BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00012644
         (3747 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  2183   0.0  
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A...  2160   0.0  
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  2149   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  2148   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  2148   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2145   0.0  
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i...  2144   0.0  
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...  2142   0.0  
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...  2141   0.0  
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...  2137   0.0  
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...  2137   0.0  
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...  2136   0.0  
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...  2135   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  2135   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  2135   0.0  
ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phas...  2134   0.0  
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...  2133   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...  2133   0.0  
ref|XP_007138707.1| hypothetical protein PHAVU_009G230400g [Phas...  2132   0.0  
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su...  2132   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 2183 bits (5657), Expect = 0.0
 Identities = 1079/1127 (95%), Positives = 1102/1127 (97%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 54   NTMQEIVDESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 113

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+++KKGHD EEVTE  E   KVFIGKVPIMLRSSYCT+YQ
Sbjct: 114  KAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQE-FTKVFIGKVPIMLRSSYCTVYQ 172

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 173  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 232

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 233  AESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 292

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE
Sbjct: 293  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 352

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 353  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 412

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+AY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 413  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 472

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 473  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 532

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNP+LLVKTL
Sbjct: 533  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 592

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK+DIR LQ RES
Sbjct: 593  RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRES 652

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLV+KGFIEYVD       MISMTINDL+SAR  PEEAYSETYTHCEIHPSLI
Sbjct: 653  PEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLI 712

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 713  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 772

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 773  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 832

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+SQGQAS
Sbjct: 833  LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQAS 892

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 893  RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 952

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 953  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1012

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1013 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1072

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1073 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1132

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1133 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179


>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
            gi|548863150|gb|ERN20505.1| hypothetical protein
            AMTR_s00068p00181410 [Amborella trichopoda]
          Length = 1190

 Score = 2160 bits (5598), Expect = 0.0
 Identities = 1069/1127 (94%), Positives = 1095/1127 (97%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ+DF+ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 48   NTMQEIVDESADIEIRPESQHNPGRQADFVETIYKISFGQIYLSKPMMTESDGETATLFP 107

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHD EE+ E  E + KVFIGKVPIMLRSSYCTL+Q
Sbjct: 108  KAARLRNLTYSAPLYVDVTKRVIKKGHDHEELAEQQE-LTKVFIGKVPIMLRSSYCTLFQ 166

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 167  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 226

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QN+PPS MFVRMLSR SSKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILE
Sbjct: 227  AESQNKPPSSMFVRMLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILE 286

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKE
Sbjct: 287  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKE 346

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLL+CALGRRPEDDRDHYGNKRLDLAGPLLG LFR 
Sbjct: 347  MLPHVGVGEYCETKKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRT 406

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            +FRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 407  MFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 466

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLT++STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 467  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 526

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL
Sbjct: 527  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 586

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK DIR LQQRES
Sbjct: 587  RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRES 646

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             DEG WHDLVAKGFIEYVD       MISMTI+DLVSAR  PEEAYSETYTHCEIHPSLI
Sbjct: 647  PDEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLI 705

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 706  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 765

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 766  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 825

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQAS
Sbjct: 826  LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEEMQGQAS 885

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 886  RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 945

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 946  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1005

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1006 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1065

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1066 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIA 1125

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDI+QVHIPYACKLLFQELMAMAIAPRM T
Sbjct: 1126 IANLKKNSFECRGCKNKTDIIQVHIPYACKLLFQELMAMAIAPRMFT 1172


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score = 2149 bits (5568), Expect = 0.0
 Identities = 1059/1127 (93%), Positives = 1093/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG+QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDF DT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKE
Sbjct: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+AY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI  LQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLVAKGFIEY+D       MISMTINDLV AR  PEEAY++TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQAS
Sbjct: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score = 2148 bits (5565), Expect = 0.0
 Identities = 1058/1127 (93%), Positives = 1093/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG+QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDF DT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKE
Sbjct: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+AY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI  LQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLVAKGFIEY+D       MISMTINDLV AR  PEEAY++TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQAS
Sbjct: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2148 bits (5565), Expect = 0.0
 Identities = 1058/1127 (93%), Positives = 1093/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 294  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI  LQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EGGWHDLVAKGFIEY+D       MISMTI+DLV AR  PEEAYS+TYTHCEIHPSLI
Sbjct: 654  SEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQ+E+QGQ++
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSA 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2145 bits (5558), Expect = 0.0
 Identities = 1053/1127 (93%), Positives = 1094/1127 (97%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 52   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 111

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 112  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 170

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 171  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 230

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 231  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 290

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDF+DT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 291  HICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 350

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LV+TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTL 590

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIK+KDI+ LQQRE+
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRET 650

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLVAKGFIEY+D       MISMTINDLVSAR  PEEAYSETYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLI 710

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDT+AYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRA 770

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIAQDE+QG A+
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAA 890

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIA 1130

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177


>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
            polymerase family protein isoform 1 [Theobroma cacao]
          Length = 1189

 Score = 2144 bits (5556), Expect = 0.0
 Identities = 1056/1127 (93%), Positives = 1092/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 52   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 111

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 112  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 170

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 171  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 230

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 231  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 290

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 291  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 350

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNP++LV TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTL 590

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI  LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 650

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLVAKGFIEY+D       MISMTINDLV AR  PEEAYSETYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLI 710

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQAS
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAS 890

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RY+RRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNIS+ALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISRALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1177


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score = 2142 bits (5549), Expect = 0.0
 Identities = 1058/1128 (93%), Positives = 1090/1128 (96%), Gaps = 1/1128 (0%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF+ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 53   NTMQEIVDESADIEIRPESQHNPGHQSDFVETIYKISFGQIYLSKPMMTESDGETATLFP 112

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 113  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 171

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 172  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 231

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILE
Sbjct: 232  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILE 291

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 292  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 351

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG GE+CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLPHVGTGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTL 591

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DIR LQQRE+
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRET 651

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +E GWHDLV+ GFIEY+D       MISMTINDLV AR  PEEAYSETYTHCEIHPSLI
Sbjct: 652  PEEAGWHDLVSNGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLI 711

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQ-A 2517
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE+QGQ A
Sbjct: 832  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAA 891

Query: 2518 SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 2697
            SRYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRHGQKGT
Sbjct: 892  SRYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGT 951

Query: 2698 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 2877
            VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 952  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1011

Query: 2878 VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRG 3057
            VTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 1012 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1071

Query: 3058 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLI 3237
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLI
Sbjct: 1072 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLI 1131

Query: 3238 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1132 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179


>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
            brachyantha]
          Length = 1184

 Score = 2141 bits (5548), Expect = 0.0
 Identities = 1056/1127 (93%), Positives = 1091/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ++F ET++KISFGQIYLSKPMMTE+DGETATLFP
Sbjct: 48   NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 107

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            K+ARLRNLTYSAPLYVDV+ +VMKKGHD EEVTE  E  PKVFIGKVPIMLRSSYCTL+Q
Sbjct: 108  KSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQ 166

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
             SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 167  QSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 226

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AENQNRP S MFVRMLSRA +KGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILE
Sbjct: 227  AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 286

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 287  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 346

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 347  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 406

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 407  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 466

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 467  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 526

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 527  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 586

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKKK IR LQQRE+
Sbjct: 587  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKKHIRALQQRET 646

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EG WHDLVAKGFIEY+D       MISMTINDLV+ARH PEEAYSETYTHCEIHPSLI
Sbjct: 647  PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLVNARHNPEEAYSETYTHCEIHPSLI 705

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 706  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 765

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 766  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 825

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD++QGQA+
Sbjct: 826  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 885

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 886  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 945

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 946  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1005

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1006 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1065

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1066 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1125

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1126 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1172


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 2137 bits (5537), Expect = 0.0
 Identities = 1052/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ++F ET++KISFGQIYLSKPMMTE+DGETATLFP
Sbjct: 82   NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 141

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            K+ARLRNLTYSAPLYVDV+ +VMKKGHD EEVTE  E  PKVFIGKVPIMLRSSYCTL+Q
Sbjct: 142  KSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQ 200

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
             SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 201  QSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 260

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AENQNRP S MFVRMLSRA +KGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILE
Sbjct: 261  AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 320

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 321  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 380

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 381  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 440

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 441  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 500

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 501  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 560

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 561  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 620

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKK+ IR LQQRE+
Sbjct: 621  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRET 680

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EG WHDLVAKGFIEY+D       MISMTINDL+ ARH PEEAYSETYTHCEIHPSLI
Sbjct: 681  PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 739

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 740  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 799

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 800  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 859

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD++QGQA+
Sbjct: 860  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 919

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 920  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 979

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 980  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1039

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1040 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1099

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1100 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1159

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1160 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1206


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
            gi|125545063|gb|EAY91202.1| hypothetical protein
            OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 2137 bits (5537), Expect = 0.0
 Identities = 1052/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ++F ET++KISFGQIYLSKPMMTE+DGETATLFP
Sbjct: 86   NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 145

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            K+ARLRNLTYSAPLYVDV+ +VMKKGHD EEVTE  E  PKVFIGKVPIMLRSSYCTL+Q
Sbjct: 146  KSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQ 204

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
             SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 205  QSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 264

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AENQNRP S MFVRMLSRA +KGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILE
Sbjct: 265  AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 324

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 325  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 384

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 385  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 444

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 445  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 504

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 505  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 564

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 565  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 624

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKK+ IR LQQRE+
Sbjct: 625  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRET 684

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EG WHDLVAKGFIEY+D       MISMTINDL+ ARH PEEAYSETYTHCEIHPSLI
Sbjct: 685  PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 743

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 744  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 803

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 804  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 863

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD++QGQA+
Sbjct: 864  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 923

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 924  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 983

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 984  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1043

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1044 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1103

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1104 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1163

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1164 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1210


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 2136 bits (5535), Expect = 0.0
 Identities = 1051/1127 (93%), Positives = 1091/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDV+K+V+KKGHDGEEVTE  + + KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVTETQD-LTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT+MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 294  HICYDFSDTLMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI  LQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLV+KGFIEY+D       MISMTINDLV AR  PE+AY+ TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
            arietinum]
          Length = 1194

 Score = 2135 bits (5533), Expect = 0.0
 Identities = 1048/1127 (92%), Positives = 1093/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGET+TLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETSTLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDV+K+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTL+Q
Sbjct: 115  KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLFQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAK+ILQ+E
Sbjct: 294  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQRE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI  LQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EGGWHDLV+KGFIEY+D       MISMTINDLV AR  PEEAYS+TYTHCEIHPSLI
Sbjct: 654  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q+E+QGQA+
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAA 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RY++RDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2135 bits (5532), Expect = 0.0
 Identities = 1051/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKI+FGQIYLSKPMMTESDGETATLFP
Sbjct: 52   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFP 111

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 112  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 170

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM
Sbjct: 171  NSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSM 230

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            A+ QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 231  ADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 290

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDF+DT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 291  HICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 350

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+P++LV+TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL+IKKKDI+ LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             DEGGWHDLVAKG+IEY+D       MISMTINDLV AR  P +AYS+TYTHCEIHPSLI
Sbjct: 651  PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQAS
Sbjct: 831  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTR+DHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 2135 bits (5531), Expect = 0.0
 Identities = 1051/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKI+FGQIYLSKPMMTESDGETATLFP
Sbjct: 52   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFP 111

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDVTK+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 112  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 170

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM
Sbjct: 171  NSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSM 230

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 231  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 290

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDF+DT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 291  HICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 350

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+P++LV+TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL+IKKKDI+ LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             DEGGWHDLVAKG+IEY+D       MISMTINDLV AR  P +AYS+TYTHCEIHPSLI
Sbjct: 651  PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQAS
Sbjct: 831  LVKEDFGRPDRATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTR+DHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177


>ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
            gi|561021391|gb|ESW20162.1| hypothetical protein
            PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 2134 bits (5530), Expect = 0.0
 Identities = 1051/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIY+ISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYRISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDV+K+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 294  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLT++STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG W+GIHR+P++LV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGSWMGIHRDPDMLVRTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKK+DI  LQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EGGWHDLV+KGFIEY+D       MISMTINDLV AR  PE+AYS+TYTHCEIHPSLI
Sbjct: 654  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEDAYSDTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQA 
Sbjct: 834  LVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score = 2133 bits (5528), Expect = 0.0
 Identities = 1051/1127 (93%), Positives = 1091/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ++F ET++KISFGQIYLSKPMMTE+DGETATLFP
Sbjct: 92   NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 151

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            K+ARLRNLTYSAPLYVDV+ +V+KKGHD EEVTE  E  PKVFIGKVPIMLRSSYCTL+Q
Sbjct: 152  KSARLRNLTYSAPLYVDVSYRVVKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQ 210

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
             SEKDLTELGECPYDQGGYF+INGSEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEVRSM
Sbjct: 211  QSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSM 270

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AENQNRP S MFVRMLSRA +KGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILE
Sbjct: 271  AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 330

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 331  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 390

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 391  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 450

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 451  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 510

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 511  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 570

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 571  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 630

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIV+ QRLLIKKK IR LQQRE+
Sbjct: 631  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRET 690

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             DEG WHDLVAKGFIEY+D       MISMTINDLVSAR+ P+EAYSETYTHCEIHPSLI
Sbjct: 691  PDEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLI 749

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 750  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 809

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 810  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 869

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD++QGQA+
Sbjct: 870  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 929

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RY++RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 930  RYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 989

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 990  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1049

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1050 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1109

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1110 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1169

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1170 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1216


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 2133 bits (5528), Expect = 0.0
 Identities = 1050/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 55   NTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFP 114

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDV+K+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 115  KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTEAQD-FTKVFIGKVPIMLRSSYCTLYQ 173

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 234  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFS T MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKE
Sbjct: 294  HICYDFSYTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 353

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+ Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            ++LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI  LQQRES
Sbjct: 594  KKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             ++GGWHDLV+KGFIEY+D       MISMTINDLV AR  PE+AYS+TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLI 713

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180


>ref|XP_007138707.1| hypothetical protein PHAVU_009G230400g [Phaseolus vulgaris]
            gi|561011794|gb|ESW10701.1| hypothetical protein
            PHAVU_009G230400g [Phaseolus vulgaris]
          Length = 1196

 Score = 2132 bits (5525), Expect = 0.0
 Identities = 1050/1127 (93%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPG QSD  ET+YKISFGQIYLSKPMMTESDGETA+LFP
Sbjct: 53   NTMQEIVDESADIEIRPESQHNPGHQSDSAETVYKISFGQIYLSKPMMTESDGETASLFP 112

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            KAARLRNLTYSAPLYVDV+K+V+KKGHDGEEVTE  +   KVFIGKVPIMLRSSYCTLYQ
Sbjct: 113  KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQ 171

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
            NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 172  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 231

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AE+QNRPPS MFVRMLSR SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
Sbjct: 232  AESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 291

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MM+LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKE
Sbjct: 292  HICYDFSDTQMMDLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKE 351

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV+AY QKCVDNGKDVNLQFAIKAKT+TSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 591

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV++QRLLIKKKDI  LQQRES
Sbjct: 592  RKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDRQRLLIKKKDIHALQQRES 651

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             +EGGWHDLV+KGFIEY+D       MISMTINDLV AR  PEEAYS+TYTHCEIHPSLI
Sbjct: 652  PEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLI 711

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQA 
Sbjct: 832  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 891

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVD+ISKALHKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIA 1131

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQV IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRMLT 1178


>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X2 [Setaria italica]
          Length = 1190

 Score = 2132 bits (5523), Expect = 0.0
 Identities = 1048/1127 (92%), Positives = 1090/1127 (96%)
 Frame = +1

Query: 1    NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFP 180
            NTMQEIVDES DI IRPESQHNPGRQ++F ET++KISFGQIYLSKPMMTE+DGETATLFP
Sbjct: 54   NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 113

Query: 181  KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQ 360
            K+ARLRNLTYSAPLYVDV+ +VMKKGHD EEVTE  +  PKVFIGKVPIMLRSSYCTLYQ
Sbjct: 114  KSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETSD-YPKVFIGKVPIMLRSSYCTLYQ 172

Query: 361  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 540
             SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK++YVAEVRSM
Sbjct: 173  QSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFSYVAEVRSM 232

Query: 541  AENQNRPPSGMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 720
            AENQNRP S MFVRMLSRA +KGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILE
Sbjct: 233  AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 292

Query: 721  HICYDFSDTIMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKE 900
            HICYDFSDT MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKE
Sbjct: 293  HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE 352

Query: 901  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1080
            MLPHVG+GE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 353  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 412

Query: 1081 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 1260
            LFRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 413  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 472

Query: 1261 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 1440
            QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 473  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 532

Query: 1441 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 1620
            LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 533  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 592

Query: 1621 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRES 1800
            R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKK  IR LQQRE+
Sbjct: 593  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKAHIRALQQRET 652

Query: 1801 QDEGGWHDLVAKGFIEYVDXXXXXXXMISMTINDLVSARHKPEEAYSETYTHCEIHPSLI 1980
             DEG WH+LV+KG+IEY+D       MISMTINDL++ARH PEEAYSETYTHCEIHPSLI
Sbjct: 653  PDEG-WHELVSKGYIEYIDTEEEETTMISMTINDLINARHNPEEAYSETYTHCEIHPSLI 711

Query: 1981 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 2160
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 771

Query: 2161 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGT 2340
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 2341 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 2520
            LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD++QGQAS
Sbjct: 832  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAS 891

Query: 2521 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 2700
            RY++RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 951

Query: 2701 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 2880
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 2881 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 3060
            TVDNISKALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 3061 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 3240
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1131

Query: 3241 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3381
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1178