BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00010956
         (3309 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1365   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1358   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1330   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1329   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1320   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1318   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1316   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1311   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...  1260   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1257   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1253   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1242   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1241   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1235   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1234   0.0  
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...  1229   0.0  
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...  1223   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...  1222   0.0  
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...  1221   0.0  
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...  1220   0.0  

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1365 bits (3533), Expect = 0.0
 Identities = 685/1017 (67%), Positives = 787/1017 (77%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            K +   V FG GLRK  F L H   EYKLE+SY++IW IQL+ PR    KFLLIQ+L AP
Sbjct: 118  KAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAP 177

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +IYEK               YFK+  +DQWVR  DFT S  IGQS A+CLELPY  + P 
Sbjct: 178  QIYEKDVPVLSY--------YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP- 228

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
              RENF YYKE++G+F +ESGSS+SHNL LVPI+GPP+G  LP+++LFKIN LVQNGCL+
Sbjct: 229  NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288

Query: 2767 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2588
            GPTLD  FF  V+P+  P ++IEHALE+LYHL ECCYEPV+WL EQY  Y +      +P
Sbjct: 289  GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKP-VAGSP 347

Query: 2587 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2408
             ISL  GLVY+RRVQITP KVYFC PEV VSNRVLRNY   +DNF+RVSF+DE  EK+ S
Sbjct: 348  AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHS 407

Query: 2407 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2228
            T +SPR SK  + + T +YRRILS L+NGIVIGDKKFD LAFSSSQLR++SAWMFAS+ G
Sbjct: 408  TVISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465

Query: 2227 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 2048
            LTAA IR WMGDF +IRNVAKYAARLGQSFSSSKETL V              +    Y+
Sbjct: 466  LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525

Query: 2047 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1868
            FSDGIGKIS   A +VA KCG     PSAFQIRYGGYKGVVAVDPTS  KLSLRKSMFKY
Sbjct: 526  FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585

Query: 1867 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1688
             SDNT LDVL WSK QP FLNRQLITLLSTLGV+DH+FEKKQ+  VDQLD IL DPV AQ
Sbjct: 586  ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645

Query: 1687 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1508
            EAL++MSPGEN NVLKEML+CGYKPDAEPFLSMMLQTFRA+KL ELR ++RI++PNGRSM
Sbjct: 646  EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705

Query: 1507 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1328
            MGCLDETRTLEYG+VFVQ SG G +Q   + L+ +RG  S+  N+I+EGK++VAKNPCLH
Sbjct: 706  MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLM-FRGSGSHHDNFILEGKIVVAKNPCLH 764

Query: 1327 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 1148
            PGD+RVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +LIPP+QI
Sbjct: 765  PGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQI 824

Query: 1147 QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 968
             PMDYTPA + V LDHDV IE+++EYFTNY++NDSLG+IANAHT FADKE   A    C 
Sbjct: 825  NPMDYTPAPTKV-LDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883

Query: 967  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 788
            ELA+LFS+AVDFPKTGVPA IP +L VKEYPDFMEK DKP+Y SQ VIGKLFREVK+I P
Sbjct: 884  ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943

Query: 787  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 608
                I SFT  VA++SYD DME  GFEDY+ DA+Y K +YD+KLGNLM+YYGIKTE+E  
Sbjct: 944  HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003

Query: 607  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 428
                     SFDR+KDAEA+GLAVKSL+KEAR WF+  GS++   A + YAKASAWYHVT
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063

Query: 427  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 257
            YHP+YWG YNEGM RDHFLSFPWCVYDKLIH K+     R L    L  +   GLRL
Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1358 bits (3515), Expect = 0.0
 Identities = 670/1019 (65%), Positives = 798/1019 (78%), Gaps = 2/1019 (0%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            +GV   VNFGFG+RK+ FLL H G EY+LE+ Y++IW I+L  PR    K+LLIQ+L AP
Sbjct: 120  RGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAP 179

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +I++K              ++FK+  +DQWVR TDFT S  IGQS+ +C+ELPY  E P 
Sbjct: 180  RIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP- 238

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
              +ENF YYKE E +F +E+GS++S +LDLVPIVGPP GI LPYE+LFKINLLVQNGC+A
Sbjct: 239  DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298

Query: 2767 GPTLDAPFFASVNPQFIPSAY--IEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPN 2594
            GP LD+ F+  V+P   P +   IEHAL++LYHL ECCYEP +WL +QY KY  S   P+
Sbjct: 299  GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358

Query: 2593 APGISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKL 2414
            +P ISL DGLVY+ RVQ+TPS+VYFC PE+ VSNRVLR++   +DNF+R+SF+DE+ +K+
Sbjct: 359  SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418

Query: 2413 RSTDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASK 2234
             STDLSPR S   D   T IY RILSTLRNGI+IGD+KF+ LAFSSSQLRESSAWMFAS+
Sbjct: 419  HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 478

Query: 2233 DGLTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVK 2054
             GLTAA IREWMG+FREIRNVAKYAARLGQSFSSSKETL+V                  K
Sbjct: 479  YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 538

Query: 2053 YIFSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMF 1874
            Y+FSDGIGK+S  FA+KVA KCG+    PSAFQIRYGGYKGVVA DPTS  KLSLR SM 
Sbjct: 539  YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 598

Query: 1873 KYTSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVR 1694
            KY S+ T LDVL WSK QPCFLNRQLI+LLSTLG+ D IFEKKQ+E V QLD ILTDP++
Sbjct: 599  KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 658

Query: 1693 AQEALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGR 1514
            AQEAL++MSPGEN N+LKE+L+CGYKPDAEPFLSMMLQTFRASKL ELR ++RI+IPNGR
Sbjct: 659  AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 718

Query: 1513 SMMGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPC 1334
            SMMGCLDETRTL YGQVFVQ SG G +Q+     + +   RS QR +IV+G V+VAKNPC
Sbjct: 719  SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL-FSSSRSRQR-FIVQGLVVVAKNPC 776

Query: 1333 LHPGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPR 1154
            LHPGD+RVL+AVNVP LHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD+ELIPP+
Sbjct: 777  LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 836

Query: 1153 QIQPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGA 974
            Q  PMDYTPA S ++LDHDV IED++EYFTNY++NDSLG+IANAHT FAD+E   A S  
Sbjct: 837  QDPPMDYTPAQS-MQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEP 895

Query: 973  CMELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEI 794
            C++LA  FS+AVDFPKTGVPA IPPHL+VKEYPDFMEK DKP+Y SQ VIGKLFR VK+I
Sbjct: 896  CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 955

Query: 793  TPQTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAE 614
             P T+CI  FT  VA++SYD DME DGFED++DDA Y KG YD+KLGNLM+YYGIKTEAE
Sbjct: 956  APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAE 1015

Query: 613  XXXXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYH 434
                       SF +++DAEA+G+AV++L+KEAR WF +K     +T  + YAKASAWYH
Sbjct: 1016 ILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK--SGSDTEDDAYAKASAWYH 1073

Query: 433  VTYHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 257
            VTYHP+YWG YN GM RDHFLSFPWCVYD+L+ IKK+ +       P L  QF+ GLR+
Sbjct: 1074 VTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA-FPALEQQFRQGLRM 1131


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1330 bits (3441), Expect = 0.0
 Identities = 669/1018 (65%), Positives = 782/1018 (76%), Gaps = 2/1018 (0%)
 Frame = -3

Query: 3304 GVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPK 3125
            G    VNFG G+RK+ F L H   EYKL + +++IW I+L RPR    K+LLIQ+  AP+
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 3124 IYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQ 2945
            IYE+              +YF+D  ++QWVR TDFT S  IG SS++CLELP   + P  
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP-N 237

Query: 2944 IRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAG 2765
              ENF YYKE+EG F +ESG +FS N DLVPIVGP  G+ LPY +LF++NLLVQNGCLAG
Sbjct: 238  FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 2764 PTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPG 2585
              LD  F+  V+P  +P   IE+ALE+LYHL ECCYEP KW +EQY KY  S + P +P 
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357

Query: 2584 ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRST 2405
            +SL  GLVY+ +VQITP KV+FC PEV VSNRVLR Y   +DNF+RVSFVDEE EK+ ST
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417

Query: 2404 DLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGL 2225
            D+SPRTS   + + TAIY RILSTL+NGIVIGDKKF+ LAFSSSQLRE+S WMFAS+ GL
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2224 TAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIF 2045
            TAA IR WMG F +IRNVA+YAARLGQSF SS ETL+V              R G +Y+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 2044 SDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYT 1865
            SDGIGKIS  FA+KVA KCG   F PSAFQIRY GYKGVVAVDPTS  KLSLR+SMFKY 
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1864 SDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQE 1685
            S+NT LDVL  SK QPCFLNRQLITLLSTLGV DH FE+KQ+E VDQLD +LTDP+RAQE
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1684 ALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMM 1505
            AL++MSPGEN N+LKEMLLCGY+PDAEPFLSMMLQTFRASKL ELR ++RI+IPNGRSMM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1504 GCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHP 1325
            GCLDETRTLE+GQVFV+FSG   + + D+       +R   + Y+++G V+VAKNPCLHP
Sbjct: 718  GCLDETRTLEHGQVFVKFSGSRFRNLYDSS--DMFSERGRGQCYLIKGSVVVAKNPCLHP 775

Query: 1324 GDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQ 1145
            GDLR+L+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI 
Sbjct: 776  GDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQIS 835

Query: 1144 PMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACME 965
            PMDYTP    ++LDHDVTIE+++EYFTNY++NDSLGVIANAHTA ADKES  A S  C+E
Sbjct: 836  PMDYTP-EPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 964  LARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQ 785
            LAR FS+AVDFPKTGVPA IP +L  +EYPDFMEK DKPSY S+ VIGKLFREVK+I P+
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 784  TNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXX 605
            T+ I SFT  VA++ YD DME DGFEDY+DDA+Y K  YD+KLGNLM YYGIKTEAE   
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 604  XXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTY 425
                    SF +K+DAEA+G+AV+SLKKEAR+WF++KGS     A +  AKASAWYHVTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074

Query: 424  HPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSK--RRQLDEPPLNYQFKHGLRL 257
            H NYWG YNEGM RDHFLSFPWCVYDKLI IK+ NS   RR L  P +  QF  GL L
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1329 bits (3439), Expect = 0.0
 Identities = 669/1015 (65%), Positives = 782/1015 (77%)
 Frame = -3

Query: 3301 VGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKI 3122
            V   VNFG G+RK++FLL H  VEY+L++ Y++IW I+L RPRN   K+LLIQ+  AP+I
Sbjct: 119  VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178

Query: 3121 YEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQI 2942
            YEK              +YF D  +DQWVR TDFT S CIGQSS +CLELPY  + P   
Sbjct: 179  YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP-NF 237

Query: 2941 RENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGP 2762
            RENF YYKE EG+F +ESGSS+S NL+LVPIVGP  GI+LPYE+LFKINLLVQNGC+ GP
Sbjct: 238  RENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGP 297

Query: 2761 TLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGI 2582
             LDA F+  VNP  I   YI+HALE+LY+L ECC+EP KWL EQY  Y  S   P +P I
Sbjct: 298  ALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357

Query: 2581 SLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTD 2402
            SL DGLV +RRVQITPS+VYFC PE+ VSNRVLR++H+ +DNF+R++FVDEE EK+ STD
Sbjct: 358  SLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTD 417

Query: 2401 LSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLT 2222
            L  R   TE      IY RILSTL+NGIVIGDK+F+ LAFSSSQLRE+SAWMFAS++GLT
Sbjct: 418  LLTRNRITE------IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLT 471

Query: 2221 AACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFS 2042
            AA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              R G+ Y+FS
Sbjct: 472  AADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFS 531

Query: 2041 DGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTS 1862
            DGIGKIS  FA+KVA KC ++   PSAFQIR GG+KGVVAVDPTS  KLSLR SM KY S
Sbjct: 532  DGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYES 591

Query: 1861 DNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEA 1682
            +NT LDVL WSK QPCFLNRQLITLLSTLGV DH FE+KQ+EVVDQL+ ILTDP++AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEA 651

Query: 1681 LDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMG 1502
            L++MSPGEN N+LKEMLLCGY+PDAEPFLSMMLQTFRASKL ELR +SRI++ NGRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMG 711

Query: 1501 CLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPG 1322
            CLDETRTL+YGQVFVQ S                G RS QR +IV+GKV+VAKNPCLHPG
Sbjct: 712  CLDETRTLDYGQVFVQVS----------------GSRSEQR-FIVQGKVVVAKNPCLHPG 754

Query: 1321 DLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQP 1142
            D+RVL AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI P
Sbjct: 755  DVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPP 814

Query: 1141 MDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMEL 962
            MDY+PA +   L+H+VTIE+++EYFTNY++NDSLG+IANAHT FAD+E   A S  C  L
Sbjct: 815  MDYSPAPTK-PLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWL 873

Query: 961  ARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQT 782
            A+LFS+AVDFPKTGVPA IP  L VKEYPDFMEK DKP+Y S  VIGKLFREVK++ P  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNE 933

Query: 781  NCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXX 602
              I S T    ++ YD DME DG+EDY+DDA+Y K  YD+KLGNLM YYGIKTEAE    
Sbjct: 934  CFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSG 993

Query: 601  XXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYH 422
                   SF +++DAEA+G+AV+SL+KEAR+WF++KG+     A + YAKASAWYHVTYH
Sbjct: 994  GIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYH 1053

Query: 421  PNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 257
            P+YWG+YNEGM R+HFLSFPWCVYDKLI IKK  + RR      L   F  GLRL
Sbjct: 1054 PSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1320 bits (3417), Expect = 0.0
 Identities = 665/1002 (66%), Positives = 776/1002 (77%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            K +   V FGFGLRK  F L H   EYKLE+S ++IW IQLR PR    KFLLIQ+L AP
Sbjct: 117  KAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAP 176

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +IYEK               YFK+  +DQWVR  DFT S  IGQSSA+CLELP+  + P 
Sbjct: 177  QIYEKD---------VSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP- 226

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
               ENF  YKE++ +F +ESG+SFS NL LVPIVGPP+G  LP+++LFKIN LVQNGCL+
Sbjct: 227  NFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLS 286

Query: 2767 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2588
            GPTLD  FF  V+PQ I  ++IEHALE+LY+L ECCYEPV+WL EQY  Y  S     +P
Sbjct: 287  GPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSP 345

Query: 2587 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2408
             ISL  GLVY+RRVQITP KVYFC PEV VSNRVLRNY   +DNF+RVSF+DE  EK+ S
Sbjct: 346  AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHS 405

Query: 2407 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2228
            T +SPR S   + + T +YRRILS L+NGIVIGDKKFD LA SSSQLR++SAWMFAS+ G
Sbjct: 406  TVISPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPG 463

Query: 2227 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 2048
            LTAA IR  MGDF +IRNVAKYAARLGQSFSSSKETL V              R G  Y+
Sbjct: 464  LTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYV 523

Query: 2047 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1868
            FSDGIGKIS   A +VA KCG  +  PSAFQIRYGGYKGVVAVDPTS  KLSLRKSMFKY
Sbjct: 524  FSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 583

Query: 1867 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1688
             S+NT LDVL+WSK +PCFLNRQLITLLSTLGV+DH+FEKKQ+E VDQLD IL DP+RAQ
Sbjct: 584  ESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQ 643

Query: 1687 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1508
            EAL++MSPGEN N+LKEML+CGYKPDAEPFLSMMLQTFRA+KL ELR ++RI++PNGRSM
Sbjct: 644  EALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 703

Query: 1507 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1328
            MGCLDETRTLEYG+VFVQ SG G +Q   + L+ Y G  S+  N+I+EGKV+VAKNPCLH
Sbjct: 704  MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFY-GSGSHHDNFILEGKVVVAKNPCLH 762

Query: 1327 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 1148
            PGD+R+L AV+VP LHHMVDCVVFPQKG+RPHP+ECSGSDLDGD+YFV WD++LIPPRQI
Sbjct: 763  PGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQI 822

Query: 1147 QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 968
             PMDYTPA + V LDHDV IE+++EYFTNY+ ND LG+IANAHT FADKE   A    C 
Sbjct: 823  NPMDYTPAPTKV-LDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCK 881

Query: 967  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 788
            ELA+LFS+A++FPKTGVPA IP HLHVKEYPDFMEK +KP+Y SQ VIGKLFREVK++ P
Sbjct: 882  ELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAP 941

Query: 787  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 608
                + SFT  VA +SYD+DME DGFEDY+ DA+Y K +YDFKLG+LM+  GI+TE+E  
Sbjct: 942  HNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEIL 1001

Query: 607  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 428
                     SFD++KDAEA+ LAV+SL+KEAR WF+  GS +   A + YA ASAWYHVT
Sbjct: 1002 SGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVT 1061

Query: 427  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQL 302
            YHP YWG YNEGM  DHFLSFPWCVYDKLI IK++    R L
Sbjct: 1062 YHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSL 1103


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1318 bits (3411), Expect = 0.0
 Identities = 656/1018 (64%), Positives = 783/1018 (76%), Gaps = 1/1018 (0%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            K     +NFG G+RK+EFLL +C  +YKLE+ Y++IW I+LR P +   K LLIQ+  AP
Sbjct: 117  KADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAP 176

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +IYEK              +YFKD  +DQWVR TDFT S CIGQSS + LELP++ + P 
Sbjct: 177  RIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP- 235

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
              RENF YYKE+EG+  +ESGSS+S NL LVPIV P R I+LP+E+LFK+NLLVQNGC+ 
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIP 295

Query: 2767 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2588
            GP LD  F+  V+P  +   YI+HALE+LY+L ECCYEP +WL E+Y  + +S  +  +P
Sbjct: 296  GPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSP 355

Query: 2587 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2408
             ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN +DNF+R+SFVDEE EK+ S
Sbjct: 356  TISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHS 415

Query: 2407 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2228
            T++  R       + T IY+RILSTLRNGIVIG+K+F+ LAFSSSQLRE+SAWMFAS+ G
Sbjct: 416  TNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 2227 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 2048
            LTAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              + G+KY+
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 529

Query: 2047 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1868
            FSDGIGKIS  FA+KVA KC +    PSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY
Sbjct: 530  FSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKY 589

Query: 1867 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1688
             S+NT LDVL WSK QPCFLNRQLITLLSTLGV D  FEKKQ+EVVDQL+ +LTDP+ AQ
Sbjct: 590  ESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQ 649

Query: 1687 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1508
            EAL++MSPGEN N+LKEMLLCGYKPDAEPFLSMML+TFRASKL ELR ++RI++  GRSM
Sbjct: 650  EALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSM 709

Query: 1507 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1328
            MGCLDETRTL YGQVFVQFSG                   ++R +IV+GKVIVAKNPCLH
Sbjct: 710  MGCLDETRTLNYGQVFVQFSG-----------------SRSERRFIVQGKVIVAKNPCLH 752

Query: 1327 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 1148
            PGD+RVL+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFV WD ELIP +QI
Sbjct: 753  PGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI 812

Query: 1147 QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 968
             PMDY+PA S  +LDH+VTIE+I+EYFTNY++NDSLG+I+NAHTAFAD+E   A S  C+
Sbjct: 813  DPMDYSPA-STTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCL 871

Query: 967  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 788
            ELA+LFS+AVDFPKTGVPA IP  L VKEYPDFMEK DKPSY S  VIGKLFREVK + P
Sbjct: 872  ELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAP 931

Query: 787  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 608
                I   T    ++ YD DME +GFEDY+DDA++ K KYD+KLGNLM+YYG+KTEAE  
Sbjct: 932  NECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEIL 991

Query: 607  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 428
                     SF +K+DAEA+ +AV+SL+KEAR+WF++KGS+  E   + YAKASAWY+VT
Sbjct: 992  GGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVT 1051

Query: 427  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSK-RRQLDEPPLNYQFKHGLRL 257
            YHP+YWG YNEGM RDHFLSFPWCVYDKLI IKK  +  R  LD   L ++F+ GL L
Sbjct: 1052 YHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1316 bits (3405), Expect = 0.0
 Identities = 653/1018 (64%), Positives = 783/1018 (76%), Gaps = 1/1018 (0%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            K     +NFG G+RK+EFLL +C  +YKLE+ Y++IW I+LR P +   K LLIQ+  AP
Sbjct: 117  KADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAP 176

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +IYEK              +YFKD  +DQWVR TDFT S CIGQSS +CLELP++ + P 
Sbjct: 177  RIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP- 235

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
              RENF YYKE+EG+  +ESGSS+S NL LVPIV P R I+LP+E+LFK+NLLVQNGC+ 
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIP 295

Query: 2767 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2588
            GP LD  F+  V+P  +   YI+HALE+LY+L ECCYEP +WL E+Y  + +S  +  +P
Sbjct: 296  GPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSP 355

Query: 2587 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2408
             ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN +DNF+R+SFVDEE EK+ S
Sbjct: 356  TISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHS 415

Query: 2407 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2228
            T++  R       + T IY+RILSTLRNGIVIG+K+F+ LAFSSSQLRE+SAWMFAS+ G
Sbjct: 416  TNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 2227 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 2048
            LTAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V              + G+KY+
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 529

Query: 2047 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1868
            F DGIGKIS  FA+KVA KC +    PSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY
Sbjct: 530  FPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKY 589

Query: 1867 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1688
             S+NT LDVL WSK QPCFLNRQLITLLSTLGV D+ FEKKQ+EVVDQL+ +LTDP+ AQ
Sbjct: 590  ESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQ 649

Query: 1687 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1508
            EAL++MSPGEN N+LKEMLLCGYKPDAEPFLSMML+TFRASKL ELR ++RI++  GRSM
Sbjct: 650  EALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSM 709

Query: 1507 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1328
            MGCLDETRTL YGQVFVQFSG                   ++R +IV+GKVIVAKNPCLH
Sbjct: 710  MGCLDETRTLNYGQVFVQFSG-----------------SRSERRFIVQGKVIVAKNPCLH 752

Query: 1327 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 1148
            PGD+RVL+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFV WD ELIP +QI
Sbjct: 753  PGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI 812

Query: 1147 QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 968
             PMDY+PA S  +LDH+VTIE+I+EYFTNY++NDSLG+I+NAHTAFAD+E G A S  C+
Sbjct: 813  DPMDYSPA-STTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCL 871

Query: 967  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 788
            ELA+LFS+AVDFPKTGVPA IP  L VKE+PDFMEK DKPSY S  VIGKLFREVK + P
Sbjct: 872  ELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAP 931

Query: 787  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 608
                I   T    K+ YD DME +GF DY+DDA++ K KYD+KLGNLM+YYG+KTEAE  
Sbjct: 932  NECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEIL 991

Query: 607  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 428
                     SF +K+DAE++ +AV+SL+KEAR+WF++KGS+  E   + YAKASAWY+VT
Sbjct: 992  SGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVT 1051

Query: 427  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQ-LDEPPLNYQFKHGLRL 257
            YH +YWG YNEGM RDHFLSFPWCVYDKLI IKK  +  R+ LD   L ++F+ G  L
Sbjct: 1052 YHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1311 bits (3394), Expect = 0.0
 Identities = 652/1013 (64%), Positives = 785/1013 (77%), Gaps = 2/1013 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG GLR++ F L +  VEY+L++ Y+++W I+L RPR    K+LLIQ+L AP++YEK 
Sbjct: 124  VDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEKE 183

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         +YFKD  +DQWVRATDFT S CIG SSA+ LELPY  + P  +RENF
Sbjct: 184  VRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP-DLRENF 242

Query: 2929 PYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTLDA 2750
             YYKE E +F +ESGSSFS NLDLVPIVGPP GI LP+E +FKIN+L+QNGCL+GPTLD 
Sbjct: 243  VYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLDV 302

Query: 2749 PFFASVNPQFIPSA-YIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISLG 2573
             F+  V+PQ I +   I +ALE+L++L EC YEP  WL+EQY KY  +   P  P I+L 
Sbjct: 303  DFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIALD 362

Query: 2572 DGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLSP 2393
             GLVY+RRVQ+TPSKVYFC PE+ VSNRVLR Y + +D F+RVSFVDEE EKL STDLSP
Sbjct: 363  SGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTDLSP 422

Query: 2392 RTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAAC 2213
            RTS   + + T IYRRILS LRNGI IGD+KF+ LAFSSSQLR++S WMFA+ DG +A  
Sbjct: 423  RTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHSADT 482

Query: 2212 IREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDGI 2033
            IR+W+GDFR IRNVAKYAARLGQSF SS ETLTV              R  VKY+FSDGI
Sbjct: 483  IRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFSDGI 542

Query: 2032 GKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDNT 1853
            GKIS++FA++VAKKCG+   VPSAFQIRY GYKGVVAVDPTS TKLSLRKSM+KY S+  
Sbjct: 543  GKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYESELH 602

Query: 1852 GLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALDV 1673
             LDVL +SK Q C+LNRQLITLLSTLGV D +FEKKQ+E V QL+ IL DP+RA+EALD+
Sbjct: 603  KLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREALDL 662

Query: 1672 MSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCLD 1493
            MS GE  N+LKE+L CGY+P+AEPFLSMMLQ FRASKLQELR ++RI IP+GR+MMGCLD
Sbjct: 663  MSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMGCLD 722

Query: 1492 ETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDLR 1313
            E RTLEYG+VFVQFSG   +   ++  +   G   + +NYIV G+V+VAKNPCLHPGD+R
Sbjct: 723  EMRTLEYGEVFVQFSGITHRPFFEDSFML--GGTGSGQNYIVVGRVVVAKNPCLHPGDVR 780

Query: 1312 VLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMDY 1133
            VL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD+ELIP +Q +PMDY
Sbjct: 781  VLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMDY 840

Query: 1132 TPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELARL 953
            +PA +  RLDHDV IE++QEYFTNY++NDSLG+IANAHTAFADKE   A S +C+ELARL
Sbjct: 841  SPAPT-TRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899

Query: 952  FSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNCI 773
            FS+AVDFPKTGVPA IP  L+VKEYPDFMEKL+KP+Y SQ VIGKLFREVK+I P    +
Sbjct: 900  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959

Query: 772  PSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXXX 593
              FT  VA +SYD DME+DGFEDY+DDA+Y K  YD+KLGNL++YYGIK+EAE       
Sbjct: 960  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019

Query: 592  XXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPNY 413
                SF +++DAE++ +AV++L+KEAR WF++KGS     A + YAKASAWY+VTYH +Y
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079

Query: 412  WGIYNEGMKRDHFLSFPWCVYDKLIHIKKNN-SKRRQLDEPPLNYQFKHGLRL 257
            WG YNEGM RDH+LSFPWCVYDKL+ IK++  S RR L    L   F   L L
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score = 1260 bits (3261), Expect = 0.0
 Identities = 632/1017 (62%), Positives = 761/1017 (74%)
 Frame = -3

Query: 3307 KGVGAVVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAP 3128
            KG    V FG G++K+ F L H  VEYK+++SY++IW I L        K L+IQ+  AP
Sbjct: 117  KGESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAP 176

Query: 3127 KIYEKPQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPP 2948
            +IY+K               YF    +DQWVR TDFT S  IGQSS++CL+LPY    P 
Sbjct: 177  RIYKK--------LSGSVYSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLP- 226

Query: 2947 QIRENFPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLA 2768
              R+NF YYKE E  F +E+G  FSHN DLVPIV PP  I+LPY +LFK+  LVQ GCL 
Sbjct: 227  NFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLP 286

Query: 2767 GPTLDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAP 2588
            GP LD  FF  VNP      YIEHALE+LY+L ECCY P  WL EQY +YR S   P +P
Sbjct: 287  GPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSP 346

Query: 2587 GISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRS 2408
             I L DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y + +DNF+RVSFVDEE +K+ S
Sbjct: 347  AICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYS 406

Query: 2407 TDLSPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDG 2228
            TDLSPR +  ++ K T +Y R++S LR+G+ IGD+KFD LAFSSSQLR++S WMFA  DG
Sbjct: 407  TDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDG 466

Query: 2227 LTAACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYI 2048
            L A  IREWMGDF  IRNVAKYAARLGQSF SS ETL+V              ++G +Y 
Sbjct: 467  LNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSV---SKREIEEIQDVKNGTEYT 523

Query: 2047 FSDGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKY 1868
            FSDGIGKIS  FA++VA KCG+    PSAFQIRYGGYKGVVAVDP+S  KLSLR SM KY
Sbjct: 524  FSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKY 583

Query: 1867 TSDNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQ 1688
             SDNT LDVL WSK QPCFLNRQ+ITLLSTLGV+DH+FEK+Q+E V QLD +L DP+RAQ
Sbjct: 584  QSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQ 643

Query: 1687 EALDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSM 1508
            EALD+MSPGEN ++LKEML CGY+PD EPFLSMMLQTFRASKL +LR ++R++IP  R M
Sbjct: 644  EALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQM 703

Query: 1507 MGCLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLH 1328
            MGCLDET  L+YGQVFV++SG   + + D+   +Y    +N+R   V GKV+VAKNPCLH
Sbjct: 704  MGCLDETGILKYGQVFVRYSGAVKRGLFDD---SYDNSTANERFDPVRGKVVVAKNPCLH 760

Query: 1327 PGDLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQI 1148
            PGD+RVL AV+VP+L HMVDCVVFP+ G RPHPNECSGSDLDGD+YFV WD++LIP +Q+
Sbjct: 761  PGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQV 820

Query: 1147 QPMDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACM 968
            +PMDY PA +  RLDHDVTIE++++YFTNY++NDSLG+IANAHT FADKE  MA S  C+
Sbjct: 821  EPMDYNPAPT-TRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCL 879

Query: 967  ELARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITP 788
            ELARLFS+AVDF KTG+PA IPPHL VKEYPDFMEK DK +Y S RVIGKLFREVK+I P
Sbjct: 880  ELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAP 939

Query: 787  QTNCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXX 608
            QT+   SFT  VA++SYD DME DGFED++D+A+  K +YD+KLGNLM YYG+KTEAE  
Sbjct: 940  QTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVL 999

Query: 607  XXXXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVT 428
                     +FDR+KDAEA+G AV+SL+ EAR+WF     K G  A + YAKASAWY+VT
Sbjct: 1000 SGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF-----KKGTEADDVYAKASAWYYVT 1054

Query: 427  YHPNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 257
            YHP+Y+G YNEGMKRDH+LSFPWCVYDKL+ IKK+NS RR      L  QF   +R+
Sbjct: 1055 YHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNS-RRASQMASLRRQFNDRVRI 1110


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1257 bits (3252), Expect = 0.0
 Identities = 638/1015 (62%), Positives = 768/1015 (75%), Gaps = 3/1015 (0%)
 Frame = -3

Query: 3292 VVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEK 3113
            +VNFG G+RK+ FL  H  V+YKLE+SY++IW I+L RPRN   ++LLIQ+L AP+++E 
Sbjct: 126  IVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFEN 185

Query: 3112 PQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIREN 2933
                          ++FKD  ++QW+RA DFT    IGQSSAICLELP   + P   REN
Sbjct: 186  DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP-NFREN 244

Query: 2932 FPYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTLD 2753
            F YY+E E Q+ +++G  FS N  LVPIV PP G+++ Y++LFK+N LVQ+ CLAGP LD
Sbjct: 245  FAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALD 304

Query: 2752 APFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISLG 2573
              F+  V+P+ +P  +IE+ALE++Y+  E CYEP KWL +QY  Y +S + P +P ISL 
Sbjct: 305  GDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLD 364

Query: 2572 DGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLSP 2393
             GLVY+RRVQITP KVYFC PE+ VSNRVLR++   +DNF+RVSFVDEE +KL STDLS 
Sbjct: 365  TGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFSTDLSS 424

Query: 2392 RTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFA-SKDGLTAA 2216
            R+      K T IY RILS L+NGIV+GDKKF+ LAFSSSQLRE+S WMFA ++ G TAA
Sbjct: 425  RSQN----KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAA 480

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXR-SGVKYIFSD 2039
             IR+WMG+F +IRNVAKYAARLGQSF SS ETL+V                 G +Y+FSD
Sbjct: 481  YIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFSD 540

Query: 2038 GIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSD 1859
            GIGKIS  FAQKVAKKCG D   PSAFQIRYGGYKGVVAVDP S  KLSLRKSM KY SD
Sbjct: 541  GIGKISLEFAQKVAKKCGYD-CTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSD 599

Query: 1858 NTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEAL 1679
            NT LDVL  SK QPC+LNRQLI+LLSTLG++D +FEKKQ+E V+QL+ ILTD ++AQE L
Sbjct: 600  NTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVL 659

Query: 1678 DVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGC 1499
            D+MS GE  NVLKEML+CGYKP+ EPFLSMMLQTFRASKL ELR +SRI+IP GR+MMGC
Sbjct: 660  DLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGC 719

Query: 1498 LDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGD 1319
            LDETRTLEYGQVFVQFS    + +SD+            +NY+V+GKV+VAKNPCLHPGD
Sbjct: 720  LDETRTLEYGQVFVQFSNNRLQNLSDDFF-----SYDLPKNYMVKGKVVVAKNPCLHPGD 774

Query: 1318 LRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPM 1139
            +RVLQAV+VPDL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD+ELIP R I PM
Sbjct: 775  VRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPM 834

Query: 1138 DYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELA 959
            DYT A + V LDHDV IE+++EYF NY++NDSLG+IANAHT FADKE   A S  C++LA
Sbjct: 835  DYT-APATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLA 893

Query: 958  RLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTN 779
            RLFS AVDFPKTGVPA IPP LHVKEYPDFMEK DKP+Y S  VIGKLFREVKEI+    
Sbjct: 894  RLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAG 953

Query: 778  CIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXX 599
             I SFT  VA+ SYD +ME DGF DY+DDA+Y K  YD+KLGNLM+YYGIKTEAE     
Sbjct: 954  SITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGN 1013

Query: 598  XXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGET-AGEKYAKASAWYHVTYH 422
                  SF++++DAEA+ +AV+SL+KEAR WF++  S   ++ + + YAKASAWYHVTYH
Sbjct: 1014 IMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYH 1073

Query: 421  PNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLRL 257
            P+YWG YNEGM RDH+LSF WCVY  L+ IKK   ++  +    L Y F  GLRL
Sbjct: 1074 PSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKK---EKLSIRRSSLEYSFS-GLRL 1124


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1253 bits (3241), Expect = 0.0
 Identities = 633/1010 (62%), Positives = 765/1010 (75%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FGFG+R ++F L++    Y+L++SY++IW I+L   R    K+L+IQ+   P+IY++ 
Sbjct: 122  VDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQ- 180

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
            +            +YF+D   D WVR TDFT   CIGQSS++CL L    E P    ENF
Sbjct: 181  EVCSSGGNGYEDMNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELP-DFEENF 237

Query: 2929 PYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTLDA 2750
             YYK+ +GQF +E+GS+FS N DLVPIVG P GI+LPY++LFKINLLVQ GCL+GPTLD 
Sbjct: 238  AYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDN 297

Query: 2749 PFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISLGD 2570
             F+  V+P+ I    IE AL++L +L E CYEP  WL+E+Y KY  S   P    ISL  
Sbjct: 298  NFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDS 357

Query: 2569 GLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLSPR 2390
            GLVY+RRVQITPSKVYF  PEV VSNR+LR Y + +DNF+RVSFVDEE EKL STDLSPR
Sbjct: 358  GLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPR 417

Query: 2389 TSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAACI 2210
            TS     + T IY R+LS LR+GIV+G KKF+ LAFSSSQLRE+S WMFA  D  +A  I
Sbjct: 418  TST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTI 473

Query: 2209 REWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDGIG 2030
            R  MGDFR+IRNVAKYAARLGQSF SS ETL+V                G+KY+FSDGIG
Sbjct: 474  RAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIG 533

Query: 2029 KISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDNTG 1850
            KIS  FA++VAKKCG   F PSAFQIRYGGYKGVVAVDPTS  KLSLRKSM KY S+NT 
Sbjct: 534  KISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESENTK 593

Query: 1849 LDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALDVM 1670
            LDVL  SK QPCFLNRQLITLLSTL V+DH+F KKQ+  V QL+ ILTDP++A+EALD+M
Sbjct: 594  LDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLM 653

Query: 1669 SPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCLDE 1490
            S GE+ NVLKE+L+CGYKP+ EPFLSMMLQTFRASKL ELR ++RI+IP+GR+MMGCLDE
Sbjct: 654  SAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDE 713

Query: 1489 TRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDLRV 1310
            TRTLEYGQVFVQFSG   +Q+ D++ +      S    +I+EGKV+VAKNPCLHPGD+RV
Sbjct: 714  TRTLEYGQVFVQFSGKRRRQLFDDICI----HSSLDSCFIIEGKVVVAKNPCLHPGDVRV 769

Query: 1309 LQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMDYT 1130
            L+AVNVPDLHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIPP+QIQPMDYT
Sbjct: 770  LRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYT 829

Query: 1129 PATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELARLF 950
            PA   + +D DVTIE+++EYF NY++NDSLG+IANAHT FAD +   A S  C++LA+LF
Sbjct: 830  PAPP-IEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888

Query: 949  SVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNCIP 770
            S+AVDFPKTGVPA IPP L+ KEYPDFMEK DK +Y S  VIG+LFREVK+I P  + I 
Sbjct: 889  SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948

Query: 769  SFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXXXX 590
            SFT  VA K YD DME DGFEDYL+DA+Y KG YD+KLGN+++YYGIKTEAE        
Sbjct: 949  SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008

Query: 589  XXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPNYW 410
               SF +++DA+A+ +AVKSL+KEAR WF++K +       + YAKASAWYHVTYHPNY+
Sbjct: 1009 LSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYF 1068

Query: 409  GIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDEPPLNYQFKHGLR 260
            G+YNEGM R HF+SFPWCV+DKL HIKK    + +L    L  + ++GLR
Sbjct: 1069 GLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLIS-SLENRLRYGLR 1117


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1242 bits (3214), Expect = 0.0
 Identities = 622/996 (62%), Positives = 753/996 (75%), Gaps = 2/996 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            + FG GL+K+ F L H   +YKL++SY++IW + L RP     +FLL+Q+  AP+IY++ 
Sbjct: 121  IKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRL 180

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
            +             +FK+  +DQWVR TDFT S+ IG SS++CLE     + P    E+F
Sbjct: 181  EDSCY--------SFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLP-NFSESF 230

Query: 2929 PYYKEDEGQFCVESGS--SFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
             YYKE   QF +++G   SFS  L LVPIV  P GIELPY++LFKI+ L+Q+GC  G  L
Sbjct: 231  FYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLAL 290

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            +  FF  V+P+    A IEHALE+LY+L ECCY+PV+WL EQY +Y +    P +P I+L
Sbjct: 291  NFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITL 350

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVY+RRV +TP KVYFC PEV VSNRVLRNY   ++NF+RVSFVDEE EK+ STDL 
Sbjct: 351  DDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLL 410

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR S T +   T IY RILSTLRNG +IGDK+F+ LAFSSSQLR++S WMFAS+ GLTA 
Sbjct: 411  PRAS-TGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTAN 469

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDFR+IRNVAKYAARLGQSF SS+ETL+V                G  YIFSDG
Sbjct: 470  DIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDG 529

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS  FA +V  KCG+  + PS+FQIRYGGYKGVVAVDP S  KLSLRKSM KY S+N
Sbjct: 530  IGKISADFAHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNN 588

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
              LDVL WSK QPC+LNRQL+TLLSTLGV D + E+KQ E VDQLD IL D ++AQEAL+
Sbjct: 589  IKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALE 648

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKL +LR R+RI+IPNGR+MMGCL
Sbjct: 649  LMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCL 708

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DE+RTLEYGQVFVQFSG G +Q  +     +    S   ++I++G V+VAKNPCLHPGD+
Sbjct: 709  DESRTLEYGQVFVQFSGAGRRQFFEES-HPFNDSGSANCDFILKGNVVVAKNPCLHPGDI 767

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +LIPPRQ+Q MD
Sbjct: 768  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMD 827

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTPA +  +LDHDVTIE+++EYFTNY++NDSLG+IANAH  FAD+E  MA S  C +LA+
Sbjct: 828  YTPAPT-TQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQ 886

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
            LFS+AVDFPKTGVPA IP  L  KEYPDFMEK DKP+YPS++VIGKLF++VK  TPQ + 
Sbjct: 887  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASS 946

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I +FT  VA+KSYDSDM  DGFEDY+D+A+Y K +YD KLGNLM+YYGIKTEAE      
Sbjct: 947  IATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1006

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 +FDR+KDAEA+G+AV+ L+KEAR WF     K      +  AKASAWYHVTYH  
Sbjct: 1007 MKASKTFDRRKDAEAIGVAVRCLRKEARAWF-----KRRSDIDDMLAKASAWYHVTYHHT 1061

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRR 308
            YWG+YNEG+KRDHF+SFPWCVYD+LI IKK  +++R
Sbjct: 1062 YWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 623/1000 (62%), Positives = 753/1000 (75%), Gaps = 2/1000 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG G+RK+ F +     +Y+LE+SY++IW I L  P+    KFL+IQV+ APKI+EK 
Sbjct: 124  VSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFEKE 183

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P   RENF
Sbjct: 184  DQPVNFLFGMM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP-DFRENF 240

Query: 2929 PYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
              Y E     F ++SGSS+S N + LVP+V PP G +LP+E+LFK+N LVQN CL GP L
Sbjct: 241  ANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPAL 300

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            D  F+  +NP+    A I+H+LE+L+HL ECCYEP +WL E+Y K   S   P +P ISL
Sbjct: 301  DLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTISL 360

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVYI RV +TP++VYF  PEV VSNRVLR+Y   ++NF+R+SFVDE+ EK+ S DLS
Sbjct: 361  DDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDLS 420

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA +D LTAA
Sbjct: 421  PRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAA 477

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                  +Y+FSDG
Sbjct: 478  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDG 537

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS  FA+KVAKKCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K+ S N
Sbjct: 538  IGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESGN 597

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
            T LDVL WSK QPC+LNRQ+ITLLSTLGV+D++FEKKQ+EVVD+LD ILTDP+ A EAL 
Sbjct: 598  TKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAHEALG 657

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +M+PGEN N+LK++LLCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+IP GRSMMGCL
Sbjct: 658  LMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCL 717

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DETRTLEYGQV VQ+S             T  GKR     YI+ G V+VAKNPCLHPGD+
Sbjct: 718  DETRTLEYGQVVVQYSN-----------PTMPGKR-----YIITGPVVVAKNPCLHPGDV 761

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVLQAVNVP L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF+ WD+ELIPPR  +PMD
Sbjct: 762  RVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPMD 821

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C+ELAR
Sbjct: 822  YTPEPAQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 880

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
             FS+AVDFPKTG+ A IP HL+VKEYPDFM+K DKP+Y S+ VIGKLFREVKE  P    
Sbjct: 881  KFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPLIS 940

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I SFT  VA KSYD DME +GFE+Y+D+A++ KG YD++LGNLM+YYGIKTEAE      
Sbjct: 941  IRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGI 1000

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 SF +++DAE++G AV++L+KEA +WF++   K+     ++ AKASAWYHVTYH +
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKND---FDESAKASAWYHVTYHSS 1057

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 296
            YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1058 YWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQE 1097


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1235 bits (3196), Expect = 0.0
 Identities = 618/997 (61%), Positives = 753/997 (75%), Gaps = 3/997 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            + FG GL+K+ F L +   +YKL++SY++IW + L RP   + +FLL+Q+  AP+IY++ 
Sbjct: 121  IKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKRL 180

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
            +             +FK+  +DQWVR TDFT S+ IG SS++CLE       P    E+F
Sbjct: 181  EDSCY--------SFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLP-NFSESF 230

Query: 2929 PYYKEDEGQFCVESGSSFSHN---LDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPT 2759
             YYKE   Q  +++G +FS +   L LVPIV  P GIELPY++LFKI+ L+Q+GC  G  
Sbjct: 231  FYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLA 290

Query: 2758 LDAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGIS 2579
            L+  FF  V+P+    A IEHALE+LY+L ECCY+PV+WL EQY +Y +    P +P I+
Sbjct: 291  LNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSIT 350

Query: 2578 LGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDL 2399
            L DGLVY+RRV +TP KVYFC PEV VSNRVLRNY   +DNF+RVSFVDEE EK+ STDL
Sbjct: 351  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDL 410

Query: 2398 SPRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTA 2219
             PR S T +   T IY RILSTLRNG VIGDKKF+ LAFSSSQLR++S WMFAS+ GLTA
Sbjct: 411  LPRAS-TGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTA 469

Query: 2218 ACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSD 2039
              IR WMG F++IRNVAKYAARLGQSF SS+ETL+V                G  YIFSD
Sbjct: 470  NDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSD 529

Query: 2038 GIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSD 1859
            GIGKIS  FA++VA KCG+  + PS FQIRYGGYKGVVAVDP S  KLSLR SM KY S+
Sbjct: 530  GIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESN 588

Query: 1858 NTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEAL 1679
            N  LDVL WSK QPC+LNRQL+TLLSTLGV+D +FE+KQ E VDQLD IL D ++AQEAL
Sbjct: 589  NIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEAL 648

Query: 1678 DVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGC 1499
            ++MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKL +LR RSRI+IPNGR+MMGC
Sbjct: 649  ELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGC 708

Query: 1498 LDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGD 1319
            LDE+RTLEYGQVFVQF+G G +Q  +     +    S   ++I+EG V+VAKNPCLHPGD
Sbjct: 709  LDESRTLEYGQVFVQFTGTGRRQFYEES-HPFNDSGSTNCDFILEGNVVVAKNPCLHPGD 767

Query: 1318 LRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPM 1139
            +RVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD +L+PPRQ QPM
Sbjct: 768  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPM 827

Query: 1138 DYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELA 959
            DYTPA S  +LDHDVTIE+++EYFTNY++NDSLG+IANAH  FAD+E  MA S  C +LA
Sbjct: 828  DYTPAPS-TQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLA 886

Query: 958  RLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTN 779
            +LFS+AVDFPKTGVPA IP  L  KEYPDFMEK DKP+Y S++VIGKLF++VK+ TPQ +
Sbjct: 887  QLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQAS 946

Query: 778  CIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXX 599
             I +FT  VA+KSYD DM  +GFEDY+D+A+Y K +YD KLGNLM+YYGIKTEAE     
Sbjct: 947  SIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGG 1006

Query: 598  XXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHP 419
                  +FDR+KDA+A+G+AV+SL+KEAR WF     K      +  AKASAWYHVTYH 
Sbjct: 1007 IMKASKTFDRRKDADAIGVAVRSLRKEARTWF-----KRRSDIDDMLAKASAWYHVTYHH 1061

Query: 418  NYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRR 308
             YWG YNEG+KRDHF+SFPWC+YD+LI IKK  ++++
Sbjct: 1062 TYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKK 1098


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score = 1234 bits (3194), Expect = 0.0
 Identities = 632/999 (63%), Positives = 759/999 (75%), Gaps = 3/999 (0%)
 Frame = -3

Query: 3292 VVNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEK 3113
            +V FG G+RK+ F L +  VEY+LE+SY+ IW IQL  PR+   K+LLIQ+  AP+IY+K
Sbjct: 123  LVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKK 182

Query: 3112 PQXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIREN 2933
                          ++FK+  +DQWVR TDFT+S  IGQSS++CL+LP   + PP  ++N
Sbjct: 183  VAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP-FKQN 241

Query: 2932 FPYYKEDEGQF-CVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
            F YY+E E +F  ++  ++FS   DL PIV   R   LPY++LFKIN LVQ GC+  P L
Sbjct: 242  FAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS-RSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 2755 DAPFFASVNPQFIPSA-YIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGIS 2579
            DA F+  V         ++EHALE+L+HL EC Y+P  +L EQY KY  S H PN+P IS
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPVIS 358

Query: 2578 LGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDL 2399
            L DGLVY+RRVQITP KV+FC PEV VSNRVLR++   +DNF+RVSFVDEE +K+RSTDL
Sbjct: 359  LDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDL 418

Query: 2398 SPR-TSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLT 2222
             PR +SK+ED K T IYRRILS L+NGIVIGDK F  LAFSSSQLR++S WMFAS   + 
Sbjct: 419  LPRMSSKSEDGK-TDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 477

Query: 2221 AACIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFS 2042
            AA IR WMGDFR I+N AKYAARLGQSF SS E L+V              +  +KY+FS
Sbjct: 478  AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFS 537

Query: 2041 DGIGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTS 1862
            DGIGKIS+ FA++VA KCG    VPSAFQIRYGGYKGVVAVDP S  KLSLRKSM K+ S
Sbjct: 538  DGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFES 596

Query: 1861 DNTGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEA 1682
            DNT LDVL  SK QPCFLNRQLITL+STLGVRD IFEKKQ E V+QLD ILTDP++AQEA
Sbjct: 597  DNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEA 656

Query: 1681 LDVMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMG 1502
            L++MSPGEN N+LKEML CGY+PD EP+LSMMLQTFRASKL ELR +SRI+IPNGR+MMG
Sbjct: 657  LELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMG 716

Query: 1501 CLDETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPG 1322
            CLDETRTLEYGQVFVQ S    + +S++      G+   + + ++EG V VAKNPCLHPG
Sbjct: 717  CLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGR---EHHLVIEGNVTVAKNPCLHPG 773

Query: 1321 DLRVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQP 1142
            D+RVL+AVN+P L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP RQI P
Sbjct: 774  DVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPP 833

Query: 1141 MDYTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMEL 962
            MDYTPA     LD DVT EDIQEYF NYM+NDSLG+IANAHTAFADKE   A S  C+EL
Sbjct: 834  MDYTPAPPN-ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL 892

Query: 961  ARLFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQT 782
            A+LFSVAVDFPKTGVPA IP HL+VKE+PDFMEK D+PSY S +VIGKLFR VK+I P  
Sbjct: 893  AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL 952

Query: 781  NCIPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXX 602
            + I SFT  VA++ YD DME +GFEDY++DA+Y K  YD+KLGNL++YYGIK+EAE    
Sbjct: 953  SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG 1012

Query: 601  XXXXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYH 422
                   SF R++DAEA+ LAV+SL+KEAR WF+ +   +   + + +AKASAWY+VTYH
Sbjct: 1013 SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYYVTYH 1071

Query: 421  PNYWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQ 305
             +YWG YNEGMKRDH+LSFPWCVYDKL+ IK+NN +RR+
Sbjct: 1072 HSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRE 1110


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 1229 bits (3181), Expect = 0.0
 Identities = 621/999 (62%), Positives = 748/999 (74%), Gaps = 6/999 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V FGFGL+K+ F L H GV+YKL++ Y++IW IQLRRP     ++L++Q+  AP+I++KP
Sbjct: 200  VEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKP 259

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         +Y+KD  ++QWVR+ DFT S  IGQSS++CL LP     P  IRENF
Sbjct: 260  LSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIP-NIRENF 318

Query: 2929 PYYKEDEGQFCVESGSSFSHNLDLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTLDA 2750
             YYKE  G F +++GSSFSH+L LVPIV PP  I+LPY++LF++N LVQNG L GPTLD 
Sbjct: 319  AYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDT 378

Query: 2749 PFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISLGD 2570
             F+  +N   +PS ++E +LE +  L  CC EP KWL EQY KYR     P+   ISL  
Sbjct: 379  EFYNLLNG--LPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPAAISLEP 436

Query: 2569 GLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLSPR 2390
            GLVY+ RVQ+TPSKVYF  PEV VSNRVLR + N +DNF+R+SF+DE+   +RSTDLS R
Sbjct: 437  GLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKR 496

Query: 2389 TSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAACI 2210
             +   + KHT +Y R+LSTL+NGIVIGDKKF+ LAFSSSQLR++SAWMF+  DG+TAA I
Sbjct: 497  MASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDGITAANI 556

Query: 2209 REWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDGIG 2030
            R+WMGDF  IRNVAK AAR+GQSF SS ETL V                  KY+FSDGIG
Sbjct: 557  RQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNG----KYVFSDGIG 612

Query: 2029 KISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDNTG 1850
            KIS  FA+KVA KCG     PSAFQIRYGGYKGVVAVDPTS  KLSLR SM KY+S+NT 
Sbjct: 613  KISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNNTK 672

Query: 1849 LDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALDVM 1670
            LDVL +SK QPCFLNRQ+ITLLSTLGV+D++FE KQK+ V QLD IL DP  A EAL++M
Sbjct: 673  LDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALELM 732

Query: 1669 SPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCLDE 1490
            SPGENVNVLKEML CGY PD+EPFLSMMLQTFR  KL EL+ ++RI+IPNGRSMMGCLDE
Sbjct: 733  SPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDE 792

Query: 1489 TRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDLRV 1310
            T  LEYGQVFVQFS  G +++ +  L       S+QR  +V GKVIVAKNPCLHPGD+R+
Sbjct: 793  TGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRI 852

Query: 1309 LQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMDYT 1130
            L A++VP LHHMV+CVVFPQKG RPHPNECSGSDLDGD+YFVSWD  LIP  Q  PM+Y 
Sbjct: 853  LTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYE 912

Query: 1129 PATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELARLF 950
            PA +   LDH+VTIE+I+EYFTNYM+NDSLG+IANAHT FADKE   A+S  C++LA LF
Sbjct: 913  PAPNN-DLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLF 971

Query: 949  SVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNCIP 770
            SVAVDFPKTGVPA IP HL+VKEYPDFM+K DKP+Y S+RVIGKLFREVK++ P T+ I 
Sbjct: 972  SVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAIT 1031

Query: 769  SFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXXXX 590
            SFT +VA KSYD DME DGFE YLDDA++ K +YDFKL  LM++YGIKTEAE        
Sbjct: 1032 SFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILS 1091

Query: 589  XXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGE----TAGEKYAKASAWYHVTYH 422
               SF +++DAEA+ LA++SL+KE R WF +K S   E       + YAKASAWYH+TYH
Sbjct: 1092 LAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYH 1151

Query: 421  PNYWGIY--NEGMKRDHFLSFPWCVYDKLIHIKKNNSKR 311
            P YWG Y   +G  R HF+SFPWC+YDKLIHIK++   R
Sbjct: 1152 PEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGR 1190


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 1223 bits (3165), Expect = 0.0
 Identities = 619/1000 (61%), Positives = 740/1000 (74%), Gaps = 2/1000 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ APKI+EK 
Sbjct: 124  VSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE 183

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P   RENF
Sbjct: 184  DQPINLLFGIM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-DFRENF 240

Query: 2929 PYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
              Y E     F +ESGSS+S N + LVP+V PP G  LP+E+LFK+N LVQN CL+GP L
Sbjct: 241  ANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPAL 300

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            D  F+  +N +    A I+H LE+L+HL ECCYEP  WL ++Y K+      P +P ISL
Sbjct: 301  DLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL 360

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+RS DLS
Sbjct: 361  DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS 420

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  D +TAA
Sbjct: 421  PRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAA 477

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y+FSDG
Sbjct: 478  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 537

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS  FA+KVA+KCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K+ S+N
Sbjct: 538  IGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 597

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
            T LDVL WSK QPC++NRQLITLLSTLGV D +FEKKQ+EVVD+LD ILT P+ A EAL 
Sbjct: 598  TKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALG 657

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GRSMMGCL
Sbjct: 658  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 717

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPCLHPGD+
Sbjct: 718  DETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPCLHPGDV 761

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVLQAVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD EL+PPR  +PMD
Sbjct: 762  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 821

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C+ELA+
Sbjct: 822  YTPEPTQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
             FS AVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE  P    
Sbjct: 881  KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I SFT  VA KSYD DME DGFE+Y+D+A+Y K  YDFKLGNLM+YYGIKTEAE      
Sbjct: 941  IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 SF +++DAE++G AV++L+KE  + F+    +  E+     AKASAWYHVTYH +
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES-----AKASAWYHVTYHSS 1055

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 296
            YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1056 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQE 1095


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 1222 bits (3161), Expect = 0.0
 Identities = 619/1000 (61%), Positives = 743/1000 (74%), Gaps = 2/1000 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ APKI+EK 
Sbjct: 125  VSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE 184

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P   RENF
Sbjct: 185  DQPINLLFGMM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-DFRENF 241

Query: 2929 PYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
              Y E     F +ESGSS+S N + LVP+V PP G +LP+E+LFK+N LVQN CL GP L
Sbjct: 242  ANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPAL 301

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            D   +  +NP+    A I+H LE+L+HL E CYEP +WL +QY +       P +P ISL
Sbjct: 302  DLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTISL 361

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+RS DLS
Sbjct: 362  DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS 421

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  DGLT+A
Sbjct: 422  PRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSA 478

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y+FSDG
Sbjct: 479  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 538

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS  FA++VAKKCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K+ S+N
Sbjct: 539  IGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 598

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
            T LDVL WSK QPC++NRQLITLLSTLGV+D +F+KKQ+EVVD+LD ILTDP+ A EAL 
Sbjct: 599  TKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALG 658

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GRSMMGCL
Sbjct: 659  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 718

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPCLHPGD+
Sbjct: 719  DETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPCLHPGDV 762

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVL+AVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD ELIPPR  +PMD
Sbjct: 763  RVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMD 822

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C+ELAR
Sbjct: 823  YTPEPAQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 881

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
             FSVAVDFPKTGV A IP HLHVKEYPDFMEK DKP+Y S+ VIGKLFREVKE  P    
Sbjct: 882  KFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 941

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I SFT  VA KSYD DME DGFE+Y+D+A++ K  YDFKLGNLM+YYGIKTEAE      
Sbjct: 942  IKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGI 1001

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 SF +++DAE++G AV++L+KE  + F+    ++      + AKASAWYHVTYH +
Sbjct: 1002 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEEN------ESAKASAWYHVTYHSS 1055

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 296
            YWG+YNEG+ RDHFL F WCVYDKL+ IKK N+ RRQ  E
Sbjct: 1056 YWGLYNEGLNRDHFLIFAWCVYDKLVRIKKTNAGRRQRQE 1095


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score = 1221 bits (3158), Expect = 0.0
 Identities = 615/997 (61%), Positives = 743/997 (74%), Gaps = 2/997 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG G+RK+ F +     +Y+LE+ Y++IW I L  P+    KFL+IQV+ APKI+EK 
Sbjct: 124  VSFGTGMRKLHFSISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKE 183

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         D+F D  ++QW+R TDFT+S CIGQSS+ CLELP     P   RENF
Sbjct: 184  DQPVNLLFGML--DFFSDGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVP-DFRENF 240

Query: 2929 PYYKEDE-GQFCVESGSSFSHNL-DLVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
              Y E E G F +ESGSS+S +  +LVP+V PP G +LP+E+LFK+N LVQ+ C+ GP L
Sbjct: 241  ANYAEHEAGTFLIESGSSYSSDATNLVPVVDPPPGFDLPFEILFKVNALVQSACIPGPVL 300

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            D  F+  ++PQ    A I+H+LE+L++L ECCYEP +WL E Y ++   +  P +P ISL
Sbjct: 301  DLDFYQLLDPQKHERALIDHSLEKLFYLKECCYEPARWLREGYKEWTTKEKLPESPMISL 360

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVY+ RVQ+TP+++YF  PEV VSNRVLR+Y N ++NF+R+SFVDE+ EK+RS DLS
Sbjct: 361  DDGLVYMHRVQVTPTRIYFQGPEVNVSNRVLRHYSNYINNFLRISFVDEDLEKIRSMDLS 420

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR++    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  DGL+A 
Sbjct: 421  PRSTT---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLSAE 477

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y+FSDG
Sbjct: 478  IIRAWMGDFEHIRNVAKYAARLGQSFSSSRETLNVRTDEIEVIPDVEITYLGTRYVFSDG 537

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS+ FA++VAKKCG+  F PSAFQIRYGGYKGVVAVD  S  KLSLRKSM K+ S N
Sbjct: 538  IGKISSEFARRVAKKCGLTEFTPSAFQIRYGGYKGVVAVDRNSYKKLSLRKSMSKFESKN 597

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
            T LDVL WSK QPC+LNRQLITLLSTLGV+D++FEKKQ+EVVD+LD ILTDP+ A EAL 
Sbjct: 598  TKLDVLAWSKYQPCYLNRQLITLLSTLGVKDYVFEKKQREVVDKLDAILTDPLEAHEALG 657

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +M+PGEN  +LKE++LCGYKPDAEPFLSMMLQ FRASKL ELR +SRI+I  GRSMMGCL
Sbjct: 658  LMAPGENTKILKELILCGYKPDAEPFLSMMLQNFRASKLLELRTKSRIFIHGGRSMMGCL 717

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DETRTLEYGQV VQFS                   +      + G V+VAKNPCLHPGD+
Sbjct: 718  DETRTLEYGQVVVQFS-----------------HPTRPGCQYITGPVVVAKNPCLHPGDV 760

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVLQAV V  L HMVDCV+FPQKG+RPHPNECSGSDLDGD+YFV WD ELIPP   +PMD
Sbjct: 761  RVLQAVYVSALSHMVDCVIFPQKGLRPHPNECSGSDLDGDIYFVCWDPELIPPETSEPMD 820

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTP  + + LDHDVTIE+I+EYFTNY++NDSLG+IANAHTAFADKE   A S  C+ELAR
Sbjct: 821  YTPEPAQI-LDHDVTIEEIEEYFTNYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 879

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
             FS+AVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE  P    
Sbjct: 880  KFSIAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 939

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I SFT  VA K+YD DME  GFE+Y+D+A+Y KG YD+KLGNLM+YYGIKTEAE      
Sbjct: 940  IKSFTLDVASKTYDQDMEVYGFEEYIDEAFYHKGNYDYKLGNLMDYYGIKTEAEVLSGGI 999

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 SF +++D E++G AV+SL+KEA +WF+   +   E   +  AKASAWYHVTYHP+
Sbjct: 1000 MRMSKSFTKRRDGESIGRAVRSLRKEALSWFN---AAEKEEDFDVSAKASAWYHVTYHPS 1056

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQ 305
            YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ
Sbjct: 1057 YWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQ 1093


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 618/1000 (61%), Positives = 739/1000 (73%), Gaps = 2/1000 (0%)
 Frame = -3

Query: 3289 VNFGFGLRKVEFLLMHCGVEYKLEISYKSIWAIQLRRPRNLRRKFLLIQVLAAPKIYEKP 3110
            V+FG G+RK+ F       +Y+LE+SY++IW I L  P+    KFL+IQV+ APKI+EK 
Sbjct: 124  VSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE 183

Query: 3109 QXXXXXXXXXXXSDYFKDEGNDQWVRATDFTNSYCIGQSSAICLELPYSCEFPPQIRENF 2930
                         D++ D  ++QW+R TDFT+S CIGQS+A CLELP     P   RENF
Sbjct: 184  DQPINLLFGIM--DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-DFRENF 240

Query: 2929 PYYKEDEGQ-FCVESGSSFSHNLD-LVPIVGPPRGIELPYEVLFKINLLVQNGCLAGPTL 2756
              Y E     F +ESGSS+S N + LVP+V PP G  LP+E+LFK+N LVQN CL+GP L
Sbjct: 241  ANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPAL 300

Query: 2755 DAPFFASVNPQFIPSAYIEHALERLYHLNECCYEPVKWLDEQYTKYRQSDHFPNAPGISL 2576
            D  F+  +N +    A I+H LE+L+HL ECCYEP  WL ++Y K+      P +P ISL
Sbjct: 301  DLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL 360

Query: 2575 GDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRNYHNAVDNFIRVSFVDEEGEKLRSTDLS 2396
             DGLVY+ RVQ+TP++VYF  PEV VSNRVLR+Y   ++NF+RVSFVDE+ EK+RS DLS
Sbjct: 361  DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS 420

Query: 2395 PRTSKTEDRKHTAIYRRILSTLRNGIVIGDKKFDLLAFSSSQLRESSAWMFASKDGLTAA 2216
            PR+S    ++ T +Y RI S LR+GIVIGDKKF+ LAFSSSQLRE+SAWMFA  D +TAA
Sbjct: 421  PRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAA 477

Query: 2215 CIREWMGDFREIRNVAKYAARLGQSFSSSKETLTVXXXXXXXXXXXXXXRSGVKYIFSDG 2036
             IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V                G +Y+FSDG
Sbjct: 478  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 537

Query: 2035 IGKISTSFAQKVAKKCGIDHFVPSAFQIRYGGYKGVVAVDPTSVTKLSLRKSMFKYTSDN 1856
            IGKIS  FA+KVA+KCG+  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM K+ S+N
Sbjct: 538  IGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 597

Query: 1855 TGLDVLNWSKSQPCFLNRQLITLLSTLGVRDHIFEKKQKEVVDQLDMILTDPVRAQEALD 1676
            T LDVL WSK QPC++NRQLITLLSTLGV D +FEKKQ+EVVD+LD ILT P+ A EAL 
Sbjct: 598  TKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALG 657

Query: 1675 VMSPGENVNVLKEMLLCGYKPDAEPFLSMMLQTFRASKLQELRNRSRIYIPNGRSMMGCL 1496
            +M+PGEN N+LK ++LCGYKPDAEPFLSMMLQ FRASKL ELR ++RI+I  GRSMMGCL
Sbjct: 658  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 717

Query: 1495 DETRTLEYGQVFVQFSGFGTKQVSDNMLVTYRGKRSNQRNYIVEGKVIVAKNPCLHPGDL 1316
            DETRTLEYGQV VQ+        SD M           R +I+ G V+VAKNPCLH GD+
Sbjct: 718  DETRTLEYGQVVVQY--------SDPM--------RPGRRFIITGPVVVAKNPCLHSGDV 761

Query: 1315 RVLQAVNVPDLHHMVDCVVFPQKGIRPHPNECSGSDLDGDVYFVSWDNELIPPRQIQPMD 1136
            RVLQAVNVP L+HMVDCVVFPQKG+RPHPNECSGSDLDGD+YFV WD EL+PPR  +PMD
Sbjct: 762  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 821

Query: 1135 YTPATSAVRLDHDVTIEDIQEYFTNYMLNDSLGVIANAHTAFADKESGMAESGACMELAR 956
            YTP  + + LDHDVTIE+++EYF NY++NDSLG+IANAHTAFADKE   A S  C+ELA+
Sbjct: 822  YTPEPTQI-LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 880

Query: 955  LFSVAVDFPKTGVPAAIPPHLHVKEYPDFMEKLDKPSYPSQRVIGKLFREVKEITPQTNC 776
             FS AVDFPKTGV A IP HL+VKEYPDFMEK DKP+Y S+ VIGKLFREVKE  P    
Sbjct: 881  KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 940

Query: 775  IPSFTWAVAKKSYDSDMEFDGFEDYLDDAYYLKGKYDFKLGNLMNYYGIKTEAEXXXXXX 596
            I SFT  VA KSYD DME DGFE+Y+D+A+Y K  YDFKLGNLM+YYGIKTEAE      
Sbjct: 941  IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1000

Query: 595  XXXXXSFDRKKDAEAVGLAVKSLKKEARNWFDDKGSKSGETAGEKYAKASAWYHVTYHPN 416
                 SF +++DAE++G AV++L+KE  + F+    +  E+     AKASAWYHVTYH +
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES-----AKASAWYHVTYHSS 1055

Query: 415  YWGIYNEGMKRDHFLSFPWCVYDKLIHIKKNNSKRRQLDE 296
            YWG+YNEG+ RDHFLSF WCVYDKL+ IKK N  RRQ  E
Sbjct: 1056 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQE 1095