BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00010083
         (474 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   171   1e-40
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   167   2e-39
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       156   3e-36
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   150   1e-34
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      150   1e-34
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   150   2e-34
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   150   2e-34
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...   150   2e-34
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]       148   9e-34
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   147   1e-33
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      146   3e-33
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   145   4e-33
gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]       145   4e-33
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su...   145   4e-33
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   144   1e-32
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   144   1e-32
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   143   3e-32
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   142   4e-32
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   140   1e-31
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   140   2e-31

>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/162 (51%), Positives = 114/162 (70%), Gaps = 4/162 (2%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCT----ERISLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSL 307
           KG  PRAFA++QFTTA        R + I R++ YG SYL  R+MERDI P+PRV + SL
Sbjct: 41  KGRVPRAFAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSL 100

Query: 306 TGAALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQ 127
               L FGCQ+S  RF VLWK +DV+V FG G RK+ FL S+ +V YKLELSY++IWKI+
Sbjct: 101 DDVKLSFGCQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIE 160

Query: 126 LHHPEGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           LH P    T++L+IQ++GAPR+ +  + +S N+ +D ++NFF
Sbjct: 161 LHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFF 202


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  167 bits (422), Expect = 2e-39
 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459 RAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALHFG 283
           RA+A+VQFT +   E I  L N+ +YYG SYL  R+ME DI PKPR  + ++ G  LHFG
Sbjct: 45  RAYAIVQFTKSTDAELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFG 104

Query: 282 CQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEGLN 103
           CQVS+++FYVLW+  DV V FG G RK++FLLS+  V+Y+L+L Y++IW+I+LH P    
Sbjct: 105 CQVSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQT 164

Query: 102 TKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           +K+L+IQ+ GAPRI++K + SSG + E+ + N+F
Sbjct: 165 SKYLLIQLFGAPRIYEKDVRSSGLVFENPLLNYF 198


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  156 bits (394), Expect = 3e-36
 Identities = 72/159 (45%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGA 298
           K    R++A+VQF T +  E I  L N  ++YG SYL  R MERDI PKPR  + SL   
Sbjct: 41  KNGGSRSYAIVQFMTVETAELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNV 100

Query: 297 ALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHH 118
            LHFGCQ+S ++F  LW+  +V V+FG G R++ F L+Y  V+Y+L+L Y+++W+I+LH 
Sbjct: 101 TLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHR 160

Query: 117 PEGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           P G   K+L+IQ++GAPR+++K +  S ++LE+ ++N+F
Sbjct: 161 PRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPLFNYF 199


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  150 bits (380), Expect = 1e-34
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459 RAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALHFG 283
           R +A+VQFTT +  E+I SL N  ++YG SYL  R M+RDI P+PR  + ++    LHFG
Sbjct: 46  RKYAIVQFTTTRAAEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFG 105

Query: 282 CQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEGLN 103
            Q S ++F  +W G +V V FG G RK+ F LS+   +YKL L +++IW+I+LH P G  
Sbjct: 106 YQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQT 165

Query: 102 TKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
            K+L+IQ+ GAPRI+++ + SS N+ ED + N+F
Sbjct: 166 VKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYF 199


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  150 bits (380), Expect = 1e-34
 Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459 RAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALHFG 283
           RAFA+VQFT +     I  L N+ +YYG SYL  R+ME DI PKPRV + ++    ++FG
Sbjct: 45  RAFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFG 104

Query: 282 CQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEGLN 103
           CQVS+++FYVLWK  +V + FG G RK+EFLLSY    YKLEL Y++IW+I+L  P    
Sbjct: 105 CQVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQT 164

Query: 102 TKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           +K L+IQ+ GAPRI++K + +S  + +D + N+F
Sbjct: 165 SKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYF 198


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  150 bits (379), Expect = 2e-34
 Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
 Frame = -1

Query: 459 RAFAVVQFTTAKCTERI-SLINRS--VYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALH 289
           R +A+VQFTT +  + I SL  R+  ++YG SYL  R+ME+D  P+PR  + ++    LH
Sbjct: 46  RLYAIVQFTTKEAADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELH 105

Query: 288 FGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEG 109
           FGC++S+++F VLW+G +V V FGFG RK+ FLLS+   +Y+LEL Y++IW+I+LH P  
Sbjct: 106 FGCKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRW 165

Query: 108 LNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
             TK+L+IQ++GAPRI QK + S   + E  ++NFF
Sbjct: 166 QMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFF 201


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  150 bits (379), Expect = 2e-34
 Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGA 298
           K    R +A+VQFT+A   E I SL N+ ++YG SYL  R  E DI PKPR  + +L   
Sbjct: 41  KRGGGRLYAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEEL 100

Query: 297 ALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHH 118
            L FGCQVS ++F VLW+G   +V FG G RK+ F L Y+ V+Y+LELSY+ IW+IQLH 
Sbjct: 101 LLCFGCQVSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHC 160

Query: 117 PEGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           P   + K+L+IQ+ GAPRI++K+  +SG + ++ + NFF
Sbjct: 161 PRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFF 199


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  150 bits (378), Expect = 2e-34
 Identities = 75/158 (47%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
 Frame = -1

Query: 468 SNPRAFAVVQFTT-AKCTERISLINRSVYYGGS-YLTIRKMERDIEPKPRVPVLSLTGAA 295
           +N R+FA+VQF + A  +  ++   R+    GS YL  R  ERDI P+PR  + +L GA 
Sbjct: 46  ANSRSFAIVQFQSEAHASLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAK 105

Query: 294 LHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHP 115
           LHFGC + +    VLW G DV VEFGF  ++++F L Y    YKLELSY+SIW+IQLH P
Sbjct: 106 LHFGCLLKERVLSVLWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRP 165

Query: 114 EGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
            GL  KFL+IQV  AP+I+++ +  SG+M +D ++N+F
Sbjct: 166 PGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYF 203


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score =  148 bits (373), Expect = 9e-34
 Identities = 74/158 (46%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
 Frame = -1

Query: 468 SNPRAFAVVQFTT-AKCTERISLINRSVYYGGS-YLTIRKMERDIEPKPRVPVLSLTGAA 295
           +N R+FA+VQF + A  +  ++   R+    GS YL  R  ERDI P+PR  + +L GA 
Sbjct: 46  ANSRSFAIVQFQSEAHASLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAK 105

Query: 294 LHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHP 115
           LHFGC + +    VLW G +V VEFGF  ++++F L Y    YKLELSY+SIW+IQLH P
Sbjct: 106 LHFGCLLKERVLSVLWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRP 165

Query: 114 EGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
            GL  KFL+IQV  AP+I+++ +  SG+M +D ++N+F
Sbjct: 166 PGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYF 203


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  147 bits (372), Expect = 1e-33
 Identities = 68/143 (47%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI--SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTG 301
           K   PR FA+VQFT  +   +I      R +YYG SYL   ++++DI PKPR  + +++G
Sbjct: 41  KKGGPRVFAIVQFTNERYARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISG 100

Query: 300 AALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLH 121
             ++FGCQVS  +F  LW  +DV V FG G RK+ F  S+   DY+LELSY++IW+I LH
Sbjct: 101 LKMYFGCQVSTQKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLH 160

Query: 120 HPEGLNTKFLIIQVVGAPRIHQK 52
            P+G ++KFL+IQV+GAP+I +K
Sbjct: 161 SPQGRSSKFLVIQVIGAPKIFEK 183


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  146 bits (368), Expect = 3e-33
 Identities = 74/154 (48%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
 Frame = -1

Query: 459 RAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALHFG 283
           RAFA+VQFT +     I  L N+ +YYG SYL  R+ME DI PKPRV + ++    ++F 
Sbjct: 45  RAFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFD 104

Query: 282 CQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEGLN 103
           C VS+++FYVLWK  +V + FG G RK+EFLLSY    YKLEL Y++IW+I+L  P    
Sbjct: 105 CHVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQT 164

Query: 102 TKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
           +K L+IQ+ GAPRI++K + +S  + +D + N+F
Sbjct: 165 SKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYF 198


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
           gi|548853371|gb|ERN11375.1| hypothetical protein
           AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  145 bits (367), Expect = 4e-33
 Identities = 71/158 (44%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
 Frame = -1

Query: 465 NPRAFAVVQFTTAKCTERISLIN---RSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAA 295
           N R FA+VQFTT+K  E I  +    +S+Y+G SY+ +R ME DI P PRV    L    
Sbjct: 118 NSRVFAIVQFTTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQ 177

Query: 294 LHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHP 115
           L+FG Q+S++ F +LW   +V VEFGFG +K+ F L++  VDYKL+L Y++IW+IQL  P
Sbjct: 178 LYFGNQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRP 237

Query: 114 EGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
               T++L++Q+ GAPRI QK L  S ++ +  ++N++
Sbjct: 238 GTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYY 275


>gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
          Length = 1114

 Score =  145 bits (367), Expect = 4e-33
 Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
 Frame = -1

Query: 468 SNPRAFAVVQFTTAKCTERISLINR--SVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAA 295
           +N R+FA+VQF T      +    R  ++  G +YL +R  ERDI  KPR  + +L  A 
Sbjct: 46  ANSRSFAIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDAT 105

Query: 294 LHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHP 115
           LHFGC + +    VLW G  V VEFGF  +K++F L+Y    YKLELSY+SIW+IQL+HP
Sbjct: 106 LHFGCLLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHP 165

Query: 114 EGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
            G   KFL+IQV+ AP+I+++ L  SG+M +D ++N+F
Sbjct: 166 PGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYF 203


>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  145 bits (367), Expect = 4e-33
 Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
 Frame = -1

Query: 468 SNPRAFAVVQFTTAKCTERISLINR--SVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAA 295
           +N R+FA+VQF T      +    R  ++  G +YL +R  ERDI  KPR  + +L  A 
Sbjct: 46  ANSRSFAIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDAT 105

Query: 294 LHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHP 115
           LHFGC + +    VLW G  V VEFGF  +K++F L+Y    YKLELSY+SIW+IQL+HP
Sbjct: 106 LHFGCLLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHP 165

Query: 114 EGLNTKFLIIQVVGAPRIHQKLLCSSGNMLEDSIYNFF 1
            G   KFL+IQV+ AP+I+++ L  SG+M +D ++N+F
Sbjct: 166 PGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYF 203


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  144 bits (364), Expect = 1e-32
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGA 298
           K   PR +A+VQFT+ + T  I +     +YYG SYL   ++E+DI PKPR  + +++G 
Sbjct: 41  KKGGPRVYAIVQFTSERHTRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGL 100

Query: 297 ALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHH 118
            + FGCQVS  +F  LW  +DV V FG G RK+ F  S+   DY+LELSY++IW+I LH 
Sbjct: 101 KMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHS 160

Query: 117 PEGLNTKFLIIQVVGAPRIHQK 52
           P+G ++KFL+IQV+GAP+I +K
Sbjct: 161 PQGRSSKFLVIQVIGAPKIFEK 182


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  144 bits (364), Expect = 1e-32
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGA 298
           K   PR +A+VQFT+ + T  I +     +YYG SYL   ++E+DI PKPR  + +++G 
Sbjct: 41  KKGGPRVYAIVQFTSERHTRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGL 100

Query: 297 ALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHH 118
            + FGCQVS  +F  LW  +DV V FG G RK+ F  S+   DY+LELSY++IW+I LH 
Sbjct: 101 KMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHS 160

Query: 117 PEGLNTKFLIIQVVGAPRIHQK 52
           P+G ++KFL+IQV+GAP+I +K
Sbjct: 161 PQGRSSKFLVIQVIGAPKIFEK 182


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  143 bits (360), Expect = 3e-32
 Identities = 68/143 (47%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI--SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTG 301
           K   PR FA+VQFT      +I      R +YYG SYL   ++E+DI PKPR  + +++G
Sbjct: 41  KKGGPRVFAIVQFTNEIYARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISG 100

Query: 300 AALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLH 121
             ++FGCQVS      LW  +DV V FG G RK+ F  S+   DY+LELSY++IW+I LH
Sbjct: 101 LKMYFGCQVSTQTLLTLWSAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLH 160

Query: 120 HPEGLNTKFLIIQVVGAPRIHQK 52
            P+G ++KFL+IQV+GAP+I +K
Sbjct: 161 SPQGRSSKFLVIQVIGAPKIFEK 183


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  142 bits (359), Expect = 4e-32
 Identities = 72/134 (53%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
 Frame = -1

Query: 450 AVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAALHFGCQV 274
           A VQFT+ +  E I +L  + V+YG +YL  R+M+ DI PKPR  + S+    LHFGCQ+
Sbjct: 49  AKVQFTSFELAEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQM 108

Query: 273 SDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPEGLNTKF 94
           SD+RF VLWK  +V V+FG G RK  F LS+   +YKLELSY++IW+IQL HP G  TKF
Sbjct: 109 SDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKF 168

Query: 93  LIIQVVGAPRIHQK 52
           L+IQ++GAP+I++K
Sbjct: 169 LLIQLLGAPQIYEK 182


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  140 bits (354), Expect = 1e-31
 Identities = 67/142 (47%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
 Frame = -1

Query: 474 KGSNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGA 298
           K   PR FA+VQFT+ +    I ++    +YYG SYL   +ME+DI PKPR  + S++  
Sbjct: 41  KRGGPRVFAIVQFTSERHARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNL 100

Query: 297 ALHFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHH 118
            ++FGCQVS  +   LW   +V V FG G RK+ F +S+   DY+LELSY++IW+I LH 
Sbjct: 101 KMYFGCQVSPKKLLTLWSAHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHS 160

Query: 117 PEGLNTKFLIIQVVGAPRIHQK 52
           P+G ++KFL+IQV+GAP+I +K
Sbjct: 161 PQGGSSKFLVIQVIGAPKIFEK 182


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
           subsp. vesca]
          Length = 1119

 Score =  140 bits (352), Expect = 2e-31
 Identities = 74/155 (47%), Positives = 101/155 (65%), Gaps = 2/155 (1%)
 Frame = -1

Query: 468 SNPRAFAVVQFTTAKCTERI-SLINRSVYYGGSYLTIRKMERDIEPKPRVPVLSLTGAAL 292
           S  R +A++QF +    E+I SL N  ++YG SYL  R    DI PKPR  + SL    L
Sbjct: 42  SGGRFYAIIQFQSISQAEKIISLANARLWYGRSYLNARPAH-DIVPKPRTFLHSLRDLVL 100

Query: 291 HFGCQVSDDRFYVLWKGKDVVVEFGFGFRKVEFLLSYEHVDYKLELSYDSIWKIQLHHPE 112
           H GCQV+ D+F VLW   +V V+FGFG R ++F L Y    Y+L+LSY++IW+I+LHH  
Sbjct: 101 HVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQR 160

Query: 111 GLNTKFLIIQVVGAPRIHQKLLCSS-GNMLEDSIY 10
           G + K+L+IQ+ G PRI+Q+ +CSS GN  ED  Y
Sbjct: 161 GRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNY 195