BLASTX nr result
ID: Sinomenium21_contig00012306
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00012306
(1024 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 265 3e-68
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v... 261 4e-67
ref|XP_007020667.1| DNA topoisomerase I alpha isoform 4, partial... 241 3e-61
ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobro... 241 3e-61
ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobro... 241 3e-61
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 236 1e-59
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ... 233 1e-58
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr... 233 1e-58
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr... 233 1e-58
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 230 6e-58
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 229 1e-57
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 229 1e-57
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] 229 1e-57
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr... 228 4e-57
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 226 9e-57
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 226 2e-56
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 225 3e-56
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 224 4e-56
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea] 224 6e-56
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana] 223 1e-55
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 265 bits (676), Expect = 3e-68
Identities = 153/281 (54%), Positives = 172/281 (61%), Gaps = 2/281 (0%)
Frame = -1
Query: 838 KPLSIRLXXXXXXXXXSPALKGLKXXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVK 659
KPLS RL + A KGL K I + S+D +DEIPLSSKFR+K
Sbjct: 144 KPLSARLFTGLTKGSSNNANKGLINSSPASLPVP--KPEINRYSDDSDDEIPLSSKFRLK 201
Query: 658 SSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVKPKVLNKRPLSDVNSSDQSSVKKPK 479
++ + KS++SD+ K L S F QNGS KV NKRPL +V SS QSSVKKPK
Sbjct: 202 ANAGTSTVKSYESDDNKTLVSNFQQNGSINRGSKSSIKV-NKRPLGEVKSSVQSSVKKPK 260
Query: 478 LSYGPVAAKVKQASVKGEPKTDD--DDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXX 305
LS KQAS K EPK DD DDHVPI QRMKK A S NKS +
Sbjct: 261 LSDASTPVNNKQASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKVTKVVSSSM 320
Query: 304 XXXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPV 125
S+KVPP SGEG+KW+TLVHNGVIFPP YKPHGVKMLY G+PV
Sbjct: 321 KKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPHGVKMLYKGKPV 380
Query: 124 DLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
DLTPEQEEVATMFAVM DTDY TK KF ENFM+DWR+ILGK
Sbjct: 381 DLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGK 421
>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 261 bits (666), Expect = 4e-67
Identities = 149/268 (55%), Positives = 170/268 (63%), Gaps = 9/268 (3%)
Frame = -1
Query: 778 KGLKXXXXXXXXSERTKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLS 599
KGL S++ KV+ K S+D EDEIPLSSKFR+K+ + + K + DE+KPL+
Sbjct: 144 KGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLKTGMGASLDKLDNFDEKKPLT 203
Query: 598 SRFLQNG-SSKNNEMVK-PKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGE 425
S NG S K++E VK PK NKRPL N+S SS KKPKL G V KVKQ SVK E
Sbjct: 204 STLKPNGISKKDDERVKSPKGQNKRPLGQANTSHHSSSKKPKLLDGSVKGKVKQVSVKAE 263
Query: 424 PKTDDDD-------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXX 266
K DDDD + P +R+KK +SDNK S
Sbjct: 264 QKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSS 323
Query: 265 XXXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMF 86
TKVPP SGEGQKW+TL HNGVIFPP YKPHGVKMLYNG+PVDLTPEQEEVATMF
Sbjct: 324 KYSKS-TKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMF 382
Query: 85 AVMKDTDYATKPKFIENFMNDWRQILGK 2
AVMKDTDYATKP+FIENFMNDWR LGK
Sbjct: 383 AVMKDTDYATKPRFIENFMNDWRVRLGK 410
>ref|XP_007020667.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
gi|508720295|gb|EOY12192.1| DNA topoisomerase I alpha
isoform 4, partial [Theobroma cacao]
Length = 733
Score = 241 bits (615), Expect = 3e-61
Identities = 129/245 (52%), Positives = 155/245 (63%), Gaps = 2/245 (0%)
Frame = -1
Query: 730 KVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVK 551
K +K S+ED +DE PLS++F VKS+ + + D DE+KPL+S+ QNGS +
Sbjct: 60 KTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 119
Query: 550 PKVLN-KRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKK 374
L+ KRPL NSSD SS KKPK S P K KQ +VK E +DDDH+PI QRMKK
Sbjct: 120 SSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDHMPIAQRMKK 179
Query: 373 PAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLV 197
AS++K SM STKVPP SG+GQK WSTLV
Sbjct: 180 STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 239
Query: 196 HNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWR 17
HNGVIFP Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDTDY +K +F +NF DW
Sbjct: 240 HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 299
Query: 16 QILGK 2
++LGK
Sbjct: 300 KLLGK 304
>ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|590606159|ref|XP_007020668.1| DNA topoisomerase I
alpha isoform 3 [Theobroma cacao]
gi|508720294|gb|EOY12191.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao] gi|508720296|gb|EOY12193.1|
DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
Length = 836
Score = 241 bits (615), Expect = 3e-61
Identities = 129/245 (52%), Positives = 155/245 (63%), Gaps = 2/245 (0%)
Frame = -1
Query: 730 KVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVK 551
K +K S+ED +DE PLS++F VKS+ + + D DE+KPL+S+ QNGS +
Sbjct: 187 KTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 246
Query: 550 PKVLN-KRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKK 374
L+ KRPL NSSD SS KKPK S P K KQ +VK E +DDDH+PI QRMKK
Sbjct: 247 SSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDHMPIAQRMKK 306
Query: 373 PAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLV 197
AS++K SM STKVPP SG+GQK WSTLV
Sbjct: 307 STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 366
Query: 196 HNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWR 17
HNGVIFP Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDTDY +K +F +NF DW
Sbjct: 367 HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 426
Query: 16 QILGK 2
++LGK
Sbjct: 427 KLLGK 431
>ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|590606147|ref|XP_007020665.1| DNA topoisomerase I
alpha isoform 1 [Theobroma cacao]
gi|508720292|gb|EOY12189.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao] gi|508720293|gb|EOY12190.1|
DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
Length = 904
Score = 241 bits (615), Expect = 3e-61
Identities = 129/245 (52%), Positives = 155/245 (63%), Gaps = 2/245 (0%)
Frame = -1
Query: 730 KVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVK 551
K +K S+ED +DE PLS++F VKS+ + + D DE+KPL+S+ QNGS +
Sbjct: 187 KTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 246
Query: 550 PKVLN-KRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKK 374
L+ KRPL NSSD SS KKPK S P K KQ +VK E +DDDH+PI QRMKK
Sbjct: 247 SSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDHMPIAQRMKK 306
Query: 373 PAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLV 197
AS++K SM STKVPP SG+GQK WSTLV
Sbjct: 307 STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 366
Query: 196 HNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWR 17
HNGVIFP Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDTDY +K +F +NF DW
Sbjct: 367 HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 426
Query: 16 QILGK 2
++LGK
Sbjct: 427 KLLGK 431
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 236 bits (601), Expect = 1e-59
Identities = 126/248 (50%), Positives = 155/248 (62%), Gaps = 4/248 (1%)
Frame = -1
Query: 733 TKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMV 554
+K K +ED +DE PLSS+F +KS K++DSD++KPL+ + NGS+ +
Sbjct: 189 SKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNGSAMRDGQP 248
Query: 553 KP--KVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKT--DDDDHVPIGQ 386
+ NKRP D+ SS+Q SVKKPKLS KQASVK EPK DDDDH+PI Q
Sbjct: 249 NKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDDDDHLPISQ 308
Query: 385 RMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQKWS 206
R+KK S++KS S+ +KVPP SGEG+KW+
Sbjct: 309 RIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKYSKS-SKVPPSSGEGKKWN 367
Query: 205 TLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMN 26
L HNGVIFPP YKPHG+KMLY G+PVDLTPEQEEVATMFAVM DTDY KP+F ENF
Sbjct: 368 KLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFG 427
Query: 25 DWRQILGK 2
DW++ILGK
Sbjct: 428 DWKKILGK 435
>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
topoisomerase 1-like isoform X2 [Citrus sinensis]
gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
topoisomerase 1-like isoform X3 [Citrus sinensis]
gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
topoisomerase 1-like isoform X4 [Citrus sinensis]
Length = 902
Score = 233 bits (594), Expect = 1e-58
Identities = 130/246 (52%), Positives = 156/246 (63%), Gaps = 2/246 (0%)
Frame = -1
Query: 733 TKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEM 557
++V++K ED +DE+PLSS+F ++G S K DSDE+KPL+S+ QNGS S+ +
Sbjct: 184 SEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQQNGSTSRETQQ 242
Query: 556 VKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMK 377
V KRPL +SS SS KKPK+S KVKQ +VK E K DDDDH+PI QRMK
Sbjct: 243 KSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK 302
Query: 376 KPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTL 200
A S KS + STK+ PGSG+GQK W+TL
Sbjct: 303 NSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTL 362
Query: 199 VHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDW 20
VHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY KPKF ENF NDW
Sbjct: 363 VHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDW 422
Query: 19 RQILGK 2
R++LGK
Sbjct: 423 RKLLGK 428
>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|557555706|gb|ESR65720.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 824
Score = 233 bits (594), Expect = 1e-58
Identities = 130/246 (52%), Positives = 156/246 (63%), Gaps = 2/246 (0%)
Frame = -1
Query: 733 TKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEM 557
++V++K ED +DE+PLSS+F ++G S K DSDE+KPL+S+ QNGS S+ +
Sbjct: 184 SEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQQNGSTSRETQQ 242
Query: 556 VKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMK 377
V KRPL +SS SS KKPK+S KVKQ +VK E K DDDDH+PI QRMK
Sbjct: 243 KSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK 302
Query: 376 KPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTL 200
A S KS + STK+ PGSG+GQK W+TL
Sbjct: 303 NSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTL 362
Query: 199 VHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDW 20
VHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY KPKF ENF NDW
Sbjct: 363 VHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDW 422
Query: 19 RQILGK 2
R++LGK
Sbjct: 423 RKLLGK 428
>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|567920950|ref|XP_006452481.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555705|gb|ESR65719.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555707|gb|ESR65721.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 902
Score = 233 bits (594), Expect = 1e-58
Identities = 130/246 (52%), Positives = 156/246 (63%), Gaps = 2/246 (0%)
Frame = -1
Query: 733 TKVSIKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEM 557
++V++K ED +DE+PLSS+F ++G S K DSDE+KPL+S+ QNGS S+ +
Sbjct: 184 SEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKP-IDSDEKKPLASKVQQNGSTSRETQQ 242
Query: 556 VKPKVLNKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMK 377
V KRPL +SS SS KKPK+S KVKQ +VK E K DDDDH+PI QRMK
Sbjct: 243 KSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMK 302
Query: 376 KPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTL 200
A S KS + STK+ PGSG+GQK W+TL
Sbjct: 303 NSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTL 362
Query: 199 VHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDW 20
VHNGVIFPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY KPKF ENF NDW
Sbjct: 363 VHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDW 422
Query: 19 RQILGK 2
R++LGK
Sbjct: 423 RKLLGK 428
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 230 bits (587), Expect = 6e-58
Identities = 135/265 (50%), Positives = 158/265 (59%), Gaps = 27/265 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S++ M K L
Sbjct: 187 EESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSASL 246
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKT------------------ 416
NKRP + S +QSSVKKPKLS + KQA+VK EPK
Sbjct: 247 SNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQS 306
Query: 415 -------DDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXX 257
DDDD+VPI QR+KK AS +KS +
Sbjct: 307 ATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTVVSSSLKKVNKNSKKVIKKTAY 366
Query: 256 XXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVM 77
S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY QP+ LTPEQEEVATMFAVM
Sbjct: 367 TKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVM 426
Query: 76 KDTDYATKPKFIENFMNDWRQILGK 2
DTDY KP F ENF +DW++ILGK
Sbjct: 427 LDTDYMNKPCFKENFFSDWKKILGK 451
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 229 bits (584), Expect = 1e-57
Identities = 132/265 (49%), Positives = 161/265 (60%), Gaps = 27/265 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ NGS S+++ M K L
Sbjct: 188 EESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASL 247
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD-------------- 404
NKRP +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 248 SNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQT 307
Query: 403 -----------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXX 257
+VPI QR+KK AS +KS + +
Sbjct: 308 ATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAY 367
Query: 256 XXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVM 77
S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY QP+ LTPEQEEVATMFAVM
Sbjct: 368 TKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVM 427
Query: 76 KDTDYATKPKFIENFMNDWRQILGK 2
DTDY KP+F ENF +DW+++LGK
Sbjct: 428 LDTDYMNKPRFKENFFSDWKKMLGK 452
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 229 bits (584), Expect = 1e-57
Identities = 132/265 (49%), Positives = 161/265 (60%), Gaps = 27/265 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ NGS S+++ M K L
Sbjct: 188 EESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASL 247
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD-------------- 404
NKRP +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 248 SNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQT 307
Query: 403 -----------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXX 257
+VPI QR+KK AS +KS + +
Sbjct: 308 ATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAY 367
Query: 256 XXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVM 77
S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY QP+ LTPEQEEVATMFAVM
Sbjct: 368 TKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVM 427
Query: 76 KDTDYATKPKFIENFMNDWRQILGK 2
DTDY KP+F ENF +DW+++LGK
Sbjct: 428 LDTDYMNKPRFKENFFSDWKKMLGK 452
>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 229 bits (584), Expect = 1e-57
Identities = 133/267 (49%), Positives = 160/267 (59%), Gaps = 29/267 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S++ M K L
Sbjct: 187 EESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSVSRDGPMNKSASL 246
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEP-------------------- 422
NKRP +V S +QSSVKKPKLS + KQA+VK EP
Sbjct: 247 SNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNIPLSQRGKKS 306
Query: 421 -------KTDDDDHVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXX 263
K +DDD+VPI QR+KK AS +KS + +
Sbjct: 307 QAATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKNSKKVIKKT 366
Query: 262 XXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFA 83
S+KVPPGSGEGQKW+TLVHNGVIFPP Y PHGVKMLY QP+ LTPEQEEVATMFA
Sbjct: 367 AYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEEVATMFA 426
Query: 82 VMKDTDYATKPKFIENFMNDWRQILGK 2
VM DTDY KP+F ENF +DW+++LGK
Sbjct: 427 VMLDTDYMNKPRFKENFFSDWKKMLGK 453
>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 877
Score = 228 bits (580), Expect = 4e-57
Identities = 122/234 (52%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Frame = -1
Query: 697 EDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGSSKNNEMVKPKVL-NKRPLS 521
+DE+PLSS+F +KS+ + KS S E +P S+ NGS+KN++ K V+ KRP+
Sbjct: 171 DDEVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRPMD 230
Query: 520 DVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKKPAASDNKSQSM 341
+ S+ SS KKPKL KVKQ +VK E K DDDDH+ I QRMKK +S NKS
Sbjct: 231 NKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKSSFA 290
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLVHNGVIFPPSYK 164
STKV PGS +GQK W+TLVHNGVIFPP YK
Sbjct: 291 KKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYK 350
Query: 163 PHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
PHGVK+LY G+P+DLTPEQEEVATMFAVMKDTDY KP+F +NF NDWR++LGK
Sbjct: 351 PHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGK 404
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 226 bits (577), Expect = 9e-57
Identities = 121/240 (50%), Positives = 152/240 (63%), Gaps = 2/240 (0%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
K + +D++PL S+F +KS+ + K + E+KPL S+ QNGS SK+ + P +
Sbjct: 180 KDEDSDDDKVPLCSRFPMKSTAGTSGNKPNNISEKKPLPSKVQQNGSTSKDKQQKAPLIP 239
Query: 538 NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDDHVPIGQRMKKPAASD 359
KRPL NSS+QSS+KKPKLS G KVKQA+VK E DD D +PI QR K +S+
Sbjct: 240 TKRPLDKANSSEQSSIKKPKLSAGSTITKVKQATVKAEE--DDPDDIPIAQRKKSLGSSE 297
Query: 358 NKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKVPPGSGEGQK-WSTLVHNGVI 182
+K S STKV P S +GQK W+TL+HNGVI
Sbjct: 298 SKLSSAKQKAIKVVSSSFKKPIKKNKKQMKNTKYSKSTKVQPSSTDGQKKWTTLIHNGVI 357
Query: 181 FPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYATKPKFIENFMNDWRQILGK 2
FPP YKPHG+K+LY G+PVDL PEQEEVATMFAVMKDTDY KPKF+ENF NDWR++LG+
Sbjct: 358 FPPPYKPHGIKILYKGRPVDLAPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKLLGR 417
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 226 bits (575), Expect = 2e-56
Identities = 131/267 (49%), Positives = 160/267 (59%), Gaps = 27/267 (10%)
Frame = -1
Query: 721 IKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPK 545
+ + SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S++ M K
Sbjct: 186 VVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSA 245
Query: 544 VL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD------------ 404
L NKR +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 246 SLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKS 305
Query: 403 -------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXX 263
+ PI QR+KK AS +KS + +
Sbjct: 306 QTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKT 365
Query: 262 XXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFA 83
S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY QP+ LTPEQEEVATMFA
Sbjct: 366 AYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFA 425
Query: 82 VMKDTDYATKPKFIENFMNDWRQILGK 2
VM DTDY KP+F ENF +DW+++LGK
Sbjct: 426 VMLDTDYMNKPRFKENFFSDWKKMLGK 452
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 225 bits (573), Expect = 3e-56
Identities = 131/265 (49%), Positives = 156/265 (58%), Gaps = 27/265 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S M K L
Sbjct: 188 EESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASPEGPMNKSASL 247
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD-------------- 404
NKR +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 248 SNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQT 307
Query: 403 -----------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXX 257
H PI QR+KK S +KS + +
Sbjct: 308 AASKPKDEDDDHAPISQRIKKSPVSVSKSSAPVKKASTVVSTSLKKVNKKSKKVIRKTAY 367
Query: 256 XXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVM 77
S+KVPPGSGEGQKW+TLVHNGV+FPP YKPHGVKMLY QP+ LTPEQEEVATMFAVM
Sbjct: 368 TKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVM 427
Query: 76 KDTDYATKPKFIENFMNDWRQILGK 2
DTDY KP+F ENF +DW++ILGK
Sbjct: 428 LDTDYMNKPRFKENFFSDWKKILGK 452
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 224 bits (571), Expect = 4e-56
Identities = 130/267 (48%), Positives = 159/267 (59%), Gaps = 27/267 (10%)
Frame = -1
Query: 721 IKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPK 545
+ + SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S++ M K
Sbjct: 186 VVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSA 245
Query: 544 VL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD------------ 404
L NKR +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 246 SLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKS 305
Query: 403 -------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXX 263
+ PI QR+KK AS +KS + +
Sbjct: 306 QTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKT 365
Query: 262 XXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFA 83
S+KVPPGSGEGQKW+TLVHNGV+FPP YKPHGVKMLY QP+ LTPEQEEVATMFA
Sbjct: 366 AYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFA 425
Query: 82 VMKDTDYATKPKFIENFMNDWRQILGK 2
M DTDY KP+F ENF +DW++ILGK
Sbjct: 426 AMLDTDYMNKPRFKENFFSDWKKILGK 452
>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 224 bits (570), Expect = 6e-56
Identities = 130/265 (49%), Positives = 158/265 (59%), Gaps = 27/265 (10%)
Frame = -1
Query: 715 KSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPKVL 539
+ SED EDE PLS +F KSS KS+DSDE+KPL+++ NGS S++ M K L
Sbjct: 188 EESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDGPMNKSASL 247
Query: 538 -NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD-------------- 404
NKR +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 248 SNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQT 307
Query: 403 -----------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXXXX 257
+ PI QR+KK AS +KS + +
Sbjct: 308 AASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAY 367
Query: 256 XXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFAVM 77
S+KVPPGSGEGQKW+TLVHNGVIFPP YKPHGVKMLY QP+ LTPEQEEVATMFAVM
Sbjct: 368 TKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVM 427
Query: 76 KDTDYATKPKFIENFMNDWRQILGK 2
DTDY KP+F ENF +DW+++LGK
Sbjct: 428 LDTDYMNKPRFKENFFSDWKKMLGK 452
>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 223 bits (567), Expect = 1e-55
Identities = 130/267 (48%), Positives = 160/267 (59%), Gaps = 27/267 (10%)
Frame = -1
Query: 721 IKKSSEDLEDEIPLSSKFRVKSSGASMVKKSFDSDEEKPLSSRFLQNGS-SKNNEMVKPK 545
+ + SED EDE PLS +F KSS KS+DSDE+KPL+++ QNGS S++ M K
Sbjct: 186 VVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSA 245
Query: 544 VL-NKRPLSDVNSSDQSSVKKPKLSYGPVAAKVKQASVKGEPKTDDDD------------ 404
L NKR +V S +QSS+KKPKLS + KQA+VK EPK +DDD
Sbjct: 246 SLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKS 305
Query: 403 -------------HVPIGQRMKKPAASDNKSQSMMXXXXXXXXXXXXXXXXXXXXXXXXX 263
+ PI QR+KK AS +KS + +
Sbjct: 306 QTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKT 365
Query: 262 XXXXSTKVPPGSGEGQKWSTLVHNGVIFPPSYKPHGVKMLYNGQPVDLTPEQEEVATMFA 83
S+KVPPGSGEGQKW+TLVHNGV+F P YKPHGVKMLY QP+ LTPEQEEVATMFA
Sbjct: 366 AYTKSSKVPPGSGEGQKWTTLVHNGVMFLPPYKPHGVKMLYKQQPLTLTPEQEEVATMFA 425
Query: 82 VMKDTDYATKPKFIENFMNDWRQILGK 2
VM DTDY TKP+F ENF +DW+++LGK
Sbjct: 426 VMLDTDYMTKPRFKENFFSDWKKMLGK 452