BLASTX nr result
ID: Sinomenium21_contig00010873
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00010873
(541 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ... 110 2e-22
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I... 108 6e-22
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I... 107 1e-21
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ... 107 2e-21
ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I... 106 4e-21
gb|EYU26259.1| hypothetical protein MIMGU_mgv1a017602mg [Mimulus... 105 5e-21
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ... 105 7e-21
ref|XP_007023679.1| DNA directed RNA polymerase, 7 kDa subunit [... 104 2e-20
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr... 103 2e-20
ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, I... 103 2e-20
ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group] g... 103 2e-20
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp.... 103 3e-20
ref|XP_004492394.1| PREDICTED: DNA-directed RNA polymerases I, I... 102 8e-20
ref|XP_007212294.1| hypothetical protein PRUPE_ppa013939mg [Prun... 101 1e-19
ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE1... 101 1e-19
gb|AFK41236.1| unknown [Medicago truncatula] 101 1e-19
ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutr... 101 1e-19
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part... 101 1e-19
gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK257... 101 1e-19
gb|ABK21111.1| unknown [Picea sitchensis] 101 1e-19
>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 12 [Glycine max]
gi|567912183|ref|XP_006448405.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|593704333|ref|XP_007152540.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
gi|557551016|gb|ESR61645.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|561025849|gb|ESW24534.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
Length = 51
Score = 110 bits (276), Expect = 2e-22
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 [Vitis
vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
product [Vitis vinifera]
Length = 51
Score = 108 bits (271), Expect = 6e-22
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Cucumis sativus]
Length = 51
Score = 107 bits (268), Expect = 1e-21
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 107 bits (267), Expect = 2e-21
Identities = 54/78 (69%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 26 LSSRPKLHNPKPRRAPLSSSLFLLSKMD-SQPEPVSYICGDCGMENTLKPGDVIQCRECG 202
L R L P R S MD QPEPVSY+CGDCG ENTLKPGDVIQCRECG
Sbjct: 23 LGLRRNLQTPTSLRTTCRRKTLERSTMDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECG 82
Query: 203 YRILYKKRTRRIVQYEAR 256
YRILYKKRTRRIVQYEAR
Sbjct: 83 YRILYKKRTRRIVQYEAR 100
>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Solanum lycopersicum]
Length = 52
Score = 106 bits (264), Expect = 4e-21
Identities = 50/52 (96%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 MDSQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MDSQP EPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gb|EYU26259.1| hypothetical protein MIMGU_mgv1a017602mg [Mimulus guttatus]
gi|604334021|gb|EYU38219.1| hypothetical protein
MIMGU_mgv1a017594mg [Mimulus guttatus]
Length = 51
Score = 105 bits (263), Expect = 5e-21
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula] gi|355484947|gb|AES66150.1|
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Medicago truncatula]
Length = 121
Score = 105 bits (262), Expect = 7e-21
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +2
Query: 77 SSSLFLLSKMDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
S F++ MD PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 5 SKECFIVGVMDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 44 LHNPKPRR-APLSSSLFLLSKMDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYK 220
L+ + RR + L L MD P+P+ Y+CGDCG E L V+QC C Y+ILYK
Sbjct: 50 LYKKRTRRIVQYEARLLLKPDMDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYK 109
Query: 221 KRTRRIVQYEAR 256
KRT R++QYEAR
Sbjct: 110 KRTHRVLQYEAR 121
>ref|XP_007023679.1| DNA directed RNA polymerase, 7 kDa subunit [Theobroma cacao]
gi|508779045|gb|EOY26301.1| DNA directed RNA polymerase,
7 kDa subunit [Theobroma cacao]
Length = 51
Score = 104 bits (259), Expect = 2e-20
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPV+YICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131670|ref|XP_006392764.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131674|ref|XP_006392765.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089341|gb|ESQ30049.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089342|gb|ESQ30050.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089343|gb|ESQ30051.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
Length = 51
Score = 103 bits (258), Expect = 2e-20
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDPQPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Vitis vinifera]
gi|298204812|emb|CBI25645.3| unnamed protein product
[Vitis vinifera]
Length = 51
Score = 103 bits (258), Expect = 2e-20
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MDSQPEPVSYICGDCG ENTLK GDVIQCRECGY ILYKKRTRRIVQYEAR
Sbjct: 1 MDSQPEPVSYICGDCGQENTLKLGDVIQCRECGYCILYKKRTRRIVQYEAR 51
>ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
sativa Japonica Group] gi|615276275|ref|NP_001278509.1|
LOC100285004 [Zea mays] gi|242048352|ref|XP_002461922.1|
hypothetical protein SORBIDRAFT_02g010660 [Sorghum
bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Setaria italica] gi|195609858|gb|ACG26759.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
hypothetical protein OsI_02267 [Oryza sativa Indica
Group] gi|222618595|gb|EEE54727.1| hypothetical protein
OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein
SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein
SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
Japonica Group] gi|255676033|dbj|BAH92949.1|
Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 103 bits (258), Expect = 2e-20
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 113 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
QPEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 5 QPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 103 bits (257), Expect = 3e-20
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2
Query: 110 SQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
+QPEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 4 AQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52
>ref|XP_004492394.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cicer arietinum]
Length = 51
Score = 102 bits (253), Expect = 8e-20
Identities = 44/51 (86%), Positives = 49/51 (96%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD QPEPVSY+CGDCG+ENT+K GDVI+CR+CGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYLCGDCGVENTIKSGDVIRCRDCGYRILYKKRTRRIVQYEAR 51
>ref|XP_007212294.1| hypothetical protein PRUPE_ppa013939mg [Prunus persica]
gi|462408159|gb|EMJ13493.1| hypothetical protein
PRUPE_ppa013939mg [Prunus persica]
Length = 95
Score = 101 bits (252), Expect = 1e-19
Identities = 54/75 (72%), Positives = 56/75 (74%), Gaps = 4/75 (5%)
Frame = +2
Query: 44 LHNPKPRRAPLSSSLFLL----SKMDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRI 211
L +P P P SSS L + MD QPEPV YICGDCGME LKP DVIQCRECGYRI
Sbjct: 24 LRSPPP---PTSSSASLGYCGGNLMDPQPEPVYYICGDCGMEIPLKPNDVIQCRECGYRI 80
Query: 212 LYKKRTRRIVQYEAR 256
LYKKRTRRIVQYEAR
Sbjct: 81 LYKKRTRRIVQYEAR 95
>ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE12 [Arabidopsis
thaliana] gi|75171496|sp|Q9FLM8.1|NRPBC_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
12; AltName: Full=DNA-directed RNA Polymerase II subunit
K gi|9759147|dbj|BAB09703.1| unnamed protein product
[Arabidopsis thaliana] gi|15028303|gb|AAK76628.1|
unknown protein [Arabidopsis thaliana]
gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis
thaliana] gi|21618239|gb|AAM67289.1| DNA directed RNA
polymerase II polypeptide K [Arabidopsis thaliana]
gi|332007242|gb|AED94625.1| DNA-directed RNA polymerase
NRPB12/NRPD12/NRPE12 [Arabidopsis thaliana]
Length = 51
Score = 101 bits (252), Expect = 1e-19
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>gb|AFK41236.1| unknown [Medicago truncatula]
Length = 51
Score = 101 bits (252), Expect = 1e-19
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 51
>ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutrema salsugineum]
gi|557106544|gb|ESQ46859.1| hypothetical protein
EUTSA_v10028022mg [Eutrema salsugineum]
Length = 51
Score = 101 bits (251), Expect = 1e-19
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = +2
Query: 104 MDSQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
MD PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDPLPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
gi|482553592|gb|EOA17785.1| hypothetical protein
CARUB_v10006178mg, partial [Capsella rubella]
Length = 68
Score = 101 bits (251), Expect = 1e-19
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = +2
Query: 116 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
PEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 22 PEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 68
>gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK25799.1| unknown
[Picea sitchensis] gi|148909877|gb|ABR18025.1| unknown
[Picea sitchensis] gi|224284970|gb|ACN40214.1| unknown
[Picea sitchensis] gi|224286085|gb|ACN40753.1| unknown
[Picea sitchensis]
Length = 53
Score = 101 bits (251), Expect = 1e-19
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +2
Query: 116 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
PEPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 101 bits (251), Expect = 1e-19
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +2
Query: 116 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 256
PEPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53