BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00010642
         (911 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu...   234   3e-59
emb|CBI30093.3| unnamed protein product [Vitis vinifera]              231   3e-58
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I...   231   3e-58
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I...   231   4e-58
emb|CBI35146.3| unnamed protein product [Vitis vinifera]              224   4e-56
ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phas...   224   5e-56
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr...   224   5e-56
ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, I...   224   5e-56
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri...   224   5e-56
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun...   219   9e-55
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin...   218   3e-54
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I...   218   3e-54
ref|XP_007202529.1| hypothetical protein PRUPE_ppa010980mg [Prun...   216   8e-54
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I...   216   8e-54
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ...   216   8e-54
ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit famil...   215   2e-53
gb|AFK43162.1| unknown [Medicago truncatula]                          214   4e-53
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I...   212   2e-52
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub...   211   3e-52
ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ri...   208   2e-51

>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
           gi|550320761|gb|EEF05018.2| hypothetical protein
           POPTR_0016s03800g [Populus trichocarpa]
          Length = 243

 Score =  234 bits (598), Expect = 3e-59
 Identities = 118/224 (52%), Positives = 153/224 (68%)
 Frame = +2

Query: 35  RERRESIMSMENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLAD 214
           +E+      ME+ GRCL  +VD+GS ES RYYLSR T  EML+DRGY VP S++ +SL D
Sbjct: 19  QEKENGSFGMESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQD 78

Query: 215 FRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLI 394
           FR  +G  PDIE L+      SDPSK++LVIF  + V+K+ ++R I  Q+ +  S+  LI
Sbjct: 79  FRGVYGQNPDIELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLI 138

Query: 395 LVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXX 574
           LVLQ  IT QA +AL LF+ K+EIFQITDLLVN+TKHIL PKH                 
Sbjct: 139 LVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSI 198

Query: 575 GDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            +KQ+PR+L+ DA++RYYGLE+GQV+K+T  G +TG HVTYRCV
Sbjct: 199 EEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCV 242


>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score =  231 bits (589), Expect = 3e-58
 Identities = 117/210 (55%), Positives = 146/210 (69%)
 Frame = +2

Query: 77  RCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIERL 256
           RCL  +VD+G +ES RYYL+R T  EMLRDRGY +P  D+ +SL DFRS +  KPD +RL
Sbjct: 120 RCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRL 179

Query: 257 RICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQA 436
           RI   L SDPSKKILVIF   DV+K++ +R I +Q+    S+ +LILVLQ  IT QA +A
Sbjct: 180 RISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKA 239

Query: 437 LGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDAV 616
           + LF  +VE FQITDLLVN+TKH+L PKH                  +KQ+PRML+ DA+
Sbjct: 240 VDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAI 299

Query: 617 ARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           ARYYGLEKGQV+K+   G +TG HVTYRCV
Sbjct: 300 ARYYGLEKGQVVKVIYNGEITGSHVTYRCV 329


>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 229

 Score =  231 bits (589), Expect = 3e-58
 Identities = 117/210 (55%), Positives = 146/210 (69%)
 Frame = +2

Query: 77  RCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIERL 256
           RCL  +VD+G +ES RYYL+R T  EMLRDRGY +P  D+ +SL DFRS +  KPD +RL
Sbjct: 19  RCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRL 78

Query: 257 RICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQA 436
           RI   L SDPSKKILVIF   DV+K++ +R I +Q+    S+ +LILVLQ  IT QA +A
Sbjct: 79  RISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKA 138

Query: 437 LGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDAV 616
           + LF  +VE FQITDLLVN+TKH+L PKH                  +KQ+PRML+ DA+
Sbjct: 139 VDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAI 198

Query: 617 ARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           ARYYGLEKGQV+K+   G +TG HVTYRCV
Sbjct: 199 ARYYGLEKGQVVKVIYNGEITGSHVTYRCV 228


>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 244

 Score =  231 bits (588), Expect = 4e-58
 Identities = 118/228 (51%), Positives = 154/228 (67%), Gaps = 11/228 (4%)
 Frame = +2

Query: 56  MSMENG-----------GRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQL 202
           M +ENG           G+CL   +DDGSVES RYYLSR TT EML+DRGY +P S++QL
Sbjct: 16  MEIENGDALPQVQSQEQGKCLITKIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQL 75

Query: 203 SLADFRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSI 382
           SL +FR T G  PD++RLR      ++PSK+ILVIF+   ++K++VVR I  Q+    ++
Sbjct: 76  SLHEFRQTHGHSPDVDRLRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTL 135

Query: 383 HRLILVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXX 562
             LIL++Q +IT QA +A+ L   KVEIFQITDLLVN+TKH+L PKH             
Sbjct: 136 TGLILIVQSQITSQALKAVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLK 195

Query: 563 XXXXGDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
                +KQ+PRML+TDA+ARYYGLE+GQV+K+T  G +T  HVTYRCV
Sbjct: 196 KYNIQEKQLPRMLQTDAIARYYGLERGQVVKVTYTGEITQMHVTYRCV 243


>emb|CBI35146.3| unnamed protein product [Vitis vinifera]
          Length = 731

 Score =  224 bits (571), Expect = 4e-56
 Identities = 115/222 (51%), Positives = 148/222 (66%)
 Frame = +2

Query: 41   RRESIMSMENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFR 220
            + ES       G C+   ++ GS+ES RYYLSR T F+ML DRGY+VP S+L  SL+DFR
Sbjct: 510  KMESQAGSHGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFR 569

Query: 221  STFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILV 400
            ++FG  PD  RLRICLPL+S PSKKILV+F   D ++ +V+R IF Q+N    +HRLILV
Sbjct: 570  ASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQIN-REGLHRLILV 628

Query: 401  LQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGD 580
            LQ K+   AR+ +  + +KVE FQIT+LL+N+TKH+ +PKH                  D
Sbjct: 629  LQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLED 688

Query: 581  KQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            KQ P M + DA+ARYYGLEKGQV+KIT  G +T   VTYRCV
Sbjct: 689  KQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 730


>ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
           gi|561035580|gb|ESW34110.1| hypothetical protein
           PHAVU_001G125200g [Phaseolus vulgaris]
          Length = 242

 Score =  224 bits (570), Expect = 5e-56
 Identities = 109/209 (52%), Positives = 147/209 (70%)
 Frame = +2

Query: 80  CLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIERLR 259
           CL +++DDG+VES RYYLSR TT EML+DRGY +P +++ LSL+ FR   G  PD +RLR
Sbjct: 33  CLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMHGHSPDPDRLR 92

Query: 260 ICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQAL 439
           + L   ++PSK+ILVIF    V+K++ +R I  Q+    ++  LIL+++  +T QA +A+
Sbjct: 93  LSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQALKAV 152

Query: 440 GLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDAVA 619
           GLF  KVEIFQITDLLVN+TKH+L PKH                  +KQ+PRML+TDA+A
Sbjct: 153 GLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQTDAIA 212

Query: 620 RYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           RYYGLE+GQV+K+T  G +T  HVTYRCV
Sbjct: 213 RYYGLERGQVVKVTYSGEITQMHVTYRCV 241


>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
           gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
           RNA polymerase V subunit 5A-like isoform X1 [Citrus
           sinensis] gi|557544341|gb|ESR55319.1| hypothetical
           protein CICLE_v10021999mg [Citrus clementina]
          Length = 236

 Score =  224 bits (570), Expect = 5e-56
 Identities = 115/228 (50%), Positives = 155/228 (67%), Gaps = 8/228 (3%)
 Frame = +2

Query: 47  ESIMSMENGG--------RCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQL 202
           +S M ME G          CL  +VD+GS +S RYYLSR T  EML+DRGY V  S++ L
Sbjct: 8   DSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINL 67

Query: 203 SLADFRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSI 382
           S+ DFR+ +G  PD++RLRI +   SDPSK+ILV+F    ++K++V+R I SQ+    ++
Sbjct: 68  SVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127

Query: 383 HRLILVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXX 562
             LIL+LQ +IT QA +A+GLF+ KVE+FQITDLLVN+TKH+L PKH             
Sbjct: 128 TGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187

Query: 563 XXXXGDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
                +KQ+PRML+ DA+A+YYGLE+GQV+K+T  G +T  HVTYRCV
Sbjct: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235


>ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 221

 Score =  224 bits (570), Expect = 5e-56
 Identities = 115/220 (52%), Positives = 147/220 (66%)
 Frame = +2

Query: 47  ESIMSMENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRST 226
           ES       G C+   ++ GS+ES RYYLSR T F+ML DRGY+VP S+L  SL+DFR++
Sbjct: 2   ESQAGSHGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRAS 61

Query: 227 FGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQ 406
           FG  PD  RLRICLPL+S PSKKILV+F   D ++ +V+R IF Q+N    +HRLILVLQ
Sbjct: 62  FGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQIN-REGLHRLILVLQ 120

Query: 407 GKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQ 586
            K+   AR+ +  + +KVE FQIT+LL+N+TKH+ +PKH                  DKQ
Sbjct: 121 SKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQ 180

Query: 587 IPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            P M + DA+ARYYGLEKGQV+KIT  G +T   VTYRCV
Sbjct: 181 FPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220


>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 238

 Score =  224 bits (570), Expect = 5e-56
 Identities = 112/216 (51%), Positives = 146/216 (67%)
 Frame = +2

Query: 59  SMENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSK 238
           +ME  G+C   + DDG+ E+ RYYLSR T  EMLRDRGY VP S++ LSL +FR+  G  
Sbjct: 22  NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81

Query: 239 PDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKIT 418
           PDI+RL+      SDPSK++LV+F    ++K+S +R I  Q+    S+  LILVLQ +IT
Sbjct: 82  PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141

Query: 419 PQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRM 598
            QA +A+ LF+ KVE+FQITDLLVN+TKH+L PKH                  +KQ+PR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

Query: 599 LETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           L  DA+ARYYGLEKGQV+K+T  G +T  HVTYRCV
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCV 237


>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 231

 Score =  219 bits (559), Expect = 9e-55
 Identities = 114/214 (53%), Positives = 145/214 (67%)
 Frame = +2

Query: 65  ENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPD 244
           E  G CL   +D GSVES RY+LSR T  EML+DRGY VP SD+ LSL DFR  +G  PD
Sbjct: 17  ETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPD 76

Query: 245 IERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQ 424
           ++RLR  +  LSDPSK+ILVIF    V+K++ VRGI  Q+   +++  LILVLQ ++T Q
Sbjct: 77  VDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQ 136

Query: 425 ARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLE 604
           A++A+ L   KVEIFQITDLL+N+TKH+L PKH                   KQ+PRM +
Sbjct: 137 AQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSK 196

Query: 605 TDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            DA+ARYYGLEKGQV+KI   G +T  ++TYRCV
Sbjct: 197 NDAIARYYGLEKGQVVKIIYSGGITDSYITYRCV 230


>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
           gi|255627335|gb|ACU14012.1| unknown [Glycine max]
          Length = 237

 Score =  218 bits (555), Expect = 3e-54
 Identities = 111/214 (51%), Positives = 145/214 (67%)
 Frame = +2

Query: 65  ENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPD 244
           E    CL ++VD+GSVES RYYLSR TT EML+DRGY +P  ++ LSL+DFR   G  PD
Sbjct: 23  EQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPD 82

Query: 245 IERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQ 424
            +RLR+ L   ++ SK+ILVIF    V+K++ +R    Q+    ++  LIL+++  IT Q
Sbjct: 83  PDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQ 142

Query: 425 ARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLE 604
           A +A+ LF  KVEIFQITDLLVN+TKH+L PKH                  +KQ+PRML+
Sbjct: 143 ALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQ 202

Query: 605 TDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           TDA+ARYYGLE+GQV+K+T  G VT  HVTYRCV
Sbjct: 203 TDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCV 236


>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
          Length = 225

 Score =  218 bits (554), Expect = 3e-54
 Identities = 113/224 (50%), Positives = 148/224 (66%), Gaps = 7/224 (3%)
 Frame = +2

Query: 56  MSMENG-------GRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLAD 214
           M  ENG       G CL  +VDDGS ES RY+LSR T  EMLRDRGY VP S++ LSL D
Sbjct: 1   MEGENGNGDEVVAGPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQD 60

Query: 215 FRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLI 394
           FRS  G  PD +RL       SDPS+++LVI+    ++K++V+RG+ SQ+    ++  LI
Sbjct: 61  FRSLHGQNPDADRLCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLI 120

Query: 395 LVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXX 574
           L+LQG+IT QA + L L+  KVEIFQITDLLVN+TKH+L P+H                 
Sbjct: 121 LILQGQITSQALKTLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNI 180

Query: 575 GDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            +KQ+PR+ + DA+A+YYGLE+GQV+K+T  G +T  HVTYRCV
Sbjct: 181 EEKQLPRISQKDAIAKYYGLERGQVVKVTYSGDITKGHVTYRCV 224


>ref|XP_007202529.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
           gi|462398060|gb|EMJ03728.1| hypothetical protein
           PRUPE_ppa010980mg [Prunus persica]
          Length = 228

 Score =  216 bits (551), Expect = 8e-54
 Identities = 109/232 (46%), Positives = 147/232 (63%)
 Frame = +2

Query: 11  MEGQKRTKRERRESIMSMENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDS 190
           MEG      +    I+     G CL  +VDDGS ES RYYLSR T  EM+RDRGY VP S
Sbjct: 1   MEGDAEANGDANGEIL-----GPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSS 55

Query: 191 DLQLSLADFRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNE 370
           ++ LSL DFR+  G  PD+ERLR      +DPS +I+VI+    ++K++V+RG+ SQ+  
Sbjct: 56  EIDLSLQDFRALHGQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIAN 115

Query: 371 NHSIHRLILVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXX 550
             +++ LIL+ Q +IT QA + + L+  K EIFQITDLLVN+TKH+L PKH         
Sbjct: 116 KDTLNGLILITQNQITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQ 175

Query: 551 XXXXXXXXGDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
                    + Q+PR+   DA+A+YYGLEKGQV+K+T  G +T  HVTYRC+
Sbjct: 176 KLLKKYNIEENQLPRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCI 227


>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
           gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           [Cucumis sativus]
          Length = 227

 Score =  216 bits (551), Expect = 8e-54
 Identities = 106/211 (50%), Positives = 140/211 (66%)
 Frame = +2

Query: 74  GRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIER 253
           G CL  ++DDG+ ES RY+LSR T  EML+DRGY +   ++  SL  FR TFG  PD++R
Sbjct: 16  GTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDR 75

Query: 254 LRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQ 433
           L++     SDPSK++LV+F     +K++ +R I  Q+    S+H LIL++Q +IT QA +
Sbjct: 76  LKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMK 135

Query: 434 ALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDA 613
           A+ LF  KVEIFQITDLLVN+TKH L P H                  +KQ+PRML TDA
Sbjct: 136 AVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDA 195

Query: 614 VARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           +ARYYGLEKGQV+K+T  G +T  H+TYRCV
Sbjct: 196 IARYYGLEKGQVVKVTYDGDMTRAHITYRCV 226


>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
           polymerase subunit, RPB5; RNA polymerase Rpb5,
           N-terminal [Medicago truncatula]
           gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
           I, II, and III subunit RPABC1 [Medicago truncatula]
          Length = 248

 Score =  216 bits (551), Expect = 8e-54
 Identities = 115/241 (47%), Positives = 153/241 (63%), Gaps = 11/241 (4%)
 Frame = +2

Query: 17  GQKRTKRERRESIMSMENGG-----------RCLCRWVDDGSVESKRYYLSRFTTFEMLR 163
           GQ  T  E   + M +ENG            +CL    D+GS+ES RYYLSR T  EML+
Sbjct: 8   GQNGTT-ETAITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLK 66

Query: 164 DRGYDVPDSDLQLSLADFRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVV 343
           DRGY +P  ++QLSL DFR   G  PD++RLR+     ++PSK+ILV+F+   ++K++ V
Sbjct: 67  DRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGV 126

Query: 344 RGIFSQVNENHSIHRLILVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKH 523
           R I  Q+    S+  LIL++Q +IT QA +A+ L   KVEIFQITDLLVN TKH+L PKH
Sbjct: 127 RDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKH 186

Query: 524 XXXXXXXXXXXXXXXXXGDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRC 703
                             +KQ+PRML+TDA+ARYYGL++GQV+K+T  G +T  HVTYRC
Sbjct: 187 QVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRC 246

Query: 704 V 706
           V
Sbjct: 247 V 247


>ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508717149|gb|EOY09046.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 228

 Score =  215 bits (548), Expect = 2e-53
 Identities = 112/211 (53%), Positives = 141/211 (66%)
 Frame = +2

Query: 74  GRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIER 253
           G+CL   VDDGS ES RYYLSR T  EMLRDRGY VP S++ LSL +FR+ +G  PD +R
Sbjct: 17  GKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEFRAIYGQSPDFDR 76

Query: 254 LRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQ 433
           LR+     +DPSK+ILV+F    ++K+S +R I   +    S+  LILVLQ  IT QA +
Sbjct: 77  LRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLILVLQNHITNQALK 136

Query: 434 ALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDA 613
           AL LF  KVEIFQITDLLVN+TKH+L PKH                  +KQ+PR+L+ DA
Sbjct: 137 ALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIEEKQLPRLLKKDA 196

Query: 614 VARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           +ARYYG E+GQV+K+   G +T  HVTYRCV
Sbjct: 197 IARYYGYERGQVVKVMYDGEITQSHVTYRCV 227


>gb|AFK43162.1| unknown [Medicago truncatula]
          Length = 248

 Score =  214 bits (545), Expect = 4e-53
 Identities = 114/241 (47%), Positives = 152/241 (63%), Gaps = 11/241 (4%)
 Frame = +2

Query: 17  GQKRTKRERRESIMSMENGG-----------RCLCRWVDDGSVESKRYYLSRFTTFEMLR 163
           GQ  T  E   + M +ENG            +CL    D+GS+ES RYYLSR T  EML+
Sbjct: 8   GQNGTT-ETAITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLK 66

Query: 164 DRGYDVPDSDLQLSLADFRSTFGSKPDIERLRICLPLLSDPSKKILVIFTAVDVLKLSVV 343
           DRGY +P  ++QLSL DFR   G  PD++RLR+     ++PSK+ILV+F+   ++K++ V
Sbjct: 67  DRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGV 126

Query: 344 RGIFSQVNENHSIHRLILVLQGKITPQARQALGLFRVKVEIFQITDLLVNVTKHILMPKH 523
           R I  Q+    S+  LIL++Q +IT QA +A+ L   KVEI QITDLLVN TKH+L PKH
Sbjct: 127 RDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKH 186

Query: 524 XXXXXXXXXXXXXXXXXGDKQIPRMLETDAVARYYGLEKGQVLKITSVGVVTGPHVTYRC 703
                             +KQ+PRML+TDA+ARYYGL++GQV+K+T  G +T  HVTYRC
Sbjct: 187 QVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRC 246

Query: 704 V 706
           V
Sbjct: 247 V 247


>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Solanum lycopersicum]
          Length = 227

 Score =  212 bits (539), Expect = 2e-52
 Identities = 104/214 (48%), Positives = 145/214 (67%)
 Frame = +2

Query: 65  ENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPD 244
           EN G CL  +VDDG+VES RY+L+R T  EML+DRG+ +P+S++  +L +FR  +G  PD
Sbjct: 13  ENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPD 72

Query: 245 IERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQ 424
           +ERLR+     +D + K+LVIF   + +K++V+R I +Q+    S+ RLILV+Q ++T  
Sbjct: 73  VERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNP 132

Query: 425 ARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLE 604
           A +A+ LF  KVEIFQITDLLVN+TKH+L P+H                  +KQ+PRM +
Sbjct: 133 ALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQ 192

Query: 605 TDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            DA+ARYYGLEKGQV+K+T    +   HVTYRCV
Sbjct: 193 KDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 226


>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
           tuberosum]
          Length = 227

 Score =  211 bits (537), Expect = 3e-52
 Identities = 103/214 (48%), Positives = 145/214 (67%)
 Frame = +2

Query: 65  ENGGRCLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPD 244
           +N G CL  +VDDG+VES RY+L+R T  EML+DRG+ +P+S++  +L +FR  +G  PD
Sbjct: 13  DNLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPD 72

Query: 245 IERLRICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQ 424
           +ERLR+     +D + K+LVIF   + +K++V+R I +Q+    S+ RLILV+Q ++T  
Sbjct: 73  VERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNP 132

Query: 425 ARQALGLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLE 604
           A +A+ LF  KVEIFQITDLLVN+TKH+L P+H                  +KQ+PRM +
Sbjct: 133 AMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQ 192

Query: 605 TDAVARYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
            DA+ARYYGLEKGQV+K+T    +   HVTYRCV
Sbjct: 193 KDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 226


>ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 239

 Score =  208 bits (530), Expect = 2e-51
 Identities = 107/209 (51%), Positives = 138/209 (66%)
 Frame = +2

Query: 80  CLCRWVDDGSVESKRYYLSRFTTFEMLRDRGYDVPDSDLQLSLADFRSTFGSKPDIERLR 259
           CL ++V+  S+ES+RYYLSR T  EMLRDRGYDV DS+L  S  +F S FG  PDI +LR
Sbjct: 30  CLTKFVEQASLESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLR 89

Query: 260 ICLPLLSDPSKKILVIFTAVDVLKLSVVRGIFSQVNENHSIHRLILVLQGKITPQARQAL 439
           I   L S P KK++V+F   + +KL+ +RG+  Q+    S++ LIL+LQ K+   AR+ L
Sbjct: 90  ISASLHSHPDKKMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKEL 149

Query: 440 GLFRVKVEIFQITDLLVNVTKHILMPKHXXXXXXXXXXXXXXXXXGDKQIPRMLETDAVA 619
           G F  KVEIF I+DLLVN+TKH+L P+H                  DKQ+PRML TDA++
Sbjct: 150 GQFPSKVEIFHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAIS 209

Query: 620 RYYGLEKGQVLKITSVGVVTGPHVTYRCV 706
           RYYG EKGQV+KIT  G +    VTYRCV
Sbjct: 210 RYYGFEKGQVVKITYSGGLVDSLVTYRCV 238