BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00012760
         (1229 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...   511   e-142
ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containi...   500   e-139
ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containi...   500   e-139
ref|XP_007012633.1| Pentatricopeptide repeat superfamily protein...   496   e-138
ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citr...   492   e-136
ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containi...   488   e-135
ref|XP_004301429.1| PREDICTED: pentatricopeptide repeat-containi...   485   e-134
ref|XP_002512275.1| pentatricopeptide repeat-containing protein,...   482   e-133
gb|EXB38956.1| hypothetical protein L484_027391 [Morus notabilis]     479   e-133
ref|XP_006381622.1| pentatricopeptide repeat-containing family p...   474   e-131
gb|EYU18527.1| hypothetical protein MIMGU_mgv1a003955mg [Mimulus...   473   e-131
ref|XP_004230611.1| PREDICTED: pentatricopeptide repeat-containi...   452   e-124
ref|XP_006351831.1| PREDICTED: pentatricopeptide repeat-containi...   446   e-122
ref|XP_006297396.1| hypothetical protein CARUB_v10013421mg [Caps...   440   e-121
ref|XP_002885810.1| pentatricopeptide repeat-containing protein ...   440   e-121
ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containi...   439   e-120
dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]                      437   e-120
ref|NP_178657.1| pentatricopeptide repeat-containing protein [Ar...   437   e-120
ref|XP_006577946.1| PREDICTED: pentatricopeptide repeat-containi...   436   e-119
ref|XP_006396122.1| hypothetical protein EUTSA_v10002477mg [Eutr...   433   e-119

>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Vitis vinifera]
          Length = 641

 Score =  511 bits (1316), Expect = e-142
 Identities = 251/413 (60%), Positives = 318/413 (76%), Gaps = 4/413 (0%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV-- 174
            PSI F VV  L NP+LAL+FF+  +VN    + F +TY+FL++SL + G HE+A  +   
Sbjct: 104  PSIAFEVVRGLNNPELALKFFQLSRVNLNLCHSF-RTYSFLLRSLSEMGFHESAKAVYDC 162

Query: 175  --FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNNR 348
               DG+ PD SV  FLVSS   AGK +IA+       +  ++ +   YN LLN LV  N+
Sbjct: 163  MNIDGHSPDASVLGFLVSSATDAGKFNIAR-----TWVDGVEFSLVVYNKLLNQLVRGNQ 217

Query: 349  VDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTYN 528
            VDEA+CFF++Q + L    D+CSFNI++RGLCR+GK+D AFELFN M  F CS DV+TYN
Sbjct: 218  VDEAVCFFREQ-MGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYN 276

Query: 529  TLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMIN 708
            TLI+GFCR  +VD+G++LL ++ SK   SPDVVTYTS+ISGYCKLGKME+AS L + MI+
Sbjct: 277  TLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMIS 336

Query: 709  KGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIEE 888
             GI PN+FTFNILINGFGKVG+  SA  MYE ML  GC PD++TFTSLIDG+CRTG +E 
Sbjct: 337  SGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVER 396

Query: 889  GMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVID 1068
             ++LW+E+ A+N+SPN YTF++L NALCKENRL+EAR  LR L+WR+IV +PF+YNPVID
Sbjct: 397  SLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVID 456

Query: 1069 GFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            GFCKAGNV+EANVIL EMEEKRC PDK T+T LIIGHCMKGR++EAIS+F++M
Sbjct: 457  GFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM 509


>ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Cucumis sativus]
          Length = 548

 Score =  500 bits (1287), Expect = e-139
 Identities = 244/414 (58%), Positives = 310/414 (74%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            PSI F V+ R  +P L L+FFEF + +   +N    TY+ L+++LC+ GL+++A K+VFD
Sbjct: 76   PSIAFEVIKRFSDPLLGLKFFEFSRTHLS-INHTFNTYDLLMRNLCKVGLNDSA-KIVFD 133

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G  PD S+ + LVSS A+ GKLD AK  L +     IKV+ F YNNLLN+LV  N
Sbjct: 134  CMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQN 193

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
             VDEA+  F++ +L   F PD  SFNI++RGLCR+G++D AFE F  MG+F C  D+V+Y
Sbjct: 194  LVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSY 252

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI+GFCR  ++ KG++LL +     G SPDV+TYTS+ISGYCKLG M+ AS L DEM+
Sbjct: 253  NTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMV 312

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
            + GI PN FTFN+LI+GFGKVGN RSAM MYE ML  GC+PDVVTFTSLIDGYCR G + 
Sbjct: 313  SSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVN 372

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            +G++LW EM  +N+SPN YT++VLINALCKENR+ EAR+ LR L+   +VP+PFIYNPVI
Sbjct: 373  QGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVI 432

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAG V+EAN I+ EM+EK+C PDK TFT LIIG+CMKGRM EAIS F+KM
Sbjct: 433  DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKM 486


>ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Cucumis sativus]
          Length = 548

 Score =  500 bits (1287), Expect = e-139
 Identities = 244/414 (58%), Positives = 310/414 (74%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            PSI F V+ R  +P L L+FFEF + +   +N    TY+ L+++LC+ GL+++A K+VFD
Sbjct: 76   PSIAFEVIKRFSDPLLGLKFFEFSRTHLS-INHTFNTYDLLMRNLCKVGLNDSA-KIVFD 133

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G  PD S+ + LVSS A+ GKLD AK  L +     IKV+ F YNNLLN+LV  N
Sbjct: 134  CMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQN 193

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
             VDEA+  F++ +L   F PD  SFNI++RGLCR+G++D AFE F  MG+F C  D+V+Y
Sbjct: 194  LVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSY 252

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI+GFCR  ++ KG++LL +     G SPDV+TYTS+ISGYCKLG M+ AS L DEM+
Sbjct: 253  NTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMV 312

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
            + GI PN FTFN+LI+GFGKVGN RSAM MYE ML  GC+PDVVTFTSLIDGYCR G + 
Sbjct: 313  SSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVN 372

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            +G++LW EM  +N+SPN YT++VLINALCKENR+ EAR+ LR L+   +VP+PFIYNPVI
Sbjct: 373  QGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVI 432

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAG V+EAN I+ EM+EK+C PDK TFT LIIG+CMKGRM EAIS F+KM
Sbjct: 433  DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKM 486


>ref|XP_007012633.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
            cacao] gi|508782996|gb|EOY30252.1| Pentatricopeptide
            repeat superfamily protein, putative [Theobroma cacao]
          Length = 592

 Score =  496 bits (1277), Expect = e-138
 Identities = 242/414 (58%), Positives = 316/414 (76%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            P I F VV  L NP L L+F EF +VN    + F  TYN L++S C  GLH++A KLVFD
Sbjct: 120  PLIEFEVVKWLNNPALGLKFLEFSRVNFNIAHSFW-TYNLLMRSFCHMGLHDSA-KLVFD 177

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G+ PD ++  F++SS  +AG+  +AK+LL      ++ ++ F  NNLLN++V  N
Sbjct: 178  YMRIDGHLPDTTILGFMISSFGRAGEFGMAKKLLADVQSDEVVISIFALNNLLNMMVKQN 237

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            +++EA+  +++ NL   F PD  +FNI++RGLCR+GK+D AFELFN MGSF C  D+VTY
Sbjct: 238  KLEEAVSLYKE-NLGSNFYPDAWTFNILIRGLCRVGKVDQAFELFNDMGSFGCFPDIVTY 296

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NT+I+G C+  +VD+G++LL Q+QS+   SPDVVTYTSVISGYCKLGKM+EASAL  EMI
Sbjct: 297  NTIINGLCKVNEVDRGHKLLNQVQSRDDCSPDVVTYTSVISGYCKLGKMDEASALFHEMI 356

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
            + G +P   TFN+LI+GFGKVG+  SA +MYE M S GC+ DVVTFTSLIDGYCR G + 
Sbjct: 357  SSGTVPTVVTFNVLIDGFGKVGDMVSAKSMYEQMASFGCIADVVTFTSLIDGYCRIGDVN 416

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            + ++LWN M  +++SPN YTF++ INALCKENRL+EAR  LR+L+ RNIVP+PFI+NPVI
Sbjct: 417  QSLQLWNTMKGRDLSPNVYTFAITINALCKENRLHEARGFLRELQCRNIVPKPFIFNPVI 476

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAGN++EAN+I+ EMEEK+C+PDK TFT LIIGHCMKGRM EAIS+F+KM
Sbjct: 477  DGFCKAGNLDEANLIVAEMEEKQCHPDKVTFTILIIGHCMKGRMFEAISIFNKM 530


>ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citrus clementina]
            gi|557556032|gb|ESR66046.1| hypothetical protein
            CICLE_v10007804mg [Citrus clementina]
          Length = 595

 Score =  492 bits (1267), Expect = e-136
 Identities = 243/408 (59%), Positives = 314/408 (76%), Gaps = 5/408 (1%)
 Frame = +1

Query: 19   VVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD-----G 183
            V+ RL NPKL L+F EF +VN   LN   KTYN +++SLC+ GLH++  ++VFD     G
Sbjct: 129  VIKRLDNPKLGLKFLEFSRVNLS-LNHSFKTYNLVMRSLCEMGLHDSV-QVVFDYMRSDG 186

Query: 184  YFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNNRVDEAI 363
            + P+  + +F VSSC +AGK D AK LL Q    ++ +++F YN+LLN LV  N  DEA+
Sbjct: 187  HLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246

Query: 364  CFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTYNTLIDG 543
              F++   RL   PDT +FNI++RGLCR+G++  AFE F  MGSF CS D+VTYNTLI G
Sbjct: 247  YMFKEY-FRLYSQPDTWTFNILIRGLCRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305

Query: 544  FCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMINKGIMP 723
             CR  +V +G+ELL +++ K+ F PDVVTYTSVISGYCKLGKM++A+++ +EM + GI P
Sbjct: 306  LCRVNEVARGHELLKEVKFKSEFLPDVVTYTSVISGYCKLGKMDKATSIYNEMNSCGIKP 365

Query: 724  NSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIEEGMRLW 903
            ++ TFN+LI+GFGKVGN  SA  M E MLS G +PDVVTF+SLIDGYCR G + +G++L 
Sbjct: 366  SAVTFNVLIDGFGKVGNMVSAEYMRERMLSLGYLPDVVTFSSLIDGYCRNGQLNQGLKLC 425

Query: 904  NEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVIDGFCKA 1083
            +EM  KN+SPN YTF++LINALCKENRLN+AR  L+QL+W ++VP+PF+YNPVIDGFCKA
Sbjct: 426  DEMKGKNLSPNVYTFAILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485

Query: 1084 GNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            GNV+EANVI+ EMEEKRC PDK TFT LIIGHCMKGRM EAIS+F+KM
Sbjct: 486  GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533


>ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            isoform X1 [Citrus sinensis]
            gi|568841566|ref|XP_006474729.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At2g06000-like isoform X2 [Citrus sinensis]
          Length = 595

 Score =  488 bits (1257), Expect = e-135
 Identities = 242/408 (59%), Positives = 313/408 (76%), Gaps = 5/408 (1%)
 Frame = +1

Query: 19   VVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD-----G 183
            V+ RL NPKL L+F EF +VN   LN   KTYN +++SLC+ GLH++  ++VFD     G
Sbjct: 129  VIKRLDNPKLGLKFLEFSRVNLS-LNHSFKTYNLVMRSLCEMGLHDSV-QVVFDYMRSDG 186

Query: 184  YFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNNRVDEAI 363
            + P+  + +F VSSC +AGK D AK LL Q    ++ +++F YN+LLN LV  N  DEA+
Sbjct: 187  HLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246

Query: 364  CFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTYNTLIDG 543
              F++   RL   PDT +FNI+++GL R+G++  AFE F  MGSF CS D+VTYNTLI G
Sbjct: 247  YMFKEY-FRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305

Query: 544  FCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMINKGIMP 723
             CR  +V +G+ELL +++ K+ FSPDVVTYTSVISGYCKLGKM++A+ + +EM + GI P
Sbjct: 306  LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365

Query: 724  NSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIEEGMRLW 903
            ++ TFN+LI+GFGKVGN  SA  M E MLS G +PDVVTF+SLIDGYCR G + +G++L 
Sbjct: 366  SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLC 425

Query: 904  NEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVIDGFCKA 1083
            +EM  KN+SPN YTF++LINALCKENRLN+AR  L+QL+W ++VP+PF+YNPVIDGFCKA
Sbjct: 426  DEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485

Query: 1084 GNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            GNV+EANVI+ EMEEKRC PDK TFT LIIGHCMKGRM EAIS+F+KM
Sbjct: 486  GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533


>ref|XP_004301429.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Fragaria vesca subsp. vesca]
          Length = 583

 Score =  485 bits (1249), Expect = e-134
 Identities = 241/414 (58%), Positives = 315/414 (76%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            PS+ F V+ RL NPKL LRFFE  + +   +N  V TY++L++SLCQ GL ++A KLVFD
Sbjct: 112  PSLAFEVIKRLNNPKLGLRFFELSKFSLN-VNHGVWTYHYLLRSLCQMGLQDSA-KLVFD 169

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G  P+ SV +FLVSSCAQ G+ D+A+++L +   S + ++SF YNNL N+LV  N
Sbjct: 170  YMRTDGLSPNESVLEFLVSSCAQMGRSDLAEKILDEVHCSVVGLSSFVYNNLFNVLVKLN 229

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            RVDEA+C F+ + +    CPD+ +FNI++RGLCR G +D   E F+ M SF CS +VVTY
Sbjct: 230  RVDEAVCLFR-KYVGSYCCPDSWTFNILIRGLCRTGAVDKGLEFFSDMRSFGCSPNVVTY 288

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI G CRA +VD+G +LL ++Q ++  SPDV+T+TSVISGYCKLG+MEEASA+ DEMI
Sbjct: 289  NTLISGLCRAHEVDRGCDLLREVQFRSELSPDVITFTSVISGYCKLGRMEEASAIFDEMI 348

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              G+ P + TFN LI+G+GK G+  SA ++YE+ML  G   DV+TFTSLIDGYCR G + 
Sbjct: 349  GCGLKPTAVTFNALIDGYGKAGDMSSAFSLYESMLFHGHCADVITFTSLIDGYCRAGHLN 408

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
             G++LW+EM AKN+SP+AYTFSVLINALCK NRL EARDLLR+L+  N+VP+ F+YNPVI
Sbjct: 409  HGLQLWHEMNAKNVSPSAYTFSVLINALCKGNRLCEARDLLRELKGSNVVPKSFLYNPVI 468

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DG CKAGN++EAN+I+ EMEEK+C PD+ TFT LI+G+ MKGRM+EAI  F KM
Sbjct: 469  DGLCKAGNIDEANLIVAEMEEKKCTPDRVTFTILILGNSMKGRMSEAIGNFSKM 522


>ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548236|gb|EEF49727.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 532

 Score =  482 bits (1240), Expect = e-133
 Identities = 236/414 (57%), Positives = 310/414 (74%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGN-PKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV- 174
            P + F V+ RL N P++ L+F EFC++N   ++ F  TY  L++SLCQ GLH+    ++ 
Sbjct: 59   PLVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCF-STYELLIRSLCQMGLHDLVEMVIG 117

Query: 175  ---FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                DG+  D  V  FLV+S AQAGK D+AK+L+++    + +++SF YN LLN LV   
Sbjct: 118  YMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGG 177

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            +V EAI  F++ NL     P+T +FNI++RGLCR+G+++  FELFN M SF C  DVVTY
Sbjct: 178  KVHEAIFLFKE-NLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTY 236

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI G C+A ++D+  +LL ++QS+   SPDV+TYTS+ISG+ KLGK+E AS L +EMI
Sbjct: 237  NTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMI 296

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              GI P   TFN+LI+GFGK+GN  +A AM+E M S  C+PDVVTFTSLIDGYCRTG I 
Sbjct: 297  RSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIR 356

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
             G+++W+ M A+N+SPN YT+SV+INALCK+NR++EARDLLRQL+  ++ P+PFIYNPVI
Sbjct: 357  LGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVI 416

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAGNV+EANVI+ EMEEKRC PDK TFT LIIGHCMKGRM EA+ +F KM
Sbjct: 417  DGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKM 470


>gb|EXB38956.1| hypothetical protein L484_027391 [Morus notabilis]
          Length = 570

 Score =  479 bits (1234), Expect = e-133
 Identities = 241/415 (58%), Positives = 306/415 (73%), Gaps = 6/415 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGN-PKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVF 177
            PSI F V+ RL N P L L+FFE  + N   +N    TYN L++SLCQ G H++A K VF
Sbjct: 103  PSISFEVIKRLNNNPNLGLKFFELSRANLS-VNHSFSTYNLLIRSLCQMGFHDSA-KFVF 160

Query: 178  D-----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGN 342
            D     G+ PD S  +FLV   A+ GKLD  ++LL      +I+ + F Y++L N+LV N
Sbjct: 161  DCMRIDGHSPDNSTIEFLVCVFAKVGKLDSCEKLL-----EEIRASKFVYSSLFNVLVKN 215

Query: 343  NRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVT 522
            N+V EA+C F+ Q +   F PDT +FNI++ GLC +G++  AFE FN MG F CS DVVT
Sbjct: 216  NKVYEAVCLFRKQ-IGSHFVPDTWTFNILIGGLCGVGEVHSAFEFFNDMGKFRCSPDVVT 274

Query: 523  YNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEM 702
            YNTLI G CR  +VD+G +LL ++Q +  FSP+V T+TSVI GYCKLG+MEEASAL DEM
Sbjct: 275  YNTLISGLCRTNEVDRGCDLLREVQLRGDFSPNVRTFTSVILGYCKLGRMEEASALFDEM 334

Query: 703  INKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVI 882
            ++ G  P + TFN+LI+ F KVG+  SA+A+YE ML  G  PDVVTFTSLIDGYCR G +
Sbjct: 335  MDSGTRPTTVTFNVLIDAFSKVGDMASAIALYEKMLFHGYRPDVVTFTSLIDGYCRVGQL 394

Query: 883  EEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPV 1062
              G++LW EM  +N+SPN YT+SV+I+ALCK NRL+EARDLLRQL   NIVP+PF+YNPV
Sbjct: 395  NRGLKLWCEMSVRNVSPNGYTYSVVIHALCKVNRLHEARDLLRQLNCTNIVPKPFMYNPV 454

Query: 1063 IDGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            IDGFCKAGNV+EAN+I+ EMEEKRCNPDK TFT LI+G+CMKGRM +AI +F+KM
Sbjct: 455  IDGFCKAGNVDEANMIVAEMEEKRCNPDKMTFTILILGNCMKGRMVDAIGVFYKM 509



 Score = 87.8 bits (216), Expect = 9e-15
 Identities = 57/241 (23%), Positives = 120/241 (49%), Gaps = 5/241 (2%)
 Frame = +1

Query: 103  VKTYNFLVKSLCQTGLHEAASKLVFDGYFPDGS-----VFDFLVSSCAQAGKLDIAKRLL 267
            V+T+  ++   C+ G  E AS L FD     G+      F+ L+ + ++ G +  A  L 
Sbjct: 308  VRTFTSVILGYCKLGRMEEASAL-FDEMMDSGTRPTTVTFNVLIDAFSKVGDMASAIALY 366

Query: 268  VQACLSKIKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCR 447
             +      + +  T+ +L++      +++  +  + + ++R    P+  ++++V+  LC+
Sbjct: 367  EKMLFHGYRPDVVTFTSLIDGYCRVGQLNRGLKLWCEMSVR-NVSPNGYTYSVVIHALCK 425

Query: 448  LGKLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVV 627
            + +L  A +L   +   N       YN +IDGFC+A +VD+   ++ +++ K   +PD +
Sbjct: 426  VNRLHEARDLLRQLNCTNIVPKPFMYNPVIDGFCKAGNVDEANMIVAEMEEKR-CNPDKM 484

Query: 628  TYTSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENM 807
            T+T +I G C  G+M +A  +  +M+  G  P+  T + L++   K G    A  + E +
Sbjct: 485  TFTILILGNCMKGRMVDAIGVFYKMLAVGCAPDKITVHCLMSCLLKAGMPNEAFHIKETV 544

Query: 808  L 810
            +
Sbjct: 545  M 545


>ref|XP_006381622.1| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|550336330|gb|ERP59419.1|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 511

 Score =  474 bits (1221), Expect = e-131
 Identities = 232/414 (56%), Positives = 301/414 (72%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            P I F V+ R  NPK+  +F EF ++N   +N    TYN L++SLCQ G H+  + +VFD
Sbjct: 40   PLIAFEVIKRFNNPKVGFKFLEFSRLNLN-VNHCYSTYNLLMRSLCQMGHHDLVN-IVFD 97

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G+ PD  +  FLV+  AQA   D+ K+LL +    ++++NSF YNNLL++LV  N
Sbjct: 98   YMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQN 157

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            +V EAI  F++        PDT +FNI++RGLCR+G +D AFE+F  M SF C  DVVTY
Sbjct: 158  QVHEAIYLFKEYLAMQS--PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTY 215

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI+G C+A +V +G EL  +IQS++  SPD+VTYTS+ISG+CK GKM+EAS L +EM+
Sbjct: 216  NTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMM 275

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              GI PN  TFN+LI+GFGK+GN   A AMY  M    C  DVVTFTSLIDGYCR G + 
Sbjct: 276  RSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVN 335

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
             G++ WN M  +N+SP  YT++VLINALCKENRLNEARD L Q++  +I+P+PF+YNPVI
Sbjct: 336  HGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVI 395

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAGNV+E NVIL+EMEEKRC+PDK TFT LIIGHC+KGRM EAI++F++M
Sbjct: 396  DGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRM 449


>gb|EYU18527.1| hypothetical protein MIMGU_mgv1a003955mg [Mimulus guttatus]
          Length = 552

 Score =  473 bits (1216), Expect = e-131
 Identities = 247/424 (58%), Positives = 309/424 (72%), Gaps = 15/424 (3%)
 Frame = +1

Query: 1    PSIVFGVV----TRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASK 168
            PS+ F VV    +RL NP LA  FF   ++    ++    T++ L++SLCQ G H++A +
Sbjct: 72   PSVAFAVVYHINSRLNNPDLAFTFFRCSRLRLNLIH-LEPTFDLLLRSLCQMGRHDSA-E 129

Query: 169  LVF-----DGYFPDGSVFDFLVSSCAQAGKLDIAKRLLV---QACLSKIK-VNSFTYNNL 321
            LV+     DG+ PD SV DF+VSS A AGK  IA+ +L+   + C  K + V+SF YNN 
Sbjct: 130  LVYQYMKSDGFLPDSSVLDFVVSSFANAGKFRIAEEILIARAEYCNEKDELVSSFVYNNF 189

Query: 322  LNILVGNNRVDEAICFFQDQNLRL-GFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSF 498
            L++L   NR+D+A+ FF+   LRL  FCPDTCSFNIV+RGLCR  K+D AFE F+ M SF
Sbjct: 190  LSMLTNKNRIDDAVLFFKSHILRLKSFCPDTCSFNIVMRGLCRASKVDKAFEFFDVMRSF 249

Query: 499  NCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEE 678
            +CS D+VTYNTLI+G CR   VD+  ELL +I+ ++ FS DVVTYTSVISGYCKLGK + 
Sbjct: 250  SCSPDLVTYNTLINGLCRVGKVDRAEELLREIKVQSEFSADVVTYTSVISGYCKLGKTDA 309

Query: 679  ASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLID 858
            A+ L +EMIN GI PN FTFN +I+GFGK G   SA  MYE M + G  PDVVTFTSLID
Sbjct: 310  AAFLFEEMINNGIRPNLFTFNAIIDGFGKKGEVASASKMYERMTATGFRPDVVTFTSLID 369

Query: 859  GYCRTGVIEEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWR-NIV 1035
            G+CR G + +G+ L NEM  K +SPN +TFSVLI+ALCKENRLNEARDLL QL+WR +IV
Sbjct: 370  GHCRCGDLGQGIHLLNEMNEKRVSPNVFTFSVLISALCKENRLNEARDLLNQLKWREDIV 429

Query: 1036 PRPFIYNPVIDGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISL 1215
            P PF+YNPVIDG+CKAGNV+EAN I+ EME K C  DK TFT LI+GHCMKGRM EAI +
Sbjct: 430  PPPFVYNPVIDGYCKAGNVDEANAIVAEMEAKGCVHDKMTFTILILGHCMKGRMFEAIGM 489

Query: 1216 FHKM 1227
            ++KM
Sbjct: 490  YNKM 493



 Score =  142 bits (358), Expect = 3e-31
 Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 6/301 (1%)
 Frame = +1

Query: 4    SIVFGVVTRLGNPKLALRFFEFCQ-VNCQELNDFVKTYNFLVKSLCQTGLHEAASKL--- 171
            +IV   + R      A  FF+  +  +C    D V TYN L+  LC+ G  + A +L   
Sbjct: 224  NIVMRGLCRASKVDKAFEFFDVMRSFSCSP--DLV-TYNTLINGLCRVGKVDRAEELLRE 280

Query: 172  --VFDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
              V   +  D   +  ++S   + GK D A  L  +   + I+ N FT+N +++      
Sbjct: 281  IKVQSEFSADVVTYTSVISGYCKLGKTDAAAFLFEEMINNGIRPNLFTFNAIIDGFGKKG 340

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
             V  A   ++      GF PD  +F  ++ G CR G L     L N M     S +V T+
Sbjct: 341  EVASASKMYERMTAT-GFRPDVVTFTSLIDGHCRCGDLGQGIHLLNEMNEKRVSPNVFTF 399

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            + LI   C+   +++  +LL Q++ +    P    Y  VI GYCK G ++EA+A++ EM 
Sbjct: 400  SVLISALCKENRLNEARDLLNQLKWREDIVPPPFVYNPVIDGYCKAGNVDEANAIVAEME 459

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
             KG + +  TF ILI G    G    A+ MY  MLS GCVPD +T +SLI    + G+  
Sbjct: 460  AKGCVHDKMTFTILILGHCMKGRMFEAIGMYNKMLSVGCVPDNITMSSLISCLRKAGMAR 519

Query: 886  E 888
            E
Sbjct: 520  E 520


>ref|XP_004230611.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Solanum lycopersicum]
          Length = 550

 Score =  452 bits (1163), Expect = e-124
 Identities = 237/424 (55%), Positives = 309/424 (72%), Gaps = 15/424 (3%)
 Frame = +1

Query: 1    PSIVFGVV----TRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASK 168
            P I F V+    T L NP+LA RF +  ++N   ++  + ++N L++SL Q G H++A  
Sbjct: 67   PHIAFTVIHHINTNLNNPRLAFRFLQCTRINLNLIH-CIGSFNLLLRSLSQMGFHDSAM- 124

Query: 169  LVF-----DGYFPDGSVFDFLVSSCAQAGKLDIAKRLLV-QACLSKIK---VNSFTYNNL 321
            LVF     DGY  + S+ + +V + A AGK +IAK +L+ QA L + +   V  F +N+L
Sbjct: 125  LVFKYMKADGYLLENSILESVVLALANAGKFEIAKEILISQAELGREEGSIVRPFVHNSL 184

Query: 322  LNILVGNNRVDEAICFFQDQNLRLG-FCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSF 498
            L++L+  +RVDEA+ FF+   LR     PDTC+FN V+RGLCR+G +D AFE FN MGSF
Sbjct: 185  LSLLMKRSRVDEAVDFFKHHILRSERLFPDTCTFNTVIRGLCRVGGVDKAFEFFNDMGSF 244

Query: 499  NCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEE 678
             CS D VTYNTLI+G C    V++   LL  +Q + G SPDVVTYTS+ISGYCKL +M+E
Sbjct: 245  GCSPDTVTYNTLINGLCAVGQVNRAQGLLGNLQLQDGLSPDVVTYTSLISGYCKLSRMDE 304

Query: 679  ASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLID 858
            A  L+DEMI  GI PN  TFNILINGFGK+G+  SA+ MY  M + G  PDVVTFTSLID
Sbjct: 305  AINLMDEMITYGISPNLVTFNILINGFGKIGDMFSAIKMYGKMCAVGYPPDVVTFTSLID 364

Query: 859  GYCRTGVIEEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWR-NIV 1035
            GYCRTG +++G++LW++M ++N+SPN YTFSVLI+AL KENRLNEAR+LLRQL+ R +IV
Sbjct: 365  GYCRTGELDQGLKLWDDMNSRNLSPNLYTFSVLISALSKENRLNEARELLRQLKSRDDIV 424

Query: 1036 PRPFIYNPVIDGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISL 1215
            P+PF+YNPV+DGFCKAGN++EANVI  EME K C  DK TFT LI+GHCMKGRM EA+++
Sbjct: 425  PQPFVYNPVLDGFCKAGNLSEANVIAAEMESKGCCHDKITFTILILGHCMKGRMLEALAI 484

Query: 1216 FHKM 1227
            F KM
Sbjct: 485  FDKM 488



 Score =  141 bits (356), Expect = 5e-31
 Identities = 85/281 (30%), Positives = 144/281 (51%), Gaps = 5/281 (1%)
 Frame = +1

Query: 109  TYNFLVKSLCQTGLHEAASKLVF-----DGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQ 273
            TYN L+  LC  G    A  L+      DG  PD   +  L+S   +  ++D A  L+ +
Sbjct: 252  TYNTLINGLCAVGQVNRAQGLLGNLQLQDGLSPDVVTYTSLISGYCKLSRMDEAINLMDE 311

Query: 274  ACLSKIKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLG 453
                 I  N  T+N L+N       +  AI  +  +   +G+ PD  +F  ++ G CR G
Sbjct: 312  MITYGISPNLVTFNILINGFGKIGDMFSAIKMY-GKMCAVGYPPDVVTFTSLIDGYCRTG 370

Query: 454  KLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTY 633
            +LD   +L++ M S N S ++ T++ LI    +   +++  ELL Q++S+    P    Y
Sbjct: 371  ELDQGLKLWDDMNSRNLSPNLYTFSVLISALSKENRLNEARELLRQLKSRDDIVPQPFVY 430

Query: 634  TSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLS 813
              V+ G+CK G + EA+ +  EM +KG   +  TF ILI G    G    A+A+++ MLS
Sbjct: 431  NPVLDGFCKAGNLSEANVIAAEMESKGCCHDKITFTILILGHCMKGRMLEALAIFDKMLS 490

Query: 814  KGCVPDVVTFTSLIDGYCRTGVIEEGMRLWNEMGAKNISPN 936
             GCVPD +T + L     + G+++E  ++   + +K+++P+
Sbjct: 491  LGCVPDDITISCLTSCLLKAGMVKEAYKV-RLIPSKDLNPD 530


>ref|XP_006351831.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            isoform X1 [Solanum tuberosum]
            gi|565370447|ref|XP_006351832.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At2g06000-like isoform X2 [Solanum tuberosum]
          Length = 550

 Score =  446 bits (1147), Expect = e-122
 Identities = 234/424 (55%), Positives = 306/424 (72%), Gaps = 15/424 (3%)
 Frame = +1

Query: 1    PSIVFGVV----TRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASK 168
            P I F V+    T L NP+LA RF +  ++N   L   + ++N L++SL Q G H++A  
Sbjct: 67   PHIAFTVIHHINTNLNNPRLAFRFLQCTRINLN-LVHCIGSFNLLLRSLSQMGFHDSAM- 124

Query: 169  LVF-----DGYFPDGSVFDFLVSSCAQAGKLDIAKRLLV-QACLSKIK---VNSFTYNNL 321
            LVF     DGY  + S+ + +V + A AGK +IAK +L+ QA L + +   V  F +N+L
Sbjct: 125  LVFKFMKADGYLLENSILESVVLALANAGKFEIAKEILISQAELGREEGRIVRPFVHNSL 184

Query: 322  LNILVGNNRVDEAICFFQDQNLRLG-FCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSF 498
            L++L+  +RVDEA+ FF+   LR     PDTC+FN V+RGLCR+G +D AFE FN MGSF
Sbjct: 185  LSLLMKRSRVDEAVDFFKHHILRSERLFPDTCTFNTVIRGLCRVGGVDKAFEFFNDMGSF 244

Query: 499  NCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEE 678
             C  D VTYNTLI+G C    V++   LL  ++ + G SPDVVTYTSVI+GYCKLG+M+E
Sbjct: 245  GCFPDTVTYNTLINGLCSVGQVNRARGLLGNLELQDGLSPDVVTYTSVIAGYCKLGRMDE 304

Query: 679  ASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLID 858
            A  L+DEM   GI PN  TFNILINGFGK+G+  SA+ MY  M + G  PDVVTFTSLID
Sbjct: 305  AINLMDEMTTYGISPNLVTFNILINGFGKIGDMFSAIQMYGRMCAVGYPPDVVTFTSLID 364

Query: 859  GYCRTGVIEEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWR-NIV 1035
            GYCRTG +++G++LW+EM  +N+SPN YTFS+LI+AL KENRLNEAR+LLRQL+ R +IV
Sbjct: 365  GYCRTGELDQGLKLWDEMNTRNLSPNLYTFSILISALSKENRLNEARELLRQLKSRDDIV 424

Query: 1036 PRPFIYNPVIDGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISL 1215
            P+PF+YNPV+DGFCKAGN+++ANVI  EME + C  DK TFT LI+GHCMKGRM EA+++
Sbjct: 425  PQPFVYNPVLDGFCKAGNLSKANVIAAEMESRGCCHDKITFTILILGHCMKGRMLEAMAI 484

Query: 1216 FHKM 1227
            F KM
Sbjct: 485  FDKM 488



 Score =  138 bits (347), Expect = 6e-30
 Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 7/271 (2%)
 Frame = +1

Query: 109  TYNFLVKSLCQTGLHEAASKLVF-----DGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQ 273
            TYN L+  LC  G    A  L+      DG  PD   +  +++   + G++D A  L+ +
Sbjct: 252  TYNTLINGLCSVGQVNRARGLLGNLELQDGLSPDVVTYTSVIAGYCKLGRMDEAINLMDE 311

Query: 274  ACLSKIKVNSFTYNNLLNILVGNNRVDEAICFFQ--DQNLRLGFCPDTCSFNIVVRGLCR 447
                 I  N  T+N L+N   G  ++ +     Q   +   +G+ PD  +F  ++ G CR
Sbjct: 312  MTTYGISPNLVTFNILIN---GFGKIGDMFSAIQMYGRMCAVGYPPDVVTFTSLIDGYCR 368

Query: 448  LGKLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVV 627
             G+LD   +L++ M + N S ++ T++ LI    +   +++  ELL Q++S+    P   
Sbjct: 369  TGELDQGLKLWDEMNTRNLSPNLYTFSILISALSKENRLNEARELLRQLKSRDDIVPQPF 428

Query: 628  TYTSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENM 807
             Y  V+ G+CK G + +A+ +  EM ++G   +  TF ILI G    G    AMA+++ M
Sbjct: 429  VYNPVLDGFCKAGNLSKANVIAAEMESRGCCHDKITFTILILGHCMKGRMLEAMAIFDKM 488

Query: 808  LSKGCVPDVVTFTSLIDGYCRTGVIEEGMRL 900
            LS GCVPD +T + L     + G+++E  ++
Sbjct: 489  LSLGCVPDDITVSCLTSCLLKAGMVKEAYKV 519


>ref|XP_006297396.1| hypothetical protein CARUB_v10013421mg [Capsella rubella]
            gi|565479514|ref|XP_006297397.1| hypothetical protein
            CARUB_v10013421mg [Capsella rubella]
            gi|482566105|gb|EOA30294.1| hypothetical protein
            CARUB_v10013421mg [Capsella rubella]
            gi|482566106|gb|EOA30295.1| hypothetical protein
            CARUB_v10013421mg [Capsella rubella]
          Length = 535

 Score =  440 bits (1131), Expect = e-121
 Identities = 225/415 (54%), Positives = 292/415 (70%), Gaps = 6/415 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGN--PKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV 174
            P I F VV +L N  P L  RF+EF +      + F  TYN L +SLC+ G+H+ A ++ 
Sbjct: 69   PFIAFEVVKKLDNNHPHLGFRFWEFSRFKLNIRHSFW-TYNVLTRSLCKAGMHDLAGQMF 127

Query: 175  ----FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGN 342
                 DG  P+  +  FLVSS A+ GKL  A  LL+Q+   +++      N+LLN LV  
Sbjct: 128  ECMRSDGVSPNSRLLGFLVSSFAEKGKLQFATALLLQSY--EVERCCMVVNSLLNTLVKL 185

Query: 343  NRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVT 522
            +RVD+A+  F D++LR   C DT +FNI++RGLC +GK + A EL   M  F CS D+VT
Sbjct: 186  DRVDDAMKLF-DKHLRFQCCNDTKTFNILIRGLCSVGKGEKALELLGEMSGFGCSPDIVT 244

Query: 523  YNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEM 702
            YNTLI GFC++ ++ K  E+L  ++S +G SPDVVTYTS+ISGYCK GKM+EA  LLD+M
Sbjct: 245  YNTLIKGFCKSNELAKANEMLNDVKSSSGCSPDVVTYTSMISGYCKAGKMQEAYLLLDDM 304

Query: 703  INKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVI 882
            +  GI P + TFN+L++G+ K G   SA  +   M+S GC PDVVTFTSLIDGYCR G +
Sbjct: 305  LGLGIYPTTITFNVLVDGYAKAGEMTSAEDIRGKMISFGCFPDVVTFTSLIDGYCRAGQV 364

Query: 883  EEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPV 1062
             +G RLW EM AK + PN +T+S+LINALCKEN L +AR+LL QL  ++I+ +PF+YNPV
Sbjct: 365  NQGFRLWEEMNAKGMLPNEFTYSILINALCKENSLLKARELLGQLASKDIITKPFMYNPV 424

Query: 1063 IDGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            IDGFCKAG VNEANVI+EEME+K+C PDK TFT LIIGHCMKGRM EA+S+FHKM
Sbjct: 425  IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKM 479



 Score =  162 bits (410), Expect = 3e-37
 Identities = 99/305 (32%), Positives = 162/305 (53%), Gaps = 5/305 (1%)
 Frame = +1

Query: 106  KTYNFLVKSLCQTGLHEAASKLVFD----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQ 273
            KT+N L++ LC  G  E A +L+ +    G  PD   ++ L+    ++ +L  A  +L  
Sbjct: 208  KTFNILIRGLCSVGKGEKALELLGEMSGFGCSPDIVTYNTLIKGFCKSNELAKANEMLND 267

Query: 274  ACLSK-IKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRL 450
               S     +  TY ++++      ++ EA     D  L LG  P T +FN++V G  + 
Sbjct: 268  VKSSSGCSPDVVTYTSMISGYCKAGKMQEAYLLLDDM-LGLGIYPTTITFNVLVDGYAKA 326

Query: 451  GKLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVT 630
            G++  A ++   M SF C  DVVT+ +LIDG+CRA  V++G+ L  ++ +K G  P+  T
Sbjct: 327  GEMTSAEDIRGKMISFGCFPDVVTFTSLIDGYCRAGQVNQGFRLWEEMNAK-GMLPNEFT 385

Query: 631  YTSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENML 810
            Y+ +I+  CK   + +A  LL ++ +K I+   F +N +I+GF K G    A  + E M 
Sbjct: 386  YSILINALCKENSLLKARELLGQLASKDIITKPFMYNPVIDGFCKAGKVNEANVIVEEME 445

Query: 811  SKGCVPDVVTFTSLIDGYCRTGVIEEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLN 990
             K C PD +TFT LI G+C  G + E + ++++M A   SP+  T + L++ L K     
Sbjct: 446  KKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVNSLLSCLLKAGMAE 505

Query: 991  EARDL 1005
            EA  L
Sbjct: 506  EAYHL 510


>ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331650|gb|EFH62069.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 536

 Score =  440 bits (1131), Expect = e-121
 Identities = 222/414 (53%), Positives = 294/414 (71%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRL-GNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV- 174
            P I F VV +L  NP +  RF+EF +      + F  TYN L +SLC+ G+H+ A ++  
Sbjct: 69   PFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFW-TYNLLTRSLCKAGMHDLAGQMFE 127

Query: 175  ---FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                DG  P+  +  FLVSS A+ GKL  A  LL+Q+   +++      N+LLN LV  +
Sbjct: 128  CMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSY--EVEGCCMVVNSLLNTLVKLD 185

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            RV++A+  F++ +LR   C DT +FNI++RGLC +GK + A EL  GM  F C  D+VTY
Sbjct: 186  RVEDAMKLFEE-HLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTY 244

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI GFC++ ++ K  E+   ++S +G SPDVVTYTS+ISGYCK GKM+EAS LLD+M+
Sbjct: 245  NTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDML 304

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              GI P + TFN+L++G+ K G   +A  +   M+S GC PDVVTFTSLIDGYCR G + 
Sbjct: 305  RLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVN 364

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            +G RLW EM A+ + PNA+T+S+LINALCKENRL +AR+LL QL  ++I+P+PF+YNPVI
Sbjct: 365  QGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAG VNEA VI+EEME+K+C PDK TFT LIIGHCMKGRM EA+S+FHKM
Sbjct: 425  DGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKM 478


>ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Glycine max]
          Length = 544

 Score =  439 bits (1128), Expect = e-120
 Identities = 221/414 (53%), Positives = 289/414 (69%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            PS V  VV R  NP L  +FF F +      + F  TYN L++SLCQ GLH +A KL++D
Sbjct: 75   PSHVLEVVKRFNNPNLGFKFFRFTRERLSMSHSFW-TYNMLLRSLCQAGLHNSA-KLLYD 132

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G  PD  +  FLVSS A A + D++K LL +A  S ++V+   YNN LNIL+ +N
Sbjct: 133  SMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHN 192

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            R+D+AIC F++  +R   C D  +FNI++RGLC  G +D AFEL   MGSF CS D+VTY
Sbjct: 193  RLDDAICLFREL-MRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTY 251

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            N L+ G CR   VD+  +LL ++  K  F+P+VV+YT+VISGYC+L KM+EAS+L  EM+
Sbjct: 252  NILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMV 311

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              G  PN FTF+ L++GF K G+  SA+ M++ +L  GC P+V+T TSLI+GYCR G + 
Sbjct: 312  RSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVN 371

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
             G+ LW EM A+NI  N YT+SVLI+ALCK NRL EAR+LLR L+  +IVP  F+YNPVI
Sbjct: 372  HGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVI 431

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DG+CK+GN++EAN I+ EMEEK C PDK TFT LIIGHCMKGR  EAI +F+KM
Sbjct: 432  DGYCKSGNIDEANAIVAEMEEK-CKPDKLTFTILIIGHCMKGRTPEAIGIFYKM 484



 Score =  135 bits (340), Expect = 4e-29
 Identities = 89/301 (29%), Positives = 157/301 (52%), Gaps = 5/301 (1%)
 Frame = +1

Query: 109  TYNFLVKSLCQTGLHEAASKLVFD----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQA 276
            T+N L++ LC  G  + A +L+ D    G  PD   ++ L+    +  ++D A+ LL + 
Sbjct: 215  TFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEV 274

Query: 277  CLS-KIKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLG 453
            CL  +   N  +Y  +++     +++DEA   F +  +R G  P+  +F+ +V G  + G
Sbjct: 275  CLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEM-VRSGTKPNVFTFSALVDGFVKAG 333

Query: 454  KLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTY 633
             +  A  +   +    C+ +V+T  +LI+G+CRA  V+ G +L  ++ ++     ++ TY
Sbjct: 334  DMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARN-IPANLYTY 392

Query: 634  TSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLS 813
            + +IS  CK  +++EA  LL  +    I+P +F +N +I+G+ K GN   A A+   M  
Sbjct: 393  SVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEE 452

Query: 814  KGCVPDVVTFTSLIDGYCRTGVIEEGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNE 993
            K C PD +TFT LI G+C  G   E + ++ +M A   +P+  T   L + L K     E
Sbjct: 453  K-CKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGE 511

Query: 994  A 996
            A
Sbjct: 512  A 512



 Score = 78.2 bits (191), Expect = 7e-12
 Identities = 56/243 (23%), Positives = 110/243 (45%), Gaps = 8/243 (3%)
 Frame = +1

Query: 103 VKTYNFLVKSLCQTGLHEAASKLVFD----GYFPDGSVFDFLVSSCAQAGKLDIA----K 258
           V +Y  ++   C+    + AS L ++    G  P+   F  LV    +AG +  A    K
Sbjct: 284 VVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHK 343

Query: 259 RLLVQACLSKIKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRG 438
           ++L   C      N  T  +L+N       V+  +  +++ N R     +  ++++++  
Sbjct: 344 KILFHGCAP----NVITLTSLINGYCRAGWVNHGLDLWREMNAR-NIPANLYTYSVLISA 398

Query: 439 LCRLGKLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSP 618
           LC+  +L  A  L   +   +       YN +IDG+C++ ++D+   ++ +++ K    P
Sbjct: 399 LCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEKC--KP 456

Query: 619 DVVTYTSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMY 798
           D +T+T +I G+C  G+  EA  +  +M+  G  P+  T   L +   K G    A  + 
Sbjct: 457 DKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIK 516

Query: 799 ENM 807
           E +
Sbjct: 517 ETL 519


>dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  437 bits (1125), Expect = e-120
 Identities = 222/414 (53%), Positives = 293/414 (70%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRL-GNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV- 174
            P I F VV +L  NP +  RF+EF +      + F  TYN L +SLC+ GLH+ A ++  
Sbjct: 69   PFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFW-TYNLLTRSLCKAGLHDLAGQMFE 127

Query: 175  ---FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                DG  P+  +  FLVSS A+ GKL  A  LL+Q+   +++      N+LLN LV  +
Sbjct: 128  CMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSF--EVEGCCMVVNSLLNTLVKLD 185

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            RV++A+  F D++LR   C DT +FNI++RGLC +GK + A EL   M  F C  D+VTY
Sbjct: 186  RVEDAMKLF-DEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTY 244

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI GFC++ +++K  E+   ++S +  SPDVVTYTS+ISGYCK GKM EAS+LLD+M+
Sbjct: 245  NTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML 304

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              GI P + TFN+L++G+ K G   +A  +   M+S GC PDVVTFTSLIDGYCR G + 
Sbjct: 305  RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVS 364

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            +G RLW EM A+ + PNA+T+S+LINALC ENRL +AR+LL QL  ++I+P+PF+YNPVI
Sbjct: 365  QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAG VNEANVI+EEME+K+C PDK TFT LIIGHCMKGRM EA+S+FHKM
Sbjct: 425  DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKM 478


>ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|42570711|ref|NP_973429.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
            gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein
            [Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|330250896|gb|AEC05990.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
            gi|330250897|gb|AEC05991.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  437 bits (1125), Expect = e-120
 Identities = 222/414 (53%), Positives = 293/414 (70%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRL-GNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV- 174
            P I F VV +L  NP +  RF+EF +      + F  TYN L +SLC+ GLH+ A ++  
Sbjct: 69   PFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFW-TYNLLTRSLCKAGLHDLAGQMFE 127

Query: 175  ---FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                DG  P+  +  FLVSS A+ GKL  A  LL+Q+   +++      N+LLN LV  +
Sbjct: 128  CMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSF--EVEGCCMVVNSLLNTLVKLD 185

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            RV++A+  F D++LR   C DT +FNI++RGLC +GK + A EL   M  F C  D+VTY
Sbjct: 186  RVEDAMKLF-DEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTY 244

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI GFC++ +++K  E+   ++S +  SPDVVTYTS+ISGYCK GKM EAS+LLD+M+
Sbjct: 245  NTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML 304

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              GI P + TFN+L++G+ K G   +A  +   M+S GC PDVVTFTSLIDGYCR G + 
Sbjct: 305  RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVS 364

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            +G RLW EM A+ + PNA+T+S+LINALC ENRL +AR+LL QL  ++I+P+PF+YNPVI
Sbjct: 365  QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DGFCKAG VNEANVI+EEME+K+C PDK TFT LIIGHCMKGRM EA+S+FHKM
Sbjct: 425  DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKM 478


>ref|XP_006577946.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            isoform X1 [Glycine max] gi|571448762|ref|XP_006577947.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g06000-like isoform X2 [Glycine max]
            gi|571448764|ref|XP_006577948.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At2g06000-like isoform X3 [Glycine max]
            gi|571448766|ref|XP_006577949.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At2g06000-like isoform X4 [Glycine max]
          Length = 510

 Score =  436 bits (1121), Expect = e-119
 Identities = 216/414 (52%), Positives = 288/414 (69%), Gaps = 5/414 (1%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLVFD 180
            PS+V+ VV RL  P L  +F EFC+      + ++ TY+ L++SLC++ LH  A K+V+D
Sbjct: 38   PSLVYEVVNRLHIPNLGFKFVEFCRHKLHMSHSYL-TYSLLLRSLCRSNLHHTA-KVVYD 95

Query: 181  -----GYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNN 345
                 G  PD  +  FLV S A  G+LD+++ LL     + + VN+  YN+L N+L+  N
Sbjct: 96   WMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQN 155

Query: 346  RVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTY 525
            +V +A+  F++  +RL + P T + NI++RGLCR G++D AF L N + SF C  DV+TY
Sbjct: 156  KVVDAVVLFREL-IRLRYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITY 214

Query: 526  NTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMI 705
            NTLI G CR  +VD+   LL ++     F+PDVV+YT++ISGYCK  KMEE + L  EMI
Sbjct: 215  NTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMI 274

Query: 706  NKGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIE 885
              G  PN+FTFN LI GFGK+G+  SA+A+YE ML +GCVPDV TFTSLI+GY R G + 
Sbjct: 275  RSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVH 334

Query: 886  EGMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVI 1065
            + M +W++M  KNI    YTFSVL++ LC  NRL++ARD+LR L   +IVP+PFIYNPVI
Sbjct: 335  QAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVI 394

Query: 1066 DGFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            DG+CK+GNV+EAN I+ EME  RC PDK TFT LIIGHCMKGRM EAI +FHKM
Sbjct: 395  DGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKM 448



 Score =  115 bits (287), Expect = 5e-23
 Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 5/271 (1%)
 Frame = +1

Query: 103  VKTYNFLVKSLCQTGLHEAASKLV----FDGYF-PDGSVFDFLVSSCAQAGKLDIAKRLL 267
            V TYN L+  LC+    + A  L+     +G F PD   +  ++S   +  K++    L 
Sbjct: 211  VITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLF 270

Query: 268  VQACLSKIKVNSFTYNNLLNILVGNNRVDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCR 447
             +   S    N+FT+N L+        +  A+  ++   ++ G  PD  +F  ++ G  R
Sbjct: 271  GEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQ-GCVPDVATFTSLINGYFR 329

Query: 448  LGKLDMAFELFNGMGSFNCSSDVVTYNTLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVV 627
            LG++  A ++++ M   N  + + T++ L+ G C    + K  ++L ++ +++   P   
Sbjct: 330  LGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDIL-RLLNESDIVPQPF 388

Query: 628  TYTSVISGYCKLGKMEEASALLDEMINKGIMPNSFTFNILINGFGKVGNTRSAMAMYENM 807
             Y  VI GYCK G ++EA+ ++ EM      P+  TF ILI G    G    A+ ++  M
Sbjct: 389  IYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKM 448

Query: 808  LSKGCVPDVVTFTSLIDGYCRTGVIEEGMRL 900
            L+ GC PD +T  +L     + G+  E  R+
Sbjct: 449  LAVGCAPDEITVNNLRSCLLKAGMPGEAARV 479


>ref|XP_006396122.1| hypothetical protein EUTSA_v10002477mg [Eutrema salsugineum]
            gi|557096393|gb|ESQ36901.1| hypothetical protein
            EUTSA_v10002477mg [Eutrema salsugineum]
          Length = 535

 Score =  433 bits (1114), Expect = e-119
 Identities = 222/413 (53%), Positives = 289/413 (69%), Gaps = 4/413 (0%)
 Frame = +1

Query: 1    PSIVFGVVTRLGNPKLALRFFEFCQVNCQELNDFVKTYNFLVKSLCQTGLHEAASKLV-- 174
            P I F VV +L NP +  RF+EF +      + F  TYN L +SLC+ GLH+ A K+   
Sbjct: 69   PFIAFEVVKKLDNPHIGFRFWEFSRFKLNIRHSFW-TYNLLTRSLCKAGLHDLAGKMFEC 127

Query: 175  --FDGYFPDGSVFDFLVSSCAQAGKLDIAKRLLVQACLSKIKVNSFTYNNLLNILVGNNR 348
               DG  P+  +  FLVSS A+ GKL  A  LL+Q+   +++ +S   N+LL+ LV  +R
Sbjct: 128  MKSDGVSPNSRLLGFLVSSFAEKGKLHFATALLLQSY--EVEGSSMVVNSLLHTLVRLDR 185

Query: 349  VDEAICFFQDQNLRLGFCPDTCSFNIVVRGLCRLGKLDMAFELFNGMGSFNCSSDVVTYN 528
            V++A+  F D +LR   C DT +FNI+++GLC +GK   A +L   M SF  S D+VTYN
Sbjct: 186  VEDAMKLF-DTHLRSQSCNDTRTFNILIQGLCGIGKAHEALKLLGEMSSFGSSPDIVTYN 244

Query: 529  TLIDGFCRAKDVDKGYELLTQIQSKTGFSPDVVTYTSVISGYCKLGKMEEASALLDEMIN 708
            TLI GFC++ +++K  E+  +++S+ G   DVVTYTS++SGYCK GKM EAS LLDEM+ 
Sbjct: 245  TLIKGFCKSNELNKANEIFNEVKSRNGCFRDVVTYTSMMSGYCKAGKMREASLLLDEMVG 304

Query: 709  KGIMPNSFTFNILINGFGKVGNTRSAMAMYENMLSKGCVPDVVTFTSLIDGYCRTGVIEE 888
             G+ P + TFN+L+ G+ K G   SA A+   M S GC PDVVTFT+LIDGYCR G + +
Sbjct: 305  LGMYPTNITFNVLVYGYVKAGEMSSAEAIRRKMDSFGCFPDVVTFTTLIDGYCRVGQVNK 364

Query: 889  GMRLWNEMGAKNISPNAYTFSVLINALCKENRLNEARDLLRQLRWRNIVPRPFIYNPVID 1068
            G  LW EM AK + PNA+T+S+LINALCKENRL +AR+LL QL   +IVP+PF+YNP+ID
Sbjct: 365  GFSLWEEMSAKGMFPNAFTYSILINALCKENRLLKARELLGQLACMDIVPKPFLYNPIID 424

Query: 1069 GFCKAGNVNEANVILEEMEEKRCNPDKFTFTSLIIGHCMKGRMAEAISLFHKM 1227
            GFCKAG VNEANVI+ EME+ RC PDK TFT LIIGHCMKGRM EAIS+FHKM
Sbjct: 425  GFCKAGKVNEANVIVAEMEKFRCKPDKITFTILIIGHCMKGRMCEAISIFHKM 477