IP A++ G FYF + E
Sbjct: 125 VANNTALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPSANI-GTFYFGDGE 183

Query: 369 TEFLLQEHKTGTII---GLMTDKKNLDSTRDLIMQGQQLGKLPIMAATQAPGKYYVGLCC 539
           T   L E+K G ++   GL T          ++ Q  +  K+P M A Q  GK+ V + C
Sbjct: 184 TYAALCEYKDGKVLQYEGLPT---------LILNQAAKDRKVPCMVARQRKGKFTVHMAC 234

Query: 540 HKKFCPGHATSSNSVEKAFSQCW--AMRCAPNSSSR 641
             K CP H  +  + E AF QCW    +CA N+ S+
Sbjct: 235 DSKMCPHHFATGANYEVAFKQCWLNKCKCAGNTVSK 270