BLASTX nr result
ID: Sinomenium21_contig00012043
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00012043
(1477 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit... 105 7e-20
gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 100 3e-18
ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 ... 87 2e-14
ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 ... 87 2e-14
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 87 2e-14
emb|CBI18915.3| unnamed protein product [Vitis vinifera] 86 3e-14
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 86 3e-14
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 85 9e-14
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 84 1e-13
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 84 2e-13
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 84 2e-13
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 84 2e-13
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 82 5e-13
emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max] 82 5e-13
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru... 82 8e-13
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 80 2e-12
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 80 2e-12
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 79 4e-12
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 79 7e-12
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 79 7e-12
>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
Length = 1846
Score = 105 bits (261), Expect = 7e-20
Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 14/193 (7%)
Frame = +2
Query: 179 LQSYIPQLQSYLTNLQSNIPQLQSYVA*LQPYLPSL*PHFSCIQPLFTFLQPNITIL*PD 358
+Q Y+ LQ +T LQ +I +LQ YV LQP + L P+F+ + P T LQP T L PD
Sbjct: 1642 IQPYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPD 1701
Query: 359 LTFLQP-------DLAFLQPNLTFLQSNLAFIQPHFSCL*SNFSWIQPNFSKL*SNVTKL 517
+T LQP D+ LQP T L ++ +QP+F+ L + + +QP F++L +VT+L
Sbjct: 1702 VTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTEL 1761
Query: 518 QPY-------IPKLQSSFS*VQPFPGIFTKQSKNITIKSVQSIISYVQPNITIIFTYISI 676
QPY + +LQ + VQ F +F+KQ K+ + +QS S +QP + + +++I
Sbjct: 1762 QPYLTELLPEVTELQPYVTFVQSFTCLFSKQPKD--DEPIQSSSSKLQPCLADLLAHLTI 1819
Query: 677 LFSTKSHIQSEQP 715
+ +TK +Q ++P
Sbjct: 1820 ICTTKPIVQPDKP 1832
Score = 77.4 bits (189), Expect = 2e-11
Identities = 57/174 (32%), Positives = 91/174 (52%)
Frame = +2
Query: 17 PYFSWL*SNLAWI*SYISWIQPHFPNI*S*LSWLQSN*PRIFSN*SLLFSHFAQLQSYIP 196
PY +WL ++ + I+ +QP+ + ++ LQ + + + L +F +L +
Sbjct: 1644 PYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVT 1703
Query: 197 QLQSYLTNLQSNIPQLQSYVA*LQPYLPSL*PHFSCIQPLFTFLQPNITIL*PDLTFLQP 376
+LQ Y T L ++ +LQ Y L P + L P+F+ + P T LQP T L PD+T LQP
Sbjct: 1704 ELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQP 1763
Query: 377 DLAFLQPNLTFLQSNLAFIQPHFSCL*SNFSWIQPNFSKL*SNVTKLQPYIPKL 538
L L P +T LQ + F+Q F+CL FS + + S+ +KLQP + L
Sbjct: 1764 YLTELLPEVTELQPYVTFVQ-SFTCL---FSKQPKDDEPIQSSSSKLQPCLADL 1813
Score = 58.5 bits (140), Expect = 7e-06
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Frame = +2
Query: 344 IL*PDLTFLQPDLAFLQPNL-------TFLQSNLAFIQPHFSCL*SNFSWIQPNFSKL*S 502
I+ P + +LQPD+ LQP++ T LQ ++ +QP+F+ L + + +QP F++L
Sbjct: 1641 IIQPYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLP 1700
Query: 503 NVTKLQPYIPKLQSSFS*VQPFPGIFTKQSKNITIKSVQSIISYVQPNITIIFTYISILF 682
+VT+LQPY +L + +QP+ FTK ++T +Q + + P++T + Y + L
Sbjct: 1701 DVTELQPYFTELLPDVTELQPY---FTKLLPDVT--ELQPYFTELLPDVTELQPYFTELL 1755
Query: 683 STKSHIQ 703
+ +Q
Sbjct: 1756 PDVTELQ 1762
>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 1784
Score = 99.8 bits (247), Expect = 3e-18
Identities = 65/186 (34%), Positives = 106/186 (56%), Gaps = 7/186 (3%)
Frame = +2
Query: 179 LQSYIPQLQSYLTNLQSNIPQLQSY-------VA*LQPYLPSL*PHFSCIQPLFTFLQPN 337
+Q Y+ LQ +T LQ +I +LQ Y V LQPY L P + +QP FT L P+
Sbjct: 1587 IQPYVAWLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPD 1646
Query: 338 ITIL*PDLTFLQPDLAFLQPNLTFLQSNLAFIQPHFSCL*SNFSWIQPNFSKL*SNVTKL 517
+T L P T L PD+ LQP T L ++ +QP+F+ L + + + P+ ++L +T+L
Sbjct: 1647 VTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLLPDVTELQPYLTEL 1706
Query: 518 QPYIPKLQSSFS*VQPFPGIFTKQSKNITIKSVQSIISYVQPNITIIFTYISILFSTKSH 697
P + +LQ + VQ F +F+KQ K+ + VQS S +QP + + +++I+ +TK
Sbjct: 1707 LPEVTELQPYVTLVQSFTCLFSKQPKD--DEPVQSSSSKLQPCLADLLAHLTIICTTKPI 1764
Query: 698 IQSEQP 715
+Q ++P
Sbjct: 1765 VQPDKP 1770
>ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
cacao] gi|508698849|gb|EOX90745.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 5 [Theobroma cacao]
Length = 1512
Score = 87.0 bits (214), Expect = 2e-14
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ S KD+ +T KDD S++
Sbjct: 1454 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTSNKDDRAT--KDDRSSK 1506
>ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
cacao] gi|508698848|gb|EOX90744.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 4 [Theobroma cacao]
Length = 1511
Score = 87.0 bits (214), Expect = 2e-14
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ S KD+ +T KDD S++
Sbjct: 1453 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTSNKDDRAT--KDDRSSK 1505
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 87.0 bits (214), Expect = 2e-14
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ S KD+ +T KDD S++
Sbjct: 1803 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTSNKDDRAT--KDDRSSK 1855
>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 86.3 bits (212), Expect = 3e-14
Identities = 39/45 (86%), Positives = 41/45 (91%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGS 860
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ+S KD GS
Sbjct: 1519 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1563
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 86.3 bits (212), Expect = 3e-14
Identities = 39/45 (86%), Positives = 41/45 (91%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGS 860
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ+S KD GS
Sbjct: 1802 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1846
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 84.7 bits (208), Expect = 9e-14
Identities = 43/55 (78%), Positives = 44/55 (80%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ S K G KKD STR
Sbjct: 1785 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTSTK--GDRDKKDSKSTR 1837
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 84.3 bits (207), Expect = 1e-13
Identities = 42/55 (76%), Positives = 44/55 (80%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+ PGYSPSSTSQYTPQ S+KD KDD STR
Sbjct: 1795 GVSPDYSPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKD-----TKDDRSTR 1844
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 84.0 bits (206), Expect = 2e-13
Identities = 42/55 (76%), Positives = 44/55 (80%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYSPSS QYSPS GYSP+ PGYSPSSTSQYTPQ S+KD KDD STR
Sbjct: 1793 GVSPDYSPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKD-----VKDDRSTR 1842
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 84.0 bits (206), Expect = 2e-13
Identities = 41/51 (80%), Positives = 43/51 (84%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDD 878
G SPDYSPSS QYSPS GYSPTAPGYSPSSTSQYTPQ S KD+ S +KDD
Sbjct: 1802 GPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRS--RKDD 1850
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 84.0 bits (206), Expect = 2e-13
Identities = 41/51 (80%), Positives = 43/51 (84%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDD 878
G SPDYSPSS QYSPS GYSPTAPGYSPSSTSQYTPQ S KD+ S +KDD
Sbjct: 1781 GPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRS--RKDD 1829
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 82.4 bits (202), Expect = 5e-13
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST 863
GVSPDYSPSS Q+SPS GYSP+ PGYSPSSTSQYTPQ S KD+G T
Sbjct: 1781 GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDGGT 1826
>emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 82.4 bits (202), Expect = 5e-13
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST 863
GVSPDYSPSS Q+SPS GYSP+ PGYSPSSTSQYTPQ S KD+G T
Sbjct: 448 GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDGGT 493
>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
Length = 1866
Score = 81.6 bits (200), Expect = 8e-13
Identities = 41/55 (74%), Positives = 43/55 (78%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
GVSPDYS SS QYSPS GYSP+ PGYSPSSTSQYTPQ S KD+ KDD STR
Sbjct: 1817 GVSPDYSSSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSDKDD-----KDDRSTR 1866
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 80.5 bits (197), Expect = 2e-12
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDD 878
G SPDYSPSS QYSPS GYSP+APGYSPSSTSQYTP++S++D S KDD
Sbjct: 1788 GTSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNKSV--KDD 1836
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 80.5 bits (197), Expect = 2e-12
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDD 878
G SPDYSPSS QYSPS GYSP+APGYSPSSTSQYTP++S++D S KDD
Sbjct: 1795 GTSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNRSV--KDD 1843
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 79.3 bits (194), Expect = 4e-12
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST 863
GVSPDYSPSS Q+SPS GYSP+ PGYSPSSTSQYTPQ S KD+ T
Sbjct: 1781 GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGT 1826
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 78.6 bits (192), Expect = 7e-12
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
G +PDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ ++ D + KDD +T+
Sbjct: 1906 GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSAT---KDDKNTK 1957
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 78.6 bits (192), Expect = 7e-12
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +3
Query: 726 GVSPDYSPSSAQYSPSVGYSPTAPGYSPSSTSQYTPQLSKKDEGST*KKDDGSTR 890
G +PDYSPSS QYSPS GYSP+APGYSPSSTSQYTPQ ++ D + KDD +T+
Sbjct: 1796 GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSAT---KDDKNTK 1847