BLASTX nr result
ID: Sinomenium21_contig00012963
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00012963
(814 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 177 5e-62
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera] 167 5e-58
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 170 4e-56
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 164 3e-53
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 162 6e-53
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 163 2e-52
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 158 4e-52
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 159 9e-52
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 161 9e-51
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 160 9e-51
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 160 2e-50
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 159 3e-50
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 143 1e-48
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 154 3e-48
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 153 3e-48
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 156 9e-48
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 156 9e-48
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 156 9e-48
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 150 1e-47
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 155 2e-47
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 177 bits (450), Expect(2) = 5e-62
Identities = 83/133 (62%), Positives = 104/133 (78%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+CTRPDL+QA+SVVSKYM+NP + HW+A+KWIF+YLK + F ++ G+
Sbjct: 1088 GCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEA 1147
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V +VDSD+AGDLD+RRST YVFT GGG VSW++ LQ+ +ALST EAEYM +TEASKE
Sbjct: 1148 CVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKE 1207
Query: 361 AIWLKRLVNDLGL 399
AIWL L LG+
Sbjct: 1208 AIWLNGLAGQLGV 1220
Score = 87.8 bits (216), Expect(2) = 5e-62
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI + KNQVFHARTK+ID RYHR+RD ++ G I+VEK HTD+NA+ FLTKPV +K+
Sbjct: 1233 SAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY-- 1290
Query: 584 CLNLLNITSC 613
LL+IT+C
Sbjct: 1291 ---LLSITTC 1297
>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
Length = 406
Score = 167 bits (423), Expect(2) = 5e-58
Identities = 79/134 (58%), Positives = 102/134 (76%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVCTR DL+ AVSVVSK+++NP +W A+KWIFRYL+ + + F+KQ DP
Sbjct: 197 GCLMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQQSDP 256
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V YVD+DYAGDLD+RRST YVFTLGGG + W+SM+QS AL T ++EYM I E +KE
Sbjct: 257 SVKGYVDADYAGDLDERRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKE 316
Query: 361 AIWLKRLVNDLGLK 402
++WL LV +LG++
Sbjct: 317 SLWLTGLVKELGIQ 330
Score = 84.7 bits (208), Expect(2) = 5e-58
Identities = 37/64 (57%), Positives = 51/64 (79%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI + KNQV+HARTK+IDVR+H++ + + GE+L++K HT ENA+ LTKPV +KF+H
Sbjct: 342 SAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEKFKH 401
Query: 584 CLNL 595
CL L
Sbjct: 402 CLKL 405
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 170 bits (430), Expect(2) = 4e-56
Identities = 88/133 (66%), Positives = 101/133 (75%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G L+YAMVCTRPD+SQAVS+VS+YM NP + W A+KWI RYL L F K G
Sbjct: 83 GSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKWILRYLYGTVDVGLLFKKNCGQQ 142
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V Y DSD+AGDLDK+RST+ YVFTLGGGSVSWRS+LQST ALST EAEY+ TEA KE
Sbjct: 143 CV-GYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKE 201
Query: 361 AIWLKRLVNDLGL 399
AIWLK L+ DLG+
Sbjct: 202 AIWLKGLLGDLGV 214
Score = 75.9 bits (185), Expect(2) = 4e-56
Identities = 36/67 (53%), Positives = 50/67 (74%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI + KNQ +HARTK+IDV+YH VR+ I+ G++L++K T +N S LTK V + KF+H
Sbjct: 227 SAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQH 286
Query: 584 CLNLLNI 604
CL L+ I
Sbjct: 287 CLKLIQI 293
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 164 bits (414), Expect(2) = 3e-53
Identities = 79/131 (60%), Positives = 100/131 (76%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+C+RPDLS A+SVVS+YM NP +EHWK ++WIFRYL + L F +
Sbjct: 970 GSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQWIFRYLHGTSSACLQFGRSRDG- 1028
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
++ YVDSD+AGDLD+RRS T YVFT+GG +VSW++ LQ+T ALST EAEYM I+EA KE
Sbjct: 1029 -LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKE 1087
Query: 361 AIWLKRLVNDL 393
AIWL+ L +L
Sbjct: 1088 AIWLRGLYTEL 1098
Score = 72.4 bits (176), Expect(2) = 3e-53
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+TK+Q+FH RTK+IDVRYH +R I G++ V K T +N + +TKPV KFE
Sbjct: 1113 SAICLTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFEL 1172
Query: 584 CLNLLNIT 607
C +L+ +T
Sbjct: 1173 CSSLVGVT 1180
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 162 bits (409), Expect(2) = 6e-53
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+RPDLS A+SVVS+YM NP +EHWKA++WIFRYL + L F +
Sbjct: 927 GSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGRSRDG- 985
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
++ YVDSD+AGDLD+RRS YVFT+GG +VSW++ LQ+T ALST EAEYM I+EA KE
Sbjct: 986 -LVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISEACKE 1044
Query: 361 AIWLKRLVNDL 393
IWL+ L +L
Sbjct: 1045 TIWLRGLYTEL 1055
Score = 73.2 bits (178), Expect(2) = 6e-53
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+TK+Q+FH RTK+IDVRYH +R I G++ V K T +N + +TKPV KFE
Sbjct: 1070 SAICLTKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTKPVPATKFEL 1129
Query: 584 CLNLLNIT 607
C +L+ +T
Sbjct: 1130 CSSLVGVT 1137
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 163 bits (412), Expect(2) = 2e-52
Identities = 79/129 (61%), Positives = 100/129 (77%)
Frame = +1
Query: 7 LMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDPYV 186
LMYAMVC+RPDLS A+SVVS+YM NP +EHWKA++WIFRYL+ + L F + +
Sbjct: 1032 LMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDG--L 1089
Query: 187 IAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKEAI 366
+ YVDSD+AGDLD+RRS T YVFT+GG +VSW++ LQ+T ALST EAEYM I+EA KE I
Sbjct: 1090 VGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVI 1149
Query: 367 WLKRLVNDL 393
WL+ L +L
Sbjct: 1150 WLRGLYTEL 1158
Score = 70.1 bits (170), Expect(2) = 2e-52
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+TK+Q+FH RTK+ID+RYH +R I G++ V K T +N +TKPV KFE
Sbjct: 1173 SAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFEL 1232
Query: 584 CLNLLNIT 607
C +L+ +T
Sbjct: 1233 CSSLVGVT 1240
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 158 bits (399), Expect(2) = 4e-52
Identities = 84/135 (62%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVCTRPDL+ AVSVVS++M P EHW+A+K IFRYL+ L + GD
Sbjct: 1097 GSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYG---GDT 1153
Query: 181 Y--VIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEAS 354
V Y DSDYAGD+D RRS T YVFTLGG VSW++ LQ T LST EAEYM +TEA+
Sbjct: 1154 QCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAA 1213
Query: 355 KEAIWLKRLVNDLGL 399
KE IWLK LV+DLGL
Sbjct: 1214 KEGIWLKGLVSDLGL 1228
Score = 74.3 bits (181), Expect(2) = 4e-52
Identities = 38/70 (54%), Positives = 48/70 (68%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+ K+QV H RTK+IDVRYH +R I V+K T +N + TKPV + KF+H
Sbjct: 1241 SAICLAKDQVHHERTKHIDVRYHFLRS---EKRIKVKKVGTADNPADMFTKPVPQSKFQH 1297
Query: 584 CLNLLNITSC 613
CL+LLNI SC
Sbjct: 1298 CLDLLNIRSC 1307
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 159 bits (403), Expect(2) = 9e-52
Identities = 77/131 (58%), Positives = 99/131 (75%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+R DLS A+SVVS+YM NP +EHWK ++WIF+YL+ + L F +
Sbjct: 1000 GSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRSRDG- 1058
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
++ YVDSD+AGDLD+RRS T YVFT+GG +VSW++ LQ+T ALST E EYM I+EA KE
Sbjct: 1059 -LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKE 1117
Query: 361 AIWLKRLVNDL 393
AIWL+ L +L
Sbjct: 1118 AIWLRGLYTEL 1128
Score = 71.6 bits (174), Expect(2) = 9e-52
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC TK+Q+FH RTK+IDVRYH +R I G++ V K T +N + +TKPV KFE
Sbjct: 1143 SAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFEL 1202
Query: 584 CLNLLNIT 607
C +L+ +T
Sbjct: 1203 CSSLVGVT 1210
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 161 bits (407), Expect(2) = 9e-51
Identities = 78/127 (61%), Positives = 98/127 (77%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+RPDLS A+SVVS+YM NP +EHWKA++WIFRYL+ + L F +
Sbjct: 1328 GSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDG- 1386
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
++ YVDSD+AGDLD+ RS YVFT+GG +VSW++ LQ+T ALST EAEYM I+EA KE
Sbjct: 1387 -LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKE 1445
Query: 361 AIWLKRL 381
AIWL+ L
Sbjct: 1446 AIWLRGL 1452
Score = 66.6 bits (161), Expect(2) = 9e-51
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+TK+Q+FH RTK+IDVRYH +R I G++ + K +N + +TKPV KFE
Sbjct: 1471 SAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFEL 1530
Query: 584 CLNLL 598
C +L+
Sbjct: 1531 CSSLV 1535
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 160 bits (406), Expect(2) = 9e-51
Identities = 83/137 (60%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+RPDLS A+S+VS+YM+NP +EHW+A++WIFRYL+ GT D
Sbjct: 1122 GSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLR--GTTYSCLKFGRTDK 1179
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
+I YVDSDYA DLD+RRS T YVFT+G +VSWR+ LQS ALST EAEYM I EA KE
Sbjct: 1180 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239
Query: 361 AIWLKRLVNDL-GLK*C 408
IWLK L +L G++ C
Sbjct: 1240 LIWLKGLYAELSGVESC 1256
Score = 67.0 bits (162), Expect(2) = 9e-51
Identities = 32/67 (47%), Positives = 48/67 (71%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI +TK+Q+FH RTK+ID++YH VRD I+ G++ V K T +N + +TKP+ KFE
Sbjct: 1265 SAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFEL 1324
Query: 584 CLNLLNI 604
C +L+ +
Sbjct: 1325 CSSLVGL 1331
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 160 bits (405), Expect(2) = 2e-50
Identities = 83/137 (60%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+RPDLS A+S+VS+YM+NP +EHW+A++WIFRYL+ GT D
Sbjct: 1124 GSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLR--GTTYSCLKFGRTDK 1181
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
+I YVDSDYA DLD+RRS T YVFT+G +VSWR+ LQS ALST EAEYM I EA KE
Sbjct: 1182 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1241
Query: 361 AIWLKRLVNDL-GLK*C 408
IWLK L +L G++ C
Sbjct: 1242 LIWLKGLYAELSGVESC 1258
Score = 66.2 bits (160), Expect(2) = 2e-50
Identities = 32/67 (47%), Positives = 48/67 (71%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI +TK+Q+FH RTK+ID++YH VRD I+ G++ V K T +N + +TKP+ KFE
Sbjct: 1267 SAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFEL 1326
Query: 584 CLNLLNI 604
C +L+ +
Sbjct: 1327 CSSLVGL 1333
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 159 bits (402), Expect(2) = 3e-50
Identities = 82/137 (59%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+RPDLS A+S+VS+YM+NP +EHW+ ++WIFRYL+ GT D
Sbjct: 1122 GSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLR--GTTYSCLKFGRTDK 1179
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
+I YVDSDYA DLD+RRS T YVFT+G +VSWR+ LQS ALST EAEYM I EA KE
Sbjct: 1180 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239
Query: 361 AIWLKRLVNDL-GLK*C 408
IWLK L +L G++ C
Sbjct: 1240 LIWLKGLYAELSGVESC 1256
Score = 67.0 bits (162), Expect(2) = 3e-50
Identities = 32/67 (47%), Positives = 48/67 (71%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI +TK+Q+FH RTK+ID++YH VRD I+ G++ V K T +N + +TKP+ KFE
Sbjct: 1265 SAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFEL 1324
Query: 584 CLNLLNI 604
C +L+ +
Sbjct: 1325 CSSLVGL 1331
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 143 bits (360), Expect(2) = 1e-48
Identities = 67/134 (50%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLK-VQGTWVLWFTKQHGD 177
G +MY MVC+RPDL+ AVS++S+YM+ P + HW+A+KW+F+YL + +++ +
Sbjct: 993 GSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLE 1052
Query: 178 PYVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASK 357
+ +VD+DYAG++D R+S T YVFT GG+VSW++ LQS ALST EAEYM +TEA K
Sbjct: 1053 TQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAMTEAVK 1112
Query: 358 EAIWLKRLVNDLGL 399
EAIWLK + +L +
Sbjct: 1113 EAIWLKGITEELAM 1126
Score = 77.8 bits (190), Expect(2) = 1e-48
Identities = 40/70 (57%), Positives = 48/70 (68%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI + KNQ FH R+K+IDVR H VRD I GEI V K HT +N S LTK + KF+H
Sbjct: 1139 SAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKH 1198
Query: 584 CLNLLNITSC 613
CLNL+N+ C
Sbjct: 1199 CLNLINMGDC 1208
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 154 bits (388), Expect(2) = 3e-48
Identities = 73/133 (54%), Positives = 94/133 (70%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVCTRPD++ AV VVS+++ NP +EHW+A+KWI RYL+ GT DP
Sbjct: 1116 GSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLR--GTTGDCLCFGGSDP 1173
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
+ Y D+D AGD+D R+S+T Y+FT GG++SW+S LQ ALST EAEY+ TE KE
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233
Query: 361 AIWLKRLVNDLGL 399
IWLKR + +LGL
Sbjct: 1234 MIWLKRFLQELGL 1246
Score = 65.5 bits (158), Expect(2) = 3e-48
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAI ++KN ++HARTK+IDVRYH +R+ +D + V K T+EN + LTK V ++KFE
Sbjct: 1259 SAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFEL 1318
Query: 584 CLNLLNITS 610
C L+ + S
Sbjct: 1319 CKELVGMHS 1327
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 153 bits (386), Expect(2) = 3e-48
Identities = 73/134 (54%), Positives = 99/134 (73%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G +MYAM+ TRPDL+ + +VS+YM P HW+A+KWI RY++ L FTK+ +
Sbjct: 373 GSIMYAMIGTRPDLAYDICLVSRYMARPGSIHWEAVKWILRYMRGSQDLNLVFTKEK-EF 431
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V Y DSDYA DLD+RRS + YVFT+GG +VSW++ LQS +ALST EAE+M +TEA+KE
Sbjct: 432 RVTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKE 491
Query: 361 AIWLKRLVNDLGLK 402
A+W+K L+ DLGL+
Sbjct: 492 ALWIKGLMKDLGLE 505
Score = 66.2 bits (160), Expect(2) = 3e-48
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC++KN H RTK+IDVRY+ +RD ++ G++ V K HT N + LTK + +KF+
Sbjct: 517 SAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHTSRNPADALTKSIPVNKFQS 576
Query: 584 CLNLLNI 604
L LL +
Sbjct: 577 ALELLKL 583
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 156 bits (395), Expect(2) = 9e-48
Identities = 79/135 (58%), Positives = 98/135 (72%), Gaps = 1/135 (0%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+CTRPD++QAV VS++M +P +EHW A+K I RY++ L F G
Sbjct: 1093 GSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFG---GSE 1149
Query: 181 YVI-AYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASK 357
+ I YVDSD+AGDLDKR+STT YVFTL GG+VSW S LQ+ ALST EAEYM T+A K
Sbjct: 1150 FTIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACK 1209
Query: 358 EAIWLKRLVNDLGLK 402
EAIW +RL+ +LG K
Sbjct: 1210 EAIWTQRLLEELGHK 1224
Score = 61.2 bits (147), Expect(2) = 9e-48
Identities = 26/61 (42%), Positives = 42/61 (68%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SA+ + +N FH+RTK+I V+YH VR+ ++ G + ++K HT +N + +TKP+ DKF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKFIW 1295
Query: 584 C 586
C
Sbjct: 1296 C 1296
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 156 bits (394), Expect(2) = 9e-48
Identities = 79/134 (58%), Positives = 99/134 (73%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+CTRPD++QAV VVS++M +P +EHW A+K I RY+K GT + +
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIK--GTSGVAVCFGGSEL 1150
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V YVDSD+AGD DKR+STT YVFTL GG+VSW S LQ+ ALST EAEYM T+A KE
Sbjct: 1151 TVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKE 1210
Query: 361 AIWLKRLVNDLGLK 402
AIW++RL+ +LG K
Sbjct: 1211 AIWMQRLMEELGHK 1224
Score = 61.6 bits (148), Expect(2) = 9e-48
Identities = 26/61 (42%), Positives = 43/61 (70%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SA+ + +N FH+RTK+I V+YH VR+ ++ G + ++K HT++N + +TKP+ DKF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVW 1295
Query: 584 C 586
C
Sbjct: 1296 C 1296
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 156 bits (394), Expect(2) = 9e-48
Identities = 79/134 (58%), Positives = 99/134 (73%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+CTRPD++QAV VVS++M +P +EHW A+K I RY+K GT + +
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIK--GTSGVAVCFGGSEL 1150
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V YVDSD+AGD DKR+STT YVFTL GG+VSW S LQ+ ALST EAEYM T+A KE
Sbjct: 1151 TVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKE 1210
Query: 361 AIWLKRLVNDLGLK 402
AIW++RL+ +LG K
Sbjct: 1211 AIWMQRLMEELGHK 1224
Score = 61.6 bits (148), Expect(2) = 9e-48
Identities = 26/61 (42%), Positives = 43/61 (70%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SA+ + +N FH+RTK+I V+YH VR+ ++ G + ++K HT++N + +TKP+ DKF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVW 1295
Query: 584 C 586
C
Sbjct: 1296 C 1296
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 150 bits (380), Expect(2) = 1e-47
Identities = 76/131 (58%), Positives = 95/131 (72%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAMVC+R DLS A+S+VS+YM NP +EHWKAI+WIFRYL+ L F + +
Sbjct: 964 GSLMYAMVCSRLDLSHAMSLVSRYMANPGKEHWKAIQWIFRYLRDTANACLKFGRTNKG- 1022
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
+I YVDSD+A DLDKRRS T YVFT+G +VSW++ L+ A ST EAEYM I EA KE
Sbjct: 1023 -LIGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLRHVVAQSTTEAEYMAIAEACKE 1081
Query: 361 AIWLKRLVNDL 393
++WLK L +L
Sbjct: 1082 SVWLKGLFAEL 1092
Score = 66.6 bits (161), Expect(2) = 1e-47
Identities = 33/67 (49%), Positives = 46/67 (68%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SAIC+TK+Q+FH RTK+ID++YH VRD + G++ V K T +N +TK V KFE
Sbjct: 1107 SAICLTKDQMFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPVDMMTKHVPVAKFEL 1166
Query: 584 CLNLLNI 604
C +L+ I
Sbjct: 1167 CSSLVGI 1173
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 155 bits (392), Expect(2) = 2e-47
Identities = 79/134 (58%), Positives = 99/134 (73%)
Frame = +1
Query: 1 GGLMYAMVCTRPDLSQAVSVVSKYMTNPSEEHWKAIKWIFRYLKVQGTWVLWFTKQHGDP 180
G LMYAM+CTRPD++QAV VVS++M +P +EHW A+K I RY+K GT + +
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIK--GTSGVAVCFGGSEL 1150
Query: 181 YVIAYVDSDYAGDLDKRRSTTVYVFTLGGGSVSWRSMLQSTSALSTIEAEYMVITEASKE 360
V YVDSD+AGD DKR+STT YVFTL GG+VSW S LQ+ ALST EAEYM T+A KE
Sbjct: 1151 TVRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKE 1210
Query: 361 AIWLKRLVNDLGLK 402
AIW++RL+ +LG K
Sbjct: 1211 AIWMQRLMEELGHK 1224
Score = 61.6 bits (148), Expect(2) = 2e-47
Identities = 26/61 (42%), Positives = 43/61 (70%)
Frame = +2
Query: 404 SAICVTKNQVFHARTKYIDVRYHRVRD*IDLGEILVEKAHTDENASYFLTKPVVKDKFEH 583
SA+ + +N FH+RTK+I V+YH VR+ ++ G + ++K HT++N + +TKP+ DKF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVW 1295
Query: 584 C 586
C
Sbjct: 1296 C 1296