BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00009240
         (2577 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g...   545   e-152
emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]   535   e-149
ref|XP_006482257.1| PREDICTED: KH domain-containing protein At4g...   522   e-145
ref|XP_006430781.1| hypothetical protein CICLE_v10011187mg [Citr...   519   e-144
ref|XP_007033279.1| RNA-binding KH domain-containing protein iso...   506   e-140
ref|XP_007033276.1| RNA-binding KH domain-containing protein iso...   506   e-140
ref|XP_004304132.1| PREDICTED: KH domain-containing protein At4g...   467   e-128
ref|XP_006430782.1| hypothetical protein CICLE_v10011187mg [Citr...   460   e-126
ref|XP_007033280.1| RNA-binding KH domain-containing protein iso...   460   e-126
ref|XP_007033277.1| RNA-binding KH domain-containing protein iso...   460   e-126
ref|XP_006358053.1| PREDICTED: KH domain-containing protein At4g...   457   e-126
ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus ...   452   e-124
ref|XP_004234567.1| PREDICTED: KH domain-containing protein At4g...   447   e-122
ref|XP_006383459.1| hypothetical protein POPTR_0005s15690g [Popu...   437   e-119
ref|XP_007217649.1| hypothetical protein PRUPE_ppa027198mg, part...   434   e-118
gb|AEV43362.1| poly C-binding protein [Citrus sinensis]               399   e-108
ref|XP_006661902.1| PREDICTED: KH domain-containing protein At4g...   348   9e-93
ref|XP_007033281.1| RNA-binding KH domain-containing protein iso...   343   3e-91
gb|AAP54423.2| KH domain containing protein, expressed [Oryza sa...   335   8e-89
ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group] g...   335   8e-89

>ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
            vinifera] gi|296087281|emb|CBI33655.3| unnamed protein
            product [Vitis vinifera]
          Length = 676

 Score =  545 bits (1404), Expect = e-152
 Identities = 328/675 (48%), Positives = 398/675 (58%), Gaps = 7/675 (1%)
 Frame = +2

Query: 344  KRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAK 523
            KR    K+ R NNS++E   G    A+TVY ILCP+               ALR+ET AK
Sbjct: 18   KRKGSNKRGRWNNSSHEQSFGNSQVADTVYRILCPSKKIGGVIGKGGGIVKALREETQAK 77

Query: 524  IKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRV 703
            I + ++VPG+DERVIII+S+ T+ P+E                 + M+ HCPAQ AL++V
Sbjct: 78   ITVADSVPGSDERVIIIYSAPTKNPKEHDSNEDPEMEEE----QDHMEPHCPAQDALMKV 133

Query: 704  HERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRI 883
            HERI EE DL+G ++ ED+NEN VVTARLLVP+N VGCLLGK G VIQRLRSETGANIR+
Sbjct: 134  HERIIEE-DLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 192

Query: 884  LPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXX 1054
            LP EHLP CAMS+DELVQISG   VAKKALYEVSTLL+QNPR   PP ++          
Sbjct: 193  LPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKDKPPSSFPMSFGGQGFH 252

Query: 1055 XXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGP-AGNSGKAS 1231
                            WS+RNS               ++ P   PG   G  AG+ G+AS
Sbjct: 253  PPGASMGNMPPPGNPMWSNRNSNSQGVPPMPWMGGYRSQ-PSVVPGGFDGVHAGHGGEAS 311

Query: 1232 AEFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWN 1411
             EF+MKILCPA KIG VIGKGG NVKQ+QQETGA+IHVED+  E++ERVI VS F+  WN
Sbjct: 312  GEFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSSFEALWN 371

Query: 1412 PRSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRV 1591
            PRS TI+AILQLQ  T+E S+KG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV
Sbjct: 372  PRSQTIEAILQLQNKTSEYSDKGGMTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 431

Query: 1592 ISKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXX 1771
             SK+ KPKCAS +EELVQISGN  VA++AL+EIASRLRVR L   +   E          
Sbjct: 432  YSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRDANGGVEPAPVGPVPGF 491

Query: 1772 XXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPNINS 1951
                                                EYE  SYPV  +     GY N+NS
Sbjct: 492  GHPGKLPGGLPSSSGALGAGSSGGFELSKGGGL---EYEPQSYPVPPAA---TGYHNVNS 545

Query: 1952 SMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQ 2131
            SME KIP                       A+VKL DPQ+GGSECVVEI GSSE + AAQ
Sbjct: 546  SMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTAAQ 605

Query: 2132 NLLHSFIASA---TQNFTTQPPQQAHVAPAVQSYYAQQQESPYAAAQNYTAQQHQQSSYP 2302
            ++L +F+ASA    QN   Q     +++   Q+ Y      P    Q+  A   Q ++YP
Sbjct: 606  SILQAFMASAGAGGQNMNPQQGSYQNMSAHPQAPYQNMNAPPQVPYQSMNAPPQQAAAYP 665

Query: 2303 SAVQNYTAQQHPSPY 2347
                N +AQQ    Y
Sbjct: 666  ----NMSAQQSSYQY 676


>emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
          Length = 668

 Score =  535 bits (1377), Expect = e-149
 Identities = 315/621 (50%), Positives = 378/621 (60%), Gaps = 4/621 (0%)
 Frame = +2

Query: 344  KRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAK 523
            KR    K+ R NNS++E   G    A+TVY ILCP+               ALR+ET AK
Sbjct: 46   KRKGSNKRGRWNNSSHEQSFGNSQVADTVYRILCPSKKIGGVIGKGGGIVKALREETQAK 105

Query: 524  IKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRV 703
            I + ++VPG+DERVIII+S+ T+ P+E +               + M+ HCPAQ AL++V
Sbjct: 106  ITVADSVPGSDERVIIIYSAPTKNPKEHNSNEDPEREEE----QDHMEPHCPAQDALMKV 161

Query: 704  HERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRI 883
            HERI EE DL+G ++ ED+NEN VVTARLLVP+N VGCLLGK G VIQRLRSETGANIR+
Sbjct: 162  HERIIEE-DLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 220

Query: 884  LPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXX 1054
            LP EHLP CAMS+DELVQISG   VAKKALYEVSTLL+QNPR   PP ++          
Sbjct: 221  LPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKDKPPSSFPMSFGGQGFH 280

Query: 1055 XXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGP-AGNSGKAS 1231
                            WS+RNS               ++ P   PG   G  AG+ G+AS
Sbjct: 281  PPGASMGNMPPPGNPMWSNRNSNSQGVPPMPWMGGYRSQ-PSVVPGGFDGVHAGHGGEAS 339

Query: 1232 AEFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWN 1411
             EF+MKILCPA KIG VIGKGG NVKQ+QQETGA+IHVED+  E++ERVI VS F+  WN
Sbjct: 340  GEFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSSFEALWN 399

Query: 1412 PRSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRV 1591
            PRS TI+AILQLQ  T+E S+KG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV
Sbjct: 400  PRSQTIEAILQLQNKTSEYSDKGGMTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRV 459

Query: 1592 ISKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXX 1771
             SK+ KPKCAS +EELVQISGN  VA++AL+EIASRLRVR L   +   E          
Sbjct: 460  YSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRDANGGVEPAPVGPVPGF 519

Query: 1772 XXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPNINS 1951
                                                EYE  SYPV  +     GY N+NS
Sbjct: 520  GHPGKLPGGLPSSSGALGAGSSGGFELSKGGGL---EYEPQSYPVPPAA---TGYHNVNS 573

Query: 1952 SMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQ 2131
            SME KIP                       A+VKL DPQ+GGSECVVEI GSSE + AAQ
Sbjct: 574  SMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTAAQ 633

Query: 2132 NLLHSFIASATQNFTTQPPQQ 2194
            ++L +F+ASA        PQQ
Sbjct: 634  SILQAFMASAGAGGQNMNPQQ 654


>ref|XP_006482257.1| PREDICTED: KH domain-containing protein At4g18375 [Citrus sinensis]
          Length = 715

 Score =  522 bits (1344), Expect = e-145
 Identities = 326/735 (44%), Positives = 401/735 (54%), Gaps = 7/735 (0%)
 Frame = +2

Query: 356  GFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIKID 535
            G KK   +NS+ E   G    A+TVY ILCP+               +LR+ET AKI + 
Sbjct: 24   GIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKGGNIVKSLREETQAKITVA 83

Query: 536  EAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHERI 715
            + +PG++ERVIII+SS T+  ++ +               ESM+ HC AQ ALL+VH+RI
Sbjct: 84   DTIPGSEERVIIIYSSPTKIAKKVNKDDDSAAETKK----ESMEPHCAAQDALLKVHDRI 139

Query: 716  AEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILPPE 895
             EE DL+G    +D+NEN+ VTARLLVP+N VGCLLGK G VIQRLRSETGANIR+LP +
Sbjct: 140  IEE-DLFGGMASDDDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 198

Query: 896  HLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXXXX 1066
             LP CAM+TDELVQISG  +VAK+ALYEVSTLL+QNPR   PP ++              
Sbjct: 199  RLPPCAMNTDELVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPA 258

Query: 1067 XXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAEFN 1243
                        W  RNS               ++  R G G +NS P G  G+ SAEF+
Sbjct: 259  PMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFS 318

Query: 1244 MKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPRSP 1423
            MKILC A KIG VIGKGG NVKQ+QQETGA+IHVED+  ++DERVI  S F+  WNPRS 
Sbjct: 319  MKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQ 378

Query: 1424 TIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVISKD 1603
            TIDAILQLQ  T+E SEKG ITTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV SKD
Sbjct: 379  TIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKD 438

Query: 1604 GKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXXXXX 1783
             KPKCAS +EELVQISGN  VA++AL+EIASRLR R+L   +  AE              
Sbjct: 439  DKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRDANVGAEPAPVGPVQLVGAAG 498

Query: 1784 XXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPA--GYPNINSSM 1957
                                            +YE  SYP   S   P+  GYPN+NS+ 
Sbjct: 499  GLPSRGPLPSGPVGAGISGGYEPFRGGY----DYEPQSYPPPPSAPPPSATGYPNMNSAF 554

Query: 1958 EIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQNL 2137
            E +IP                       A+VKL DP  G SEC+V+I GSSE + +A   
Sbjct: 555  EARIPNKAVGSVMGTGGSNIPNVGEVVGARVKLQDPHPGSSECIVDIRGSSEHLISAHGT 614

Query: 2138 LHSFIASATQNFTTQPPQQAHVAPAVQSYYAQQQESPYAAAQNYTAQQHQQSSYPSAVQN 2317
              SF+ S  Q+   QP    ++ P   SY                      SS+ S+ QN
Sbjct: 615  YQSFMTSG-QSMKVQPSSYQNINPQQSSY-------------------QTMSSHQSSYQN 654

Query: 2318 YTAQQHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPH-SHYAAAAAMQQNYDPQHQ 2494
               QQ P         Y +   QQSPY     N +PQQ  +  H    A    +  P   
Sbjct: 655  MNTQQSP---------YHSVNAQQSPY----QNINPQQSSYPMHTHQGAGTNPHITP--- 698

Query: 2495 QHKGHYSSATMQQNY 2539
                +YSS+  Q  Y
Sbjct: 699  TQSSYYSSSAQQGTY 713


>ref|XP_006430781.1| hypothetical protein CICLE_v10011187mg [Citrus clementina]
            gi|557532838|gb|ESR44021.1| hypothetical protein
            CICLE_v10011187mg [Citrus clementina]
          Length = 710

 Score =  519 bits (1337), Expect = e-144
 Identities = 325/733 (44%), Positives = 398/733 (54%), Gaps = 5/733 (0%)
 Frame = +2

Query: 356  GFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIKID 535
            G KK   +NS+ E   G    A+TVY ILCP+               +LR+ET AKI + 
Sbjct: 24   GIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKGGNIVKSLREETQAKITVA 83

Query: 536  EAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHERI 715
            + +PG++ERVIII+SS T+  +  +               ESM+ HC AQ ALL+VH+RI
Sbjct: 84   DTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKK----ESMEPHCAAQDALLKVHDRI 139

Query: 716  AEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILPPE 895
             EE DL+G    +D+NEN+ VTARLLVP+N VGCLLGK G VIQRLRSETGANIR+LP +
Sbjct: 140  IEE-DLFGGMASDDDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 198

Query: 896  HLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXXXX 1066
             LP CAM+TDELVQISG  +VAK+ALYEVSTLL+QNPR   PP ++              
Sbjct: 199  RLPPCAMNTDELVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPA 258

Query: 1067 XXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAEFN 1243
                        W  RNS               ++  R G G +NS P G  G+ SAEF+
Sbjct: 259  PMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFS 318

Query: 1244 MKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPRSP 1423
            MKILC A KIG VIGKGG NVKQ+QQETGA+IHVED+  ++DERVI  S F+  WNPRS 
Sbjct: 319  MKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQ 378

Query: 1424 TIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVISKD 1603
            TIDAILQLQ  T+E SEKG ITTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV SKD
Sbjct: 379  TIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKD 438

Query: 1604 GKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXXXXX 1783
             KPKCAS +EELVQISGN  VA++AL+EIASRLR R+L   +  AE              
Sbjct: 439  DKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRDANVGAEPAPVGPVQLVGAAG 498

Query: 1784 XXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPNINSSMEI 1963
                                            +YE  SYP   S     GYPN+NS+ E 
Sbjct: 499  GLPSRGPLPSGPVGAGISGGYEPFRGGY----DYEPQSYPPPPSA---MGYPNMNSAFEA 551

Query: 1964 KIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQNLLH 2143
            +IP                       A+VKL DP  G SEC+V+I GSSE + +A     
Sbjct: 552  RIPNKAVGSVMGTGGSNIPNVGEVAGARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQ 611

Query: 2144 SFIASATQNFTTQPPQQAHVAPAVQSYYAQQQESPYAAAQNYTAQQHQQSSYPSAVQNYT 2323
            SF+ S  Q+   QP    ++ P   SY                      SS+ S+ QN  
Sbjct: 612  SFMTSG-QSMKVQPSSYQNINPQQSSY-------------------QTMSSHQSSYQNMN 651

Query: 2324 AQQHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPH-SHYAAAAAMQQNYDPQHQQH 2500
             QQ P         Y +   QQSPY     N +PQQ  +  H    A    +  P     
Sbjct: 652  TQQSP---------YHSVNAQQSPY----QNINPQQSSYPMHTHQGAGTNPHITP---TQ 695

Query: 2501 KGHYSSATMQQNY 2539
              +YSS+  Q  Y
Sbjct: 696  SSYYSSSAQQGTY 708


>ref|XP_007033279.1| RNA-binding KH domain-containing protein isoform 4 [Theobroma cacao]
            gi|508712308|gb|EOY04205.1| RNA-binding KH
            domain-containing protein isoform 4 [Theobroma cacao]
          Length = 706

 Score =  506 bits (1304), Expect = e-140
 Identities = 329/714 (46%), Positives = 399/714 (55%), Gaps = 15/714 (2%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            N+  K     NS +E  +G  N  +TVY +LCP+               ALR+ET AKI 
Sbjct: 23   NNNRKPKWGTNSGHEQPSGNFNSGDTVYRVLCPSRKIGGVIGKGGSIVKALREETQAKIT 82

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + ++V G DERVIII+SS  +   ++S                 M+  C AQ ALL+VH+
Sbjct: 83   VGDSVLGCDERVIIIYSSPMKVKTQNSDEDSRGENKKDEVV--VMEPCCAAQDALLKVHD 140

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IAE+ DL+G    +D+N N VVTARLLVP+N VGCLLGK G VIQRLRSETGA+IRILP
Sbjct: 141  QIAED-DLFGGMALDDDNGNTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILP 199

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             +HLPACAM+TDELVQISG  DVAK+ALYEVSTLL+QNPR   PP+++            
Sbjct: 200  ADHLPACAMATDELVQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPHAGQNFPPP 259

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAE 1237
                          WSHRNS               N    FGPG ++S P     +ASAE
Sbjct: 260  SAIPPSNPM-----WSHRNSSPHDIPSMPWMVPHGNRPSGFGPGSLSSFPPARGAEASAE 314

Query: 1238 FNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPR 1417
            F+MKILCPA KIG VIGKGG NVKQ+QQETGA IHVED+T E+DERVI VS  +  WNPR
Sbjct: 315  FSMKILCPAGKIGGVIGKGGFNVKQLQQETGAGIHVEDATIESDERVIRVSAIEGLWNPR 374

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            S TIDAILQLQ  T+E SEKG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV S
Sbjct: 375  SQTIDAILQLQNKTSEFSEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYS 434

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXXX 1777
            KD KPKCAS +EELVQISGN  VA++AL+EIASRLRVR+L  V+A AE            
Sbjct: 435  KDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRDVNAGAETAPVGPVNGFGP 494

Query: 1778 XXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAG--YPNINS 1951
                 D                           REYE    P  +    PA   Y N+N 
Sbjct: 495  ARSMAD---GLPPAAAIGPGRSGGYESFRGGGGREYE----PQNNYSVPPAAVRYSNMNG 547

Query: 1952 SMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQ 2131
            ++E KI                        A+V+L DPQTGGSE   E  GSSE + AAQ
Sbjct: 548  ALEAKI-LNNMSSSVTGTGGSTILNTQVSGARVRLEDPQTGGSE---EFRGSSEHLTAAQ 603

Query: 2132 NLLHSFIASATQNFTTQPPQQAHVAPAVQSYY-AQQQESPYAAAQNYTAQQ--------H 2284
            ++  SF+ S+ Q+   Q     +++    SY     Q SPY    N  AQQ        H
Sbjct: 604  SIFQSFMPSSGQSMNAQQSSYQNLSVQQSSYLNMNAQRSPY---PNMNAQQSPYQNRHPH 660

Query: 2285 QQSSYPSAVQNYTAQQHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPHSH 2446
            Q S Y    QN + QQ P    S    Y      Q+ Y    HN+  QQ  + +
Sbjct: 661  QSSPY----QNLSVQQSPYSVTSQQVAYANINAPQTAY----HNYSAQQGAYQY 706


>ref|XP_007033276.1| RNA-binding KH domain-containing protein isoform 1 [Theobroma cacao]
            gi|590652914|ref|XP_007033278.1| RNA-binding KH
            domain-containing protein isoform 1 [Theobroma cacao]
            gi|508712305|gb|EOY04202.1| RNA-binding KH
            domain-containing protein isoform 1 [Theobroma cacao]
            gi|508712307|gb|EOY04204.1| RNA-binding KH
            domain-containing protein isoform 1 [Theobroma cacao]
          Length = 706

 Score =  506 bits (1304), Expect = e-140
 Identities = 329/714 (46%), Positives = 399/714 (55%), Gaps = 15/714 (2%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            N+  K     NS +E  +G  N  +TVY +LCP+               ALR+ET AKI 
Sbjct: 23   NNNRKPKWGTNSGHEQPSGNFNSGDTVYRVLCPSRKIGGVIGKGGSIVKALREETQAKIT 82

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + ++V G DERVIII+SS  +   ++S                 M+  C AQ ALL+VH+
Sbjct: 83   VGDSVLGCDERVIIIYSSPMKVKTQNSDEDSRGENKKDEVV--VMEPCCAAQDALLKVHD 140

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IAE+ DL+G    +D+N N VVTARLLVP+N VGCLLGK G VIQRLRSETGA+IRILP
Sbjct: 141  QIAED-DLFGGMALDDDNGNTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILP 199

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             +HLPACAM+TDELVQISG  DVAK+ALYEVSTLL+QNPR   PP+++            
Sbjct: 200  ADHLPACAMATDELVQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPHAGQNFPPP 259

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAE 1237
                          WSHRNS               N    FGPG ++S P     +ASAE
Sbjct: 260  SAIPPSNPM-----WSHRNSSPHDIPSMPWMVPHGNRPSGFGPGSLSSFPPARGAEASAE 314

Query: 1238 FNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPR 1417
            F+MKILCPA KIG VIGKGG NVKQ+QQETGA IHVED+T E+DERVI VS  +  WNPR
Sbjct: 315  FSMKILCPAGKIGGVIGKGGFNVKQLQQETGAGIHVEDATIESDERVIRVSAIEGLWNPR 374

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            S TIDAILQLQ  T+E SEKG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV S
Sbjct: 375  SQTIDAILQLQNKTSEFSEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYS 434

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXXX 1777
            KD KPKCAS +EELVQISGN  VA++AL+EIASRLRVR+L  V+A AE            
Sbjct: 435  KDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRDVNAGAETAPVGPVNGFGP 494

Query: 1778 XXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAG--YPNINS 1951
                 D                           REYE    P  +    PA   Y N+N 
Sbjct: 495  ARSMAD---GLPPAAAIGPGRSGGYESFRGGGGREYE----PQNNYSVPPAAVRYSNMNG 547

Query: 1952 SMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQ 2131
            ++E KI                        A+V+L DPQTGGSE   E  GSSE + AAQ
Sbjct: 548  ALEAKI-LNNMSSSVTGTGGSTILNSEVSGARVRLEDPQTGGSE---EFRGSSEHLTAAQ 603

Query: 2132 NLLHSFIASATQNFTTQPPQQAHVAPAVQSYY-AQQQESPYAAAQNYTAQQ--------H 2284
            ++  SF+ S+ Q+   Q     +++    SY     Q SPY    N  AQQ        H
Sbjct: 604  SIFQSFMPSSGQSMNAQQSSYQNLSVQQSSYLNMNAQRSPY---PNMNAQQSPYQNRHPH 660

Query: 2285 QQSSYPSAVQNYTAQQHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPHSH 2446
            Q S Y    QN + QQ P    S    Y      Q+ Y    HN+  QQ  + +
Sbjct: 661  QSSPY----QNLSVQQSPYSVTSQQVAYANINAPQTAY----HNYSAQQGAYQY 706


>ref|XP_004304132.1| PREDICTED: KH domain-containing protein At4g18375-like [Fragaria
            vesca subsp. vesca]
          Length = 760

 Score =  467 bits (1202), Expect = e-128
 Identities = 313/756 (41%), Positives = 400/756 (52%), Gaps = 14/756 (1%)
 Frame = +2

Query: 344  KRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAK 523
            ++ S  +K   NNSN E  +G     ETVY ILCP+               +LR+ET +K
Sbjct: 19   RKGSSNQKGNLNNSNREQSSGNAQSLETVYRILCPSKKIGGVIGKGGGIIKSLREETRSK 78

Query: 524  IKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRV 703
            I + ++VPG+DERVIIIFS  T+  R+ +               + ++ HC AQ ALL+V
Sbjct: 79   ITVSDSVPGSDERVIIIFSPPTKISRKQNSDEDSHKADE----QKPLEPHCAAQDALLKV 134

Query: 704  HERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRI 883
            H+RI EE DLY     +D+NEN VVT RLLVP+N VGCLLGK G VIQRLRSET ANIR+
Sbjct: 135  HDRIVEE-DLYDGVTFDDDNENIVVT-RLLVPNNLVGCLLGKRGDVIQRLRSETRANIRV 192

Query: 884  LPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXX 1054
            LP + LP CAM TDELVQISG  DVAKKALYEVSTLL+QNPR   PP+            
Sbjct: 193  LPADQLPTCAMDTDELVQISGKPDVAKKALYEVSTLLHQNPRKDKPPLGLAIPFGGQGFH 252

Query: 1055 XXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGPAGNSGKASA 1234
                            W +R                 +       G +  PAG+  +ASA
Sbjct: 253  LRGAPNMFPPGNPI--WPNREPSHGMPPMPWIGECENHSSGYGRGGFDGDPAGHGVEASA 310

Query: 1235 EFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNP 1414
            EF +KILC A KIG VIGKGG NVKQ+Q+ETGANIHV+D++ +++ERVI VS F++   P
Sbjct: 311  EFFIKILCSAGKIGGVIGKGGFNVKQLQEETGANIHVQDASTDSEERVIRVSAFEVLRIP 370

Query: 1415 RSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVI 1594
            RS TI+AILQLQ   +E+S+KG ITTRLLVPSS+VGC+LGQGG +I EMRRR QADIRV 
Sbjct: 371  RSQTIEAILQLQNKASELSDKGTITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVY 430

Query: 1595 SKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXX 1774
            SKD +PKCA  +EELVQISGN  VA++AL+EI SRLR+R+L   +A  E           
Sbjct: 431  SKDDRPKCADEDEELVQISGNFAVAKDALAEITSRLRIRTLRDTNAGEEHAPVGPPPRFG 490

Query: 1775 XXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPNINSS 1954
                                               EYE   YPV  +    +GY  +N +
Sbjct: 491  PPGSL--PVKGMPPPLSAVRAGSSGRYDHLKVGRHEYEPEGYPVPPAA---SGYQRVNRA 545

Query: 1955 MEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQN 2134
            ++ +IP                        +VK  D Q+GG E V EI G S+Q+NAAQN
Sbjct: 546  LDSRIPNNAVGSFTGIGGSDVSHIGEVPRPRVKYQDSQSGGFEQVAEIRG-SDQLNAAQN 604

Query: 2135 LLHSFIASATQNFTTQPPQQAHVAPAVQSYY--AQQQESPY---AAAQNYTAQQHQQSSY 2299
            +L + +AS  QN + QP    H A   Q  Y      +SPY   A    Y     Q    
Sbjct: 605  ILQALMASMGQNASAQPSSH-HNANTRQGSYPNISDHQSPYHINAPRSPYRVNAPQSP-- 661

Query: 2300 PSAVQNYTAQQHPSPYASAAQNYGAQ-KQQQSPYASAAHNFDPQQQPHSHYAAAAAMQ-- 2470
                  Y      SP+   AQ    Q   QQSPY   +H     Q+P+   A  ++ Q  
Sbjct: 662  ------YRVNAQRSPFQIKAQQIPYQTNAQQSPYHINSH-----QRPYQLNAQQSSYQFR 710

Query: 2471 --QNYDPQHQQHKG-HYSSATMQQNYDPQQQHKGHY 2569
              Q  +P     +G H++ ++ Q  Y      +G Y
Sbjct: 711  APQGPNPNINAPQGAHHNLSSQQGAYHNLNSQQGAY 746


>ref|XP_006430782.1| hypothetical protein CICLE_v10011187mg [Citrus clementina]
            gi|557532839|gb|ESR44022.1| hypothetical protein
            CICLE_v10011187mg [Citrus clementina]
          Length = 528

 Score =  460 bits (1183), Expect = e-126
 Identities = 258/466 (55%), Positives = 310/466 (66%), Gaps = 4/466 (0%)
 Frame = +2

Query: 356  GFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIKID 535
            G KK   +NS+ E   G    A+TVY ILCP+               +LR+ET AKI + 
Sbjct: 24   GIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKGGNIVKSLREETQAKITVA 83

Query: 536  EAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHERI 715
            + +PG++ERVIII+SS T+  +  +               ESM+ HC AQ ALL+VH+RI
Sbjct: 84   DTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKK----ESMEPHCAAQDALLKVHDRI 139

Query: 716  AEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILPPE 895
             EE DL+G    +D+NEN+ VTARLLVP+N VGCLLGK G VIQRLRSETGANIR+LP +
Sbjct: 140  IEE-DLFGGMASDDDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 198

Query: 896  HLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXXXX 1066
             LP CAM+TDELVQISG  +VAK+ALYEVSTLL+QNPR   PP ++              
Sbjct: 199  RLPPCAMNTDELVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPA 258

Query: 1067 XXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAEFN 1243
                        W  RNS               ++  R G G +NS P G  G+ SAEF+
Sbjct: 259  PMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFS 318

Query: 1244 MKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPRSP 1423
            MKILC A KIG VIGKGG NVKQ+QQETGA+IHVED+  ++DERVI  S F+  WNPRS 
Sbjct: 319  MKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQ 378

Query: 1424 TIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVISKD 1603
            TIDAILQLQ  T+E SEKG ITTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV SKD
Sbjct: 379  TIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKD 438

Query: 1604 GKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAE 1741
             KPKCAS +EELVQISGN  VA++AL+EIASRLR R+L   +  AE
Sbjct: 439  DKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRDANVGAE 484


>ref|XP_007033280.1| RNA-binding KH domain-containing protein isoform 5 [Theobroma cacao]
            gi|508712309|gb|EOY04206.1| RNA-binding KH
            domain-containing protein isoform 5 [Theobroma cacao]
          Length = 591

 Score =  460 bits (1183), Expect = e-126
 Identities = 264/468 (56%), Positives = 314/468 (67%), Gaps = 4/468 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            N+  K     NS +E  +G  N  +TVY +LCP+               ALR+ET AKI 
Sbjct: 23   NNNRKPKWGTNSGHEQPSGNFNSGDTVYRVLCPSRKIGGVIGKGGSIVKALREETQAKIT 82

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + ++V G DERVIII+SS  +   ++S                 M+  C AQ ALL+VH+
Sbjct: 83   VGDSVLGCDERVIIIYSSPMKVKTQNSDEDSRGENKKDEVV--VMEPCCAAQDALLKVHD 140

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IAE+ DL+G    +D+N N VVTARLLVP+N VGCLLGK G VIQRLRSETGA+IRILP
Sbjct: 141  QIAED-DLFGGMALDDDNGNTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILP 199

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             +HLPACAM+TDELVQISG  DVAK+ALYEVSTLL+QNPR   PP+++            
Sbjct: 200  ADHLPACAMATDELVQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPHAGQNFPPP 259

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAE 1237
                          WSHRNS               N    FGPG ++S P     +ASAE
Sbjct: 260  SAIPPSNPM-----WSHRNSSPHDIPSMPWMVPHGNRPSGFGPGSLSSFPPARGAEASAE 314

Query: 1238 FNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPR 1417
            F+MKILCPA KIG VIGKGG NVKQ+QQETGA IHVED+T E+DERVI VS  +  WNPR
Sbjct: 315  FSMKILCPAGKIGGVIGKGGFNVKQLQQETGAGIHVEDATIESDERVIRVSAIEGLWNPR 374

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            S TIDAILQLQ  T+E SEKG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV S
Sbjct: 375  SQTIDAILQLQNKTSEFSEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYS 434

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAE 1741
            KD KPKCAS +EELVQISGN  VA++AL+EIASRLRVR+L  V+A AE
Sbjct: 435  KDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRDVNAGAE 482


>ref|XP_007033277.1| RNA-binding KH domain-containing protein isoform 2 [Theobroma cacao]
            gi|508712306|gb|EOY04203.1| RNA-binding KH
            domain-containing protein isoform 2 [Theobroma cacao]
          Length = 580

 Score =  460 bits (1183), Expect = e-126
 Identities = 264/468 (56%), Positives = 314/468 (67%), Gaps = 4/468 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            N+  K     NS +E  +G  N  +TVY +LCP+               ALR+ET AKI 
Sbjct: 23   NNNRKPKWGTNSGHEQPSGNFNSGDTVYRVLCPSRKIGGVIGKGGSIVKALREETQAKIT 82

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + ++V G DERVIII+SS  +   ++S                 M+  C AQ ALL+VH+
Sbjct: 83   VGDSVLGCDERVIIIYSSPMKVKTQNSDEDSRGENKKDEVV--VMEPCCAAQDALLKVHD 140

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IAE+ DL+G    +D+N N VVTARLLVP+N VGCLLGK G VIQRLRSETGA+IRILP
Sbjct: 141  QIAED-DLFGGMALDDDNGNTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILP 199

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             +HLPACAM+TDELVQISG  DVAK+ALYEVSTLL+QNPR   PP+++            
Sbjct: 200  ADHLPACAMATDELVQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPHAGQNFPPP 259

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAE 1237
                          WSHRNS               N    FGPG ++S P     +ASAE
Sbjct: 260  SAIPPSNPM-----WSHRNSSPHDIPSMPWMVPHGNRPSGFGPGSLSSFPPARGAEASAE 314

Query: 1238 FNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPR 1417
            F+MKILCPA KIG VIGKGG NVKQ+QQETGA IHVED+T E+DERVI VS  +  WNPR
Sbjct: 315  FSMKILCPAGKIGGVIGKGGFNVKQLQQETGAGIHVEDATIESDERVIRVSAIEGLWNPR 374

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            S TIDAILQLQ  T+E SEKG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV S
Sbjct: 375  SQTIDAILQLQNKTSEFSEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYS 434

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAE 1741
            KD KPKCAS +EELVQISGN  VA++AL+EIASRLRVR+L  V+A AE
Sbjct: 435  KDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRDVNAGAE 482


>ref|XP_006358053.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X1
            [Solanum tuberosum] gi|565383832|ref|XP_006358054.1|
            PREDICTED: KH domain-containing protein At4g18375-like
            isoform X2 [Solanum tuberosum]
          Length = 705

 Score =  457 bits (1177), Expect = e-126
 Identities = 291/698 (41%), Positives = 381/698 (54%), Gaps = 11/698 (1%)
 Frame = +2

Query: 335  PLDKRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDET 514
            P  KR  G K ++ N S++E  +     ++T YCILC +               ALR+ET
Sbjct: 15   PQFKRKGGSKNAKLNFSSHERSSENSQSSDTTYCILCQSKKVGSVIGKGGSIIKALREET 74

Query: 515  HAKIKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHAL 694
             AKI + ++VPG+D+R++I+ S ST+  R  +              + SM+ HC AQ AL
Sbjct: 75   QAKITVADSVPGSDDRIVIVSSPSTKLARRQNNDKNNDNPETKEE-NCSMEPHCAAQDAL 133

Query: 695  LRVHERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGAN 874
            L+VH RI EE DL GV + ED +E  ++T RLLVP+N VGCLLG+ G VIQ+LRSETGA+
Sbjct: 134  LKVHNRIVEE-DLQGVQN-EDKSETVIIT-RLLVPNNLVGCLLGRKGDVIQKLRSETGAS 190

Query: 875  IRILPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXX 1045
            IR+L  EHLPACAM+TDELVQISG   + KKALYEVSTLL+QNPR   P  ++       
Sbjct: 191  IRVLSAEHLPACAMTTDELVQISGKPALVKKALYEVSTLLHQNPRKDKPISSFPMVHGAQ 250

Query: 1046 XXXXXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSG 1222
                               WS   +               N+   FG    + GP  ++G
Sbjct: 251  GFHPPGPPMENMIPPGKPMWSQSKTNLNGMSPALGVGGYRNQLTGFGRADFDYGPPPSAG 310

Query: 1223 KASAEFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDI 1402
            +A  +F MKILC A KIG VIGKGG NVKQ+QQ+TGA IHVED   E+DERVI VS  + 
Sbjct: 311  EAPGDFTMKILCSAAKIGGVIGKGGFNVKQLQQDTGAGIHVEDVAPESDERVIRVSSLES 370

Query: 1403 PWNPRSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQAD 1582
             W+PRS TIDAILQLQ  T+E S+KGI+TTRLL PS++VGC++GQGG +I EMRRR QAD
Sbjct: 371  FWDPRSRTIDAILQLQSKTSEFSDKGIVTTRLLFPSNKVGCIIGQGGQVINEMRRRTQAD 430

Query: 1583 IRVISKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXX 1762
            IRV+SKD KP+CASA+EELVQISG+  VA++AL EI+SRLR R L   ++  E       
Sbjct: 431  IRVLSKDDKPRCASADEELVQISGSIGVAKDALVEISSRLRERCLRDANSKVE---STPV 487

Query: 1763 XXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPN 1942
                      D                           REY+ PSYP          + N
Sbjct: 488  RPLPGFVPSEDFRSGDPQRSGAMGAGSSRRYEHLKGAVREYDHPSYPDLPIA---TRFSN 544

Query: 1943 INSSMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMN 2122
            I S  E+K P                          +  DP++ G   + +I G+S+ MN
Sbjct: 545  IRSPPEMKFP---DHSYGSAKGTGGYNIDEFAGRSARFQDPRSVGPGFIDDIRGTSDHMN 601

Query: 2123 AAQNLLHSFIASATQNFTT-QPPQQAHVAPAVQSYYAQQQESPYAAAQNYTAQQHQQSS- 2296
            A  N+ H     +++NF   +P  Q + +PA QS   QQ     A  QNY AQQ    S 
Sbjct: 602  AGHNVFH----GSSENFNAGRPTFQGYGSPAGQSSNIQQG----AYHQNYAAQQSAYQSY 653

Query: 2297 -----YPSAVQNYTAQQHPSPYASAAQNYGAQKQQQSP 2395
                 YPS   +    Q+P+P+ +  QN  +Q+ QQ+P
Sbjct: 654  PAKGGYPSGSPSQLPYQNPNPHQAPYQNINSQQHQQAP 691


>ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
            gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein,
            putative [Ricinus communis]
          Length = 537

 Score =  452 bits (1162), Expect = e-124
 Identities = 259/469 (55%), Positives = 307/469 (65%), Gaps = 3/469 (0%)
 Frame = +2

Query: 344  KRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAK 523
            KR    +K + NNS  E  +G P   +TVY ILCP+                LR+ET AK
Sbjct: 18   KRKGVTRKGKWNNSGREESSGNPLPVDTVYRILCPSRKIGGVIGKGGGIIKGLREETQAK 77

Query: 524  IKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRV 703
            I + + VPG+DERVIII+SS    P + S               + M+ +C AQ ALL+V
Sbjct: 78   ITVADPVPGSDERVIIIYSS----PEKISRNHNDHEDLTMENEQDIMEPYCAAQDALLKV 133

Query: 704  HERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRI 883
            H+RI EE DL+G    +D+NEN  VTARLLVP+N VGCLLGK G VIQRLRSETGANIR+
Sbjct: 134  HDRIVEE-DLFGGMTSDDDNENGFVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRV 192

Query: 884  LPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPRP--PINYXXXXXXXXXXX 1057
            LP +HLP CAMSTDELVQIS   DVAKKALYEVSTLL+QNPR   P +            
Sbjct: 193  LPADHLPTCAMSTDELVQISAKPDVAKKALYEVSTLLHQNPRKDKPPSVPMPYSGQSFHP 252

Query: 1058 XXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASA 1234
                           W H NS               ++   FGPG  +  P G+  + SA
Sbjct: 253  PGGPMKNLPPLGSPMWPHHNSSHSIPPMPIMGRYG-SQSSGFGPGGFDDVPRGHVAEPSA 311

Query: 1235 EFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNP 1414
            EF+MKILC A KIG VIGKGGSNVK +QQ+TGA+IHVED++ E+DERVI VS  +  WNP
Sbjct: 312  EFSMKILCSAGKIGGVIGKGGSNVKVVQQDTGASIHVEDASAESDERVIRVSASEALWNP 371

Query: 1415 RSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVI 1594
            RS TIDAILQLQ  T++ SEKG ITTRLLVPSS+VGC+LGQGG +I EMRRR QADIRV 
Sbjct: 372  RSQTIDAILQLQNKTSDFSEKGTITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVY 431

Query: 1595 SKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAE 1741
            SKD KPKCAS +EELVQISG   VA++AL+EIASRLRVR+L  V+A AE
Sbjct: 432  SKDEKPKCASEDEELVQISGKFGVAKDALAEIASRLRVRTLRDVNAGAE 480


>ref|XP_004234567.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
            lycopersicum]
          Length = 707

 Score =  447 bits (1149), Expect = e-122
 Identities = 291/713 (40%), Positives = 379/713 (53%), Gaps = 11/713 (1%)
 Frame = +2

Query: 335  PLDKRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDET 514
            P  KR  G K ++ N S++E  +     ++T YCILC +               ALR+ET
Sbjct: 15   PQFKRKGGSKNAKLNFSSHERSSENSQSSDTTYCILCQSKKVGSVIGKGGSIIKALREET 74

Query: 515  HAKIKIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHAL 694
             AKI + ++VPG+D+R++II S ST+  R  +              + SM+ HC AQ AL
Sbjct: 75   QAKITVADSVPGSDDRIVIISSPSTKLARRQNNDKNNDNPETKEENY-SMEPHCAAQDAL 133

Query: 695  LRVHERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGAN 874
            L+VH RI EE DL GV + ED +E  ++T RLLVP+N VGCLLG+ G VIQ+LRSETGA+
Sbjct: 134  LKVHNRIVEE-DLLGVQN-EDKSEAVIIT-RLLVPNNLVGCLLGRKGDVIQKLRSETGAS 190

Query: 875  IRILPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXX 1045
            IR+L  EHLPACAM+TDELVQISG   + KKALYEVSTLL+QNPR   P  ++       
Sbjct: 191  IRVLSAEHLPACAMTTDELVQISGKPALVKKALYEVSTLLHQNPRKDKPISSFPMVHGAQ 250

Query: 1046 XXXXXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSG 1222
                               WS   +               N+   FG    + GP  ++G
Sbjct: 251  GFHPPGPPMENMIPPGKPMWSQSKTNLNGMPPALGVGGYRNQLTGFGRADFDYGPPPSAG 310

Query: 1223 KASAEFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDI 1402
            +A  +F MKILC A KIG VIGKGG NVKQ+QQETGA IHVED   E+DERVI VS  + 
Sbjct: 311  EAPGDFTMKILCSAAKIGGVIGKGGFNVKQLQQETGAGIHVEDVAPESDERVIRVSSLES 370

Query: 1403 PWNPRSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQAD 1582
             W+PRS TIDAILQLQ  T+E S+KGI+TTRLL PS++VGC++GQGG +I EMRRR QAD
Sbjct: 371  FWDPRSRTIDAILQLQSKTSEFSDKGIVTTRLLFPSNKVGCIIGQGGQVINEMRRRTQAD 430

Query: 1583 IRVISKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXX 1762
            IRV+SKD KP+CASA+EELVQISG+  VA++AL EI+SRLR R L   ++  E       
Sbjct: 431  IRVLSKDEKPRCASADEELVQISGSIGVAKDALVEISSRLRERCLRDANSKVE---STHV 487

Query: 1763 XXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPN 1942
                      D                           RE + PSYP          + N
Sbjct: 488  RPLPGFVPSEDFRSRDPQRSGVMGAGSSRRYEHLKGAVRECDHPSYPDLPIA---TRFSN 544

Query: 1943 INSSMEIKIPXXXXXXXXXXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMN 2122
              S  E+K P                       +  +  DP++ G   V +I G+S++MN
Sbjct: 545  TRSPPEMKFP---DHSYGTAKGTGGYNIDEFAGSSARYQDPRSIGPGFVDDIRGTSDRMN 601

Query: 2123 AAQNLLHSFIASATQNFTT-QPPQQAHVAPAVQSYYAQQQESPYAAAQNYTAQQHQQSS- 2296
            A  N+ H     +++N    +P  Q + +PA QS    Q     A  QNY AQQ    S 
Sbjct: 602  AGHNVFH----GSSENLNAGRPTFQGYGSPAGQSSNIHQG----AYHQNYAAQQSAYQSY 653

Query: 2297 -----YPSAVQNYTAQQHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPH 2440
                 YPS   +    Q+P+P+ +  QN  +Q+ Q         N   Q   H
Sbjct: 654  PAKGGYPSGSPSQLPYQNPNPHQAPYQNINSQQHQHQQAPPPYQNMAAQGSYH 706


>ref|XP_006383459.1| hypothetical protein POPTR_0005s15690g [Populus trichocarpa]
            gi|550339070|gb|ERP61256.1| hypothetical protein
            POPTR_0005s15690g [Populus trichocarpa]
          Length = 563

 Score =  437 bits (1123), Expect = e-119
 Identities = 249/472 (52%), Positives = 304/472 (64%), Gaps = 7/472 (1%)
 Frame = +2

Query: 347  RNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKI 526
            +  G   SR+   +   G       +TVY ILCP+               ALR+ET +KI
Sbjct: 18   KRKGVSSSRKGKWSDSHGEECSGDGDTVYRILCPSRKIGGVIGKGGNIVKALREETQSKI 77

Query: 527  KIDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVH 706
             + ++V G+DERVIII+SSS + PR+                 E+ + HC AQ ALL+VH
Sbjct: 78   TVADSVQGSDERVIIIYSSSDKPPRKMDGDEGLPAGNGQ---QEAFEPHCAAQDALLKVH 134

Query: 707  ERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRIL 886
            +RI EE DL+G    +D+N+NNVVTARLLVP+N VGC+LGK G VIQRLRSETGANIR+L
Sbjct: 135  DRIVEE-DLFGGMASDDDNDNNVVTARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVL 193

Query: 887  PPEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPRP------PINYXXXXXXXX 1048
            P +HLP+CAM TDELVQISG   VAK+ALYE+S LL+QNPR       P+ Y        
Sbjct: 194  PADHLPSCAMDTDELVQISGKPAVAKRALYEISILLHQNPRKDKLPSVPMPYGGRTFHPP 253

Query: 1049 XXXXXXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGK 1225
                              W HRNS               +EF   GPG  N  P G+  +
Sbjct: 254  SDSMANMLPPGNPM----WPHRNSTPHSMPWMGEYGNHPSEF---GPGGFNGVPPGHGRE 306

Query: 1226 ASAEFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIP 1405
             SAEF+MKILC   KIG VIGKGGSNVK +QQETGA+IHVED++ E++ER I VS F+  
Sbjct: 307  PSAEFSMKILCSTGKIGGVIGKGGSNVKIVQQETGASIHVEDASAESEERAIRVSAFEGL 366

Query: 1406 WNPRSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADI 1585
            WNPRS TIDAILQLQ  T++ SEKG+I TRLLVPSS+VGC+LGQGG +I EMRRR QADI
Sbjct: 367  WNPRSQTIDAILQLQDKTSDFSEKGMIITRLLVPSSKVGCILGQGGQVINEMRRRLQADI 426

Query: 1586 RVISKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAE 1741
            RV  K+ KPKCAS +EELVQISGN  VA++AL+EIASRLR R+L   +A  E
Sbjct: 427  RVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTLRDANAGTE 478


>ref|XP_007217649.1| hypothetical protein PRUPE_ppa027198mg, partial [Prunus persica]
            gi|462413799|gb|EMJ18848.1| hypothetical protein
            PRUPE_ppa027198mg, partial [Prunus persica]
          Length = 576

 Score =  434 bits (1115), Expect = e-118
 Identities = 261/546 (47%), Positives = 325/546 (59%), Gaps = 5/546 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            N+ +KK   NNS  E         +TVY ILCP+               ALR+ET AKI 
Sbjct: 23   NNNYKKGNWNNSTREQLLENYQSLDTVYRILCPSKRIGGVIGKGGGIVKALREETRAKIT 82

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + ++V G+DERVIIIFSS T+   + +               E M  HC AQ ALL+VH 
Sbjct: 83   VADSVLGSDERVIIIFSSPTKISSKQTNDGDSSEENEL----EPMDPHCAAQDALLKVHN 138

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            RI EE DL+G    +D+NEN+VVTARLLVP+N VGCLLGKGG VIQRLRSET A+IR+LP
Sbjct: 139  RIVEE-DLFGGVTFDDDNENSVVTARLLVPNNMVGCLLGKGGDVIQRLRSETSASIRVLP 197

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             + LP CAM TDELVQISG  DV K+ALYEVSTLL+QNPR   PP  +            
Sbjct: 198  ADQLPTCAMETDELVQISGKPDVTKRALYEVSTLLHQNPRKDKPPSGFPMPFWGQGFRPP 257

Query: 1061 XXXXXXXXXXXXXXWSHR--NSXXXXXXXXXXXXXXXNEFPRFGPGVNSGPAGNSGKASA 1234
                          WS+R  +                +EF     G N  P G+ G+A A
Sbjct: 258  GAPMTNVLPPGNPMWSNRAPSHSTAPMPRMEGYGNCSSEFAL--GGFNGVPPGHGGEALA 315

Query: 1235 EFNMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNP 1414
            EF+MKILC   KIG VIGKGG NVKQ+Q ETGA+IHV++++ +++ERVI VS F+  WNP
Sbjct: 316  EFSMKILCSPGKIGGVIGKGGFNVKQLQLETGASIHVQEASTDSEERVIHVSAFEAFWNP 375

Query: 1415 RSPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVI 1594
             S TI+AIL+LQ  T+E+S+KGIITTRLLVPSS+VGC+LGQGG +I EMRRR QADIRV 
Sbjct: 376  ISQTIEAILELQNKTSELSDKGIITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVY 435

Query: 1595 SKDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXX 1774
            SKD +P+CA+ +EELVQISGN  VA++AL+EI SRLRVR+L   +A AE           
Sbjct: 436  SKDDRPRCAAEDEELVQISGNFGVAKDALAEITSRLRVRTLRDANAGAEPALVGPAHGFG 495

Query: 1775 XXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAGYPNINSS 1954
                                               EYE  SY + S+    +GYP++N +
Sbjct: 496  LAGSV--PGGGPRQPPSAVGAGSSSRYDPLKVGRHEYELQSYRIPSTA---SGYPSVNHA 550

Query: 1955 MEIKIP 1972
            +E KIP
Sbjct: 551  LEGKIP 556


>gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
          Length = 569

 Score =  399 bits (1026), Expect = e-108
 Identities = 223/417 (53%), Positives = 272/417 (65%), Gaps = 4/417 (0%)
 Frame = +2

Query: 356  GFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIKID 535
            G KK   +NS+ E   G    A+TVY ILCP+               +LR+ET AKI + 
Sbjct: 24   GIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVA 83

Query: 536  EAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHERI 715
            + +PG++ERVIII+SS T+  +  +               ESM+ HC AQ ALL+VH+RI
Sbjct: 84   DTIPGSEERVIIIYSSPTKIAKTQNKDDDSAAETKK----ESMEPHCAAQDALLKVHDRI 139

Query: 716  AEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILPPE 895
             EE DL+G    +D+NEN+ +TARLLVP+N VGCLLGK G VIQRLRSETGANIR+LP +
Sbjct: 140  IEE-DLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAD 198

Query: 896  HLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXXXX 1066
             LP CAM+TDE+VQISG  +VAK+ALYEVSTLL+QNPR   PP ++              
Sbjct: 199  RLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYGGQNFHSPPA 258

Query: 1067 XXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAEFN 1243
                        W  RNS               ++  R G G +NS P G  G+ SAEF+
Sbjct: 259  PMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSRMGSGSINSCPPGQMGEVSAEFS 318

Query: 1244 MKILCPADKIGVVIGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPRSP 1423
            MKILC A KIG VIGKGG NVKQ+QQETGA+IHVED+  ++DERVI  S F+  WNPRS 
Sbjct: 319  MKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQ 378

Query: 1424 TIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVI 1594
            TIDAILQLQ  T+E SEKG ITTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV+
Sbjct: 379  TIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVV 435



 Score =  110 bits (274), Expect = 4e-21
 Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 40/219 (18%)
 Frame = +2

Query: 1166 NEFPRFGP-GVNSGPAGNSGKASAEFNM-------KILCPADKIGVVIGKGGSNVKQIQQ 1321
            N+F R G  G+  G   NS +  +  N        +ILCP+ KIG VIGK G+ VK +++
Sbjct: 15   NQFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLRE 74

Query: 1322 ETGANIHVEDSTGEADERVILVSCFDIP---------------------WNPRSPTIDAI 1438
            ET A I V D+   ++ERVI++  +  P                       P     DA+
Sbjct: 75   ETQAKITVADTIPGSEERVIII--YSSPTKIAKTQNKDDDSAAETKKESMEPHCAAQDAL 132

Query: 1439 LQLQ-----------VHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADI 1585
            L++            + +++ +E   IT RLLVP++ VGCLLG+ G +I  +R    A+I
Sbjct: 133  LKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANI 192

Query: 1586 RVISKDGKPKCASAEEELVQISGNANVARNALSEIASRL 1702
            RV+  D  P CA   +E+VQISG  NVA+ AL E+++ L
Sbjct: 193  RVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLL 231



 Score = 64.3 bits (155), Expect = 3e-07
 Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2042 AKVKLNDPQTGGSECVVEIHGSSEQMNAAQNLLHSFIASATQNFTTQPPQQAHVAPAVQS 2221
            A+VKL DP  G SEC+V+I GSSE + +A     SF+ S  Q+   QP    ++ P  Q 
Sbjct: 437  ARVKLQDPHPGSSECIVDIRGSSEHLISAHGTYQSFMTSG-QSMKVQPSSYQNINP--QQ 493

Query: 2222 YYAQQQESPYAAAQNYTAQQ---HQQSSYPSAVQNYTAQQHPSP---YASAAQNYGAQKQ 2383
               Q   S  ++ QN   QQ   H+ ++  S  QN   QQ   P   +  A  N      
Sbjct: 494  SSCQTMSSHQSSYQNMNTQQSPYHRVNAQQSPYQNINPQQSSYPMHTHQGAGTNPHITPT 553

Query: 2384 QQSPYASAA 2410
            Q S Y+S+A
Sbjct: 554  QSSYYSSSA 562


>ref|XP_006661902.1| PREDICTED: KH domain-containing protein At4g18375-like [Oryza
            brachyantha]
          Length = 773

 Score =  348 bits (892), Expect = 9e-93
 Identities = 201/466 (43%), Positives = 283/466 (60%), Gaps = 4/466 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            NS  +K +R N+ ++ G+      ET+Y ILCP                ALRDET AKI+
Sbjct: 21   NSDDRKRKRLNTKHDDGSMSSQPTETIYRILCPVKKIGSVLGRGGDVVKALRDETKAKIR 80

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + +++PG DERVIIIF+  ++   + +               ++M+ HC AQ ALL++H+
Sbjct: 81   VADSIPGADERVIIIFNYPSQSEDDEAAQNISTDGF------QNMKPHCFAQDALLKIHD 134

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IAE+EDL+G  DHE +   + VTAR+LVP N+VGCLLGKGG +IQ+LR+ETGA IR+LP
Sbjct: 135  KIAEDEDLHGGIDHEKSETVDGVTARILVPGNQVGCLLGKGGSIIQQLRNETGAGIRVLP 194

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             E+LP CA+ +DELVQISGA  + +KALYE+ST L+Q+PR   PP+              
Sbjct: 195  SENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQHPRKDNPPLE-----------EI 243

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGPAGNSGKASAEF 1240
                            H N                 + P   P   +GP       + EF
Sbjct: 244  IDASTQRKHQSPPQLPHANPMLPHLHVDHSP-----QIPLLDP-YRNGPLRYHAGEAEEF 297

Query: 1241 NMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVED-STGEADERVILVSCFDIPWNPR 1417
            ++KILC ++ IG VIGK G NV+Q++Q+TGA I V++     + ER+I+VS  +IP +P 
Sbjct: 298  SIKILCASEHIGQVIGKSGGNVRQVEQQTGARIQVKEVGKNASGERLIVVSSQEIPDDPV 357

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            SPTI+A++ L    +  +E   +TTRL+VPS++VGC+LG+GG +ITEMRRR  A+IRV S
Sbjct: 358  SPTIEALILLHSKVSAPAENRHLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRVYS 417

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSAT 1735
            K  KPK  S +EELVQ++G   +AR AL+EIASRLR R+L   S++
Sbjct: 418  KADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDGSSS 463


>ref|XP_007033281.1| RNA-binding KH domain-containing protein isoform 6, partial
            [Theobroma cacao] gi|508712310|gb|EOY04207.1| RNA-binding
            KH domain-containing protein isoform 6, partial
            [Theobroma cacao]
          Length = 530

 Score =  343 bits (879), Expect = 3e-91
 Identities = 231/519 (44%), Positives = 276/519 (53%), Gaps = 15/519 (2%)
 Frame = +2

Query: 935  QISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXXXXXXXXXXXXXXXXW 1105
            +ISG  DVAK+ALYEVSTLL+QNPR   PP+++                          W
Sbjct: 39   KISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPHAGQNFPPPSAIPPSNPM-----W 93

Query: 1106 SHRNSXXXXXXXXXXXXXXXNEFPRFGPG-VNSGPAGNSGKASAEFNMKILCPADKIGVV 1282
            SHRNS               N    FGPG ++S P     +ASAEF+MKILCPA KIG V
Sbjct: 94   SHRNSSPHDIPSMPWMVPHGNRPSGFGPGSLSSFPPARGAEASAEFSMKILCPAGKIGGV 153

Query: 1283 IGKGGSNVKQIQQETGANIHVEDSTGEADERVILVSCFDIPWNPRSPTIDAILQLQVHTN 1462
            IGKGG NVKQ+QQETGA IHVED+T E+DERVI VS  +  WNPRS TIDAILQLQ  T+
Sbjct: 154  IGKGGFNVKQLQQETGAGIHVEDATIESDERVIRVSAIEGLWNPRSQTIDAILQLQNKTS 213

Query: 1463 EISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVISKDGKPKCASAEEELV 1642
            E SEKG +TTRLLVPSS+VGC+LGQGGH+I EMRRR QADIRV SKD KPKCAS +EELV
Sbjct: 214  EFSEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKDDKPKCASEDEELV 273

Query: 1643 QISGNANVARNALSEIASRLRVRSLEGVSATAEXXXXXXXXXXXXXXXXXDXXXXXXXXX 1822
            QISGN  VA++AL+EIASRLRVR+L  V+A AE                 D         
Sbjct: 274  QISGNFGVAKDALAEIASRLRVRTLRDVNAGAETAPVGPVNGFGPARSMAD---GLPPAA 330

Query: 1823 XXXXXXXXXXXXXXXXXXREYEAPSYPVQSSGAGPAG--YPNINSSMEIKIPXXXXXXXX 1996
                              REYE    P  +    PA   Y N+N ++E KI         
Sbjct: 331  AIGPGRSGGYESFRGGGGREYE----PQNNYSVPPAAVRYSNMNGALEAKI-LNNMSSSV 385

Query: 1997 XXXXXXXXXXXXXXXAKVKLNDPQTGGSECVVEIHGSSEQMNAAQNLLHSFIASATQNFT 2176
                           A+V+L DPQTGGSE   E  GSSE + AAQ++  SF+ S+ Q+  
Sbjct: 386  TGTGGSTILNSEVSGARVRLEDPQTGGSE---EFRGSSEHLTAAQSIFQSFMPSSGQSMN 442

Query: 2177 TQPPQQAHVAPAVQSYY-AQQQESPYAAAQNYTAQQ--------HQQSSYPSAVQNYTAQ 2329
             Q     +++    SY     Q SPY    N  AQQ        HQ S Y    QN + Q
Sbjct: 443  AQQSSYQNLSVQQSSYLNMNAQRSPY---PNMNAQQSPYQNRHPHQSSPY----QNLSVQ 495

Query: 2330 QHPSPYASAAQNYGAQKQQQSPYASAAHNFDPQQQPHSH 2446
            Q P    S    Y      Q+ Y    HN+  QQ  + +
Sbjct: 496  QSPYSVTSQQVAYANINAPQTAY----HNYSAQQGAYQY 530



 Score = 95.9 bits (237), Expect = 8e-17
 Identities = 72/222 (32%), Positives = 101/222 (45%), Gaps = 1/222 (0%)
 Frame = +2

Query: 332 LPLDKRNSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDE 511
           +P   R SGF     + S++ P  G    AE    ILCP                 L+ E
Sbjct: 110 VPHGNRPSGFGPG--SLSSFPPARGAEASAEFSMKILCPAGKIGGVIGKGGFNVKQLQQE 167

Query: 512 THAKIKIDEAVPGTDERVIIIFS-SSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQH 688
           T A I +++A   +DERVI + +      PR  +                          
Sbjct: 168 TGAGIHVEDATIESDERVIRVSAIEGLWNPRSQTID------------------------ 203

Query: 689 ALLRVHERIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETG 868
           A+L++  + +E             +E   VT RLLVPS+KVGC+LG+GGHVI  +R  T 
Sbjct: 204 AILQLQNKTSEF------------SEKGTVTTRLLVPSSKVGCILGQGGHVINEMRRRTQ 251

Query: 869 ANIRILPPEHLPACAMSTDELVQISGASDVAKKALYEVSTLL 994
           A+IR+   +  P CA   +ELVQISG   VAK AL E+++ L
Sbjct: 252 ADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALAEIASRL 293


>gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica Group]
          Length = 677

 Score =  335 bits (858), Expect = 8e-89
 Identities = 197/466 (42%), Positives = 279/466 (59%), Gaps = 4/466 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            NS   K +R NS ++ G       ET+Y ILCP                ALRD T AKI+
Sbjct: 21   NSDDGKRKRLNSRHDDGTISSEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIR 80

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + +++PG DERVIIIF+ S++    +                E M+ HC AQ ALL++H+
Sbjct: 81   VADSIPGADERVIIIFNYSSQTEEAAQNISTDGF--------EDMKPHCFAQDALLKIHD 132

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IA +EDL+    HE +   + V AR+LVP N+VGCLLGKGG +IQ+LR++TGA IR+LP
Sbjct: 133  KIAADEDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLP 192

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             E+LP CA+ +DELVQISG+S + +KALYE+ST L+Q+PR   PP+              
Sbjct: 193  SENLPQCALKSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLE-----------EI 241

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGPAGNSGKASAEF 1240
                            H N                 + P   P  N     +S +A  EF
Sbjct: 242  IDASTQRKHQAPPQLPHANPMLPHLHVDHSP-----QIPLLDPYRNRPLQYHSAEAE-EF 295

Query: 1241 NMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVED-STGEADERVILVSCFDIPWNPR 1417
            ++KILC ++ IG VIGK G NV+Q++Q+TGA + V++     ++ER+I+VS  +IP +P 
Sbjct: 296  SIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPV 355

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            SPTI+A++ L    + ++E   +TTRL+VPS++VGC++G+GG +ITEMRRR  A+IRV S
Sbjct: 356  SPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRVYS 415

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSAT 1735
            K  KPK  S +EELVQ++G   +AR AL+EIASRLR R+L   S++
Sbjct: 416  KADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDGSSS 461


>ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group] gi|22128716|gb|AAM92828.1|
            putative RNA-binding protein [Oryza sativa Japonica
            Group] gi|110289325|gb|ABB47821.2| KH domain containing
            protein, expressed [Oryza sativa Japonica Group]
            gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa
            Japonica Group] gi|215694845|dbj|BAG90036.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 762

 Score =  335 bits (858), Expect = 8e-89
 Identities = 197/466 (42%), Positives = 279/466 (59%), Gaps = 4/466 (0%)
 Frame = +2

Query: 350  NSGFKKSRRNNSNYEPGAGIPNGAETVYCILCPTXXXXXXXXXXXXXXXALRDETHAKIK 529
            NS   K +R NS ++ G       ET+Y ILCP                ALRD T AKI+
Sbjct: 21   NSDDGKRKRLNSRHDDGTISSEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIR 80

Query: 530  IDEAVPGTDERVIIIFSSSTRKPRESSXXXXXXXXXXXXXXHESMQLHCPAQHALLRVHE 709
            + +++PG DERVIIIF+ S++    +                E M+ HC AQ ALL++H+
Sbjct: 81   VADSIPGADERVIIIFNYSSQTEEAAQNISTDGF--------EDMKPHCFAQDALLKIHD 132

Query: 710  RIAEEEDLYGVSDHEDNNENNVVTARLLVPSNKVGCLLGKGGHVIQRLRSETGANIRILP 889
            +IA +EDL+    HE +   + V AR+LVP N+VGCLLGKGG +IQ+LR++TGA IR+LP
Sbjct: 133  KIAADEDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLP 192

Query: 890  PEHLPACAMSTDELVQISGASDVAKKALYEVSTLLYQNPR---PPINYXXXXXXXXXXXX 1060
             E+LP CA+ +DELVQISG+S + +KALYE+ST L+Q+PR   PP+              
Sbjct: 193  SENLPQCALKSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLE-----------EI 241

Query: 1061 XXXXXXXXXXXXXXWSHRNSXXXXXXXXXXXXXXXNEFPRFGPGVNSGPAGNSGKASAEF 1240
                            H N                 + P   P  N     +S +A  EF
Sbjct: 242  IDASTQRKHQAPPQLPHANPMLPHLHVDHSP-----QIPLLDPYRNRPLQYHSAEAE-EF 295

Query: 1241 NMKILCPADKIGVVIGKGGSNVKQIQQETGANIHVED-STGEADERVILVSCFDIPWNPR 1417
            ++KILC ++ IG VIGK G NV+Q++Q+TGA + V++     ++ER+I+VS  +IP +P 
Sbjct: 296  SIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPV 355

Query: 1418 SPTIDAILQLQVHTNEISEKGIITTRLLVPSSRVGCLLGQGGHIITEMRRRCQADIRVIS 1597
            SPTI+A++ L    + ++E   +TTRL+VPS++VGC++G+GG +ITEMRRR  A+IRV S
Sbjct: 356  SPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRVYS 415

Query: 1598 KDGKPKCASAEEELVQISGNANVARNALSEIASRLRVRSLEGVSAT 1735
            K  KPK  S +EELVQ++G   +AR AL+EIASRLR R+L   S++
Sbjct: 416  KADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDGSSS 461