BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00008165
         (4304 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  2122   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1959   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1942   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1935   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1915   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1915   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1913   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1912   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1906   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1893   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1887   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...  1878   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1856   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1854   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1835   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...  1830   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1808   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...  1787   0.0  
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...  1765   0.0  
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s...  1765   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 2122 bits (5498), Expect = 0.0
 Identities = 1069/1381 (77%), Positives = 1196/1381 (86%), Gaps = 11/1381 (0%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            QFTKEPYIEDVGPRKI+SI+F++FS +E+ KAAEVQVWR  YYD  RKPIEN LLDP MG
Sbjct: 6    QFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMG 65

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            PANK+G CATC GNF  CPGH GYL L LPVYNVGY S+++DILK ICKSC+R+LL EK 
Sbjct: 66   PANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKA 125

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKPT--------CHRCRYVNGMVKKAGTMLGI 3789
             +DYLKKMR+ ++EAL+K+ L K+IV+KC           C RC Y+NG+VKKA ++LGI
Sbjct: 126  SKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGI 185

Query: 3788 VHDRSKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDR 3609
            +HDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VL+LFKRM+DEDC+LL L +R
Sbjct: 186  IHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAER 245

Query: 3608 PEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKC 3429
            PEKL++T+I VPPI IRPSVF DGG +SNEND+T RL  I++ANASL QELQ TGS SKC
Sbjct: 246  PEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKC 305

Query: 3428 LADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3249
            LA W+ LQIEVAQYINSDVRG+PL+MQ++ P  GF+QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 306  LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365

Query: 3248 TVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDG 3069
            TVISPDPNLKITEVAIPILMA++L+YPERVSHHNIEKLRQC+ NGP KYPGA  IRYPDG
Sbjct: 366  TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425

Query: 3068 SLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLR 2889
            S+  L +S RKR ADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLR
Sbjct: 426  SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485

Query: 2888 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2709
            FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545

Query: 2708 SSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNAR 2529
            SSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTPA+IKP+ELWTGKQLF+VL+RP+A 
Sbjct: 546  SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHAN 605

Query: 2528 MRVFLNLTVLEKNYSK--SGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLL 2355
            +RV+LNLTV+EK Y+K    E++CP+DGFVYFRNSEL+SGQLGKATLGNGNKDGLFSVLL
Sbjct: 606  VRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLL 665

Query: 2354 RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELI 2175
            RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG LLN QK  RIEEGYE C ELI
Sbjct: 666  RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELI 725

Query: 2174 QSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGS 1995
            Q YNKG LKLQPGC+AAQTLEAEITGVLNKIRET A VCMEELHWRNSPLIMSQCGSKGS
Sbjct: 726  QQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGS 785

Query: 1994 PINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFF 1815
            PINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRKSK P AKGFVA+SFYTGLTATEFF
Sbjct: 786  PINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFF 845

Query: 1814 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMD 1635
            FHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSI YD+TVRNA+G +VQFLYGDDGMD
Sbjct: 846  FHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905

Query: 1634 PARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDA 1455
            PARMEGK G PLN  RL+LKVKATCPA   ASLS  ++   V ++L+ H+ S A GCSDA
Sbjct: 906  PARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTS-AEGCSDA 963

Query: 1454 FKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLETC 1275
            FK  L  F+ +  + F +T+ AL L  ++ G+ N++  E  A NISGITS+QLQVFL+TC
Sbjct: 964  FKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQVFLDTC 1023

Query: 1274 ITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1095
            I+RY  KR               GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK
Sbjct: 1024 ISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1083

Query: 1094 NISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERIH 915
             ISTPIITA LEC+N+VK+AR+VKG +E+T LG+VAKS+KIV+TSR A I V LDME I 
Sbjct: 1084 RISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDMEGIQ 1143

Query: 914  ASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATLP 735
            ASQL I +  V++SIL++ R KLK QHI+VLD  KL +  P+ DRS + FELH+L+  LP
Sbjct: 1144 ASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEV-HPQGDRSTIHFELHALKNLLP 1202

Query: 734  KVIVKGISTVERAVINKD-KGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVKETLGI 558
             V+VKGI TVERAVINKD K KYNLLVEGT LQ VMGT GV GR+TTSNHIIEV++TLGI
Sbjct: 1203 TVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGI 1262

Query: 557  EAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLAS 378
            EAARKCII+EIQYTMASHGMSIDIRHMMLLADLMT++GEVLGITRFGIQKM +SVLMLAS
Sbjct: 1263 EAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1322

Query: 377  FEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNYGLDPIH 198
            FEKTADHLFNAS +GRDDKIEGVSECIIMGIPMQ+GTGILKVRQ ++QV +L+YGLDPI 
Sbjct: 1323 FEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPII 1382

Query: 197  S 195
            S
Sbjct: 1383 S 1383


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1959 bits (5074), Expect = 0.0
 Identities = 1002/1401 (71%), Positives = 1145/1401 (81%), Gaps = 31/1401 (2%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            +FTK PYIEDVGPRKIKSIQFSM S +E+ KAAEVQV++  YYDP  +PIE  LLDP MG
Sbjct: 4    KFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMG 63

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            PANKSG CATCHGNF  CPGH+GYL+L LPVYNVGY S+++DILK ICKSC+RI+L EK 
Sbjct: 64   PANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKL 123

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKPT-------CHRCRYVNGMVKKAGTMLGIV 3786
             +DYLK+MR+P+++AL+K  + K IVKKC          C RC YVNG VKKA  MLGI+
Sbjct: 124  CKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGII 183

Query: 3785 HDRSKIVDGTSEECRSAISHKKESKASFHVV-HVLNPVRVLALFKRMLDEDCELLYLRDR 3609
            HDRSKI D + EE RSAISH KESKASF+V  +VLNPV+VL+LFKRM D DCELLYL DR
Sbjct: 184  HDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDR 243

Query: 3608 PEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKC 3429
            PEKL+IT+IAVPPIPIRPSV  DG ++SNENDIT RL  I++ANASLRQEL  T +  KC
Sbjct: 244  PEKLIITNIAVPPIPIRPSVIMDG-SQSNENDITERLKRIIQANASLRQELVETNAAFKC 302

Query: 3428 LADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3249
            L  WE+LQ+EVAQYINSDVRG+P SMQ S P  GF+QR+KGK GRFRGNLSGKRVEYTGR
Sbjct: 303  LGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGR 362

Query: 3248 TVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDG 3069
            TVISPDPNLKITEVAIPI MA++LTYPERVS+HNIEKLRQCVRNGP KYPGA  +RYPDG
Sbjct: 363  TVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDG 422

Query: 3068 SLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLR 2889
            S   L    RKR ADELK+G +V+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLR
Sbjct: 423  SARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLR 482

Query: 2888 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2709
            FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 483  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 542

Query: 2708 SSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNAR 2529
            SSFLITRKD FYDRAAFSL+CSYMGDGMD +DLPTPAL+KPIELWTGKQLFSVL+RP+A 
Sbjct: 543  SSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHAS 602

Query: 2528 MRVFLNLTVLEKNYSK-----------SGESLCPNDGFVYFRNSELMSGQLGKATLGNGN 2382
            +RV+LNL V E+NYSK             E++CP+DGFVY RNSEL+ GQLGKATLGNGN
Sbjct: 603  VRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGN 662

Query: 2381 KDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEE 2202
            KDGL+SVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG+ LN +K   I  
Sbjct: 663  KDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISG 722

Query: 2201 GYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLI 2022
             Y+ CDE IQ++N+G LK +PG DAAQTLEA +T +LN IR+   KVCM+ELHWRNSPLI
Sbjct: 723  DYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLI 782

Query: 2021 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFY 1842
            MSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R SK PAAKGFVANSFY
Sbjct: 783  MSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFY 842

Query: 1841 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQ 1662
            +GLTATEFFFHTM GREGLVDTAVKTA+TGYMSRRLIKALEDLSIHYD+TVRNASG +VQ
Sbjct: 843  SGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQ 902

Query: 1661 FLYGDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDA 1482
            F+YGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  L    +++++EE+L +HD 
Sbjct: 903  FIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD- 961

Query: 1481 SPAGGCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQ 1302
             PAG CS+AFKK L  F+  +    +   R ++L    A  S +  LE +   ISGI+ +
Sbjct: 962  -PAGVCSEAFKKSLKGFLKSQT---NELDRVMKLVNNCAQKSEI--LEKVGHKISGISDR 1015

Query: 1301 QLQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPR 1122
            QL+VF+ TCI+RY SK                GEPGTQMTLKTFHFAGVASMN+T GVPR
Sbjct: 1016 QLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1075

Query: 1121 IKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIV 942
            IKEIIN AK ISTP+ITA LE D++   A+IVKG +EKTVLG+VAKS+KIV+TSR AS+V
Sbjct: 1076 IKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVV 1135

Query: 941  VTLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFE 762
            +TLDME I  ++L I A  VK+SILQ P+ KLK QH++VLD +KL ++PP ADRS++ FE
Sbjct: 1136 ITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADRSQIHFE 1194

Query: 761  LHSLRATLPKVIVKGISTVERAVI---NKDKGK---------YNLLVEGTNLQAVMGTPG 618
            LHSL+  LP V+VKGI TVER V+   NK+K           + LLVEGT LQAVMG  G
Sbjct: 1195 LHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEG 1254

Query: 617  VDGRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEV 438
            +DGR+T SNH++E+++ LGIEAARKCII EI  TM  HGM+ID RHMMLLAD+MT++GEV
Sbjct: 1255 IDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEV 1314

Query: 437  LGITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGIL 258
            LGITRFGIQKM +S+LMLASFE+TADHLFNA+ NGRDDKIEGV+ECIIMGIPMQIGTGIL
Sbjct: 1315 LGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGIL 1374

Query: 257  KVRQSVKQVVKLNYGLDPIHS 195
            KV Q V     L YG DP+ S
Sbjct: 1375 KVIQRVDPPPMLRYGPDPVLS 1395


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1942 bits (5030), Expect = 0.0
 Identities = 971/1377 (70%), Positives = 1135/1377 (82%), Gaps = 11/1377 (0%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP+IEDVG R+IKSI+FSMFSG EVR++AEVQVW +  Y+   KP+ N LLD  MG A
Sbjct: 11   TKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAA 70

Query: 4118 NKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERR 3939
            NK G C+TCHG+F  CPGHFGYL L LPV+NVG+F+ ++D+LK ICKSC+R+LL EK+R 
Sbjct: 71   NKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKDRL 130

Query: 3938 DYLKKMRNPRLEALQKSALAKQIVKKCKPT-CHRCRYVNGMVKKAGTMLGIVHDRSKIVD 3762
            ++LKKMRNP+ + LQKSA+ K++  KCK + C  C ++NG+ KK    L I+HD SK +D
Sbjct: 131  EFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLIILHDCSKTLD 190

Query: 3761 GTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLITDI 3582
            G++EE R A+SHKKE K S   V +L+P  VL+LFKRM DEDCELL L DRPEKL++T+I
Sbjct: 191  GSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGDRPEKLIVTEI 249

Query: 3581 AVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWELLQI 3402
            AVPP+PIRPSVF  GG  SNE+ IT  L +I   N+ L++ LQ  G   KC   W+ LQ+
Sbjct: 250  AVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQL 309

Query: 3401 EVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 3222
            +V +YINSD   +P S      +RG +QRLKGK GRFRGNLSGKR EYTGRTVISPDPNL
Sbjct: 310  QVVEYINSDAPSLPESQ-----HRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNL 364

Query: 3221 KITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLRYSS 3042
            +ITEVAIPILMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANFI  PDG+ +HL+Y  
Sbjct: 365  RITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLHLKYCD 424

Query: 3041 RKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2862
            R+ AA +LKYG +VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY
Sbjct: 425  RRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 484

Query: 2861 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2682
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKD 544

Query: 2681 TFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLNLTV 2502
             FYDR++FSL+CSY+GD M+ +DLPTPALIKPIELWTGKQLFSVLVRPNA  +VFLNLTV
Sbjct: 545  NFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVFLNLTV 604

Query: 2501 LEKNYSK------SGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLRDYNA 2340
             EK Y          E++CPNDGFVYFRNSEL+SGQ+GKATLGNGNKDG+FS L+RDYN+
Sbjct: 605  KEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNS 664

Query: 2339 HAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQSYNK 2160
            HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPGE LNQ+KK +I+ GY+ C +LI SY+K
Sbjct: 665  HAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSK 724

Query: 2159 GNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSPINIS 1980
            G L+LQPGC+AAQTLE  IT VLN+IRE A KVCM  LHWRNSPLIMSQCGSKGSPINIS
Sbjct: 725  GALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKGSPINIS 784

Query: 1979 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFFHTMG 1800
            QM+ACVGQQSVGGRRAPNGFIDR+LPHFP  SK PAAKGFVANSFYTGLTATEFFFHTMG
Sbjct: 785  QMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMG 844

Query: 1799 GREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDPARME 1620
            GREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNASGG+VQFLYGDDGMDPA+ME
Sbjct: 845  GREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKME 904

Query: 1619 GKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDAFKKLL 1440
            GK G PLNL++L++KV ATCP R Q +LSP E+L+I+ +KL  HDAS   GCS+ FK+LL
Sbjct: 905  GKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLL 964

Query: 1439 LDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLETCITRYD 1260
              F+  RI +  ST+RAL LDE + G+ + +F E+IAANISGI+ +QLQVFL+TC++RY 
Sbjct: 965  TYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYH 1024

Query: 1259 SKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTP 1080
             K+               GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK ISTP
Sbjct: 1025 LKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTP 1084

Query: 1079 IITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERIHASQLR 900
            IITA L  + DV SARIVKG +EK VLGEVA+++KIV+ S Q ++VV LDM+RI A  + 
Sbjct: 1085 IITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMG 1144

Query: 899  ISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATLPKVIVK 720
            ISA SV+ SIL HP+ KLK++H+ V+D  KLRI P   D+SKL +ELH L++ LPKVIVK
Sbjct: 1145 ISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVK 1204

Query: 719  GISTVERAVIN----KDKGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVKETLGIEA 552
            GI TVERAVI+    ++  +Y LLVEGTNL AVMGTPGVD  KT SNHI+EV  TLGIEA
Sbjct: 1205 GIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEA 1264

Query: 551  ARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLASFE 372
            AR+ II EIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK SVLMLASFE
Sbjct: 1265 ARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFE 1324

Query: 371  KTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNYGLDPI 201
            KTA+HLFNAS++GR+D+IEGVSECIIMGIPMQ+GTGILKVRQ +  + +  Y  DPI
Sbjct: 1325 KTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPI 1381


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1935 bits (5012), Expect = 0.0
 Identities = 964/1385 (69%), Positives = 1136/1385 (82%), Gaps = 19/1385 (1%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP+IED G R+IKSI+FSMFSG EVR++AEVQVW +  Y+   +P+ N LLD  MG A
Sbjct: 11   TKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPNGLLDTRMGAA 70

Query: 4118 NKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERR 3939
            NK G C+TCHG+F  CPGHFGYL L LPV+NVG+F+ ++D+LK ICK C+R+LL EK+R 
Sbjct: 71   NKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCSRVLLVEKDRL 130

Query: 3938 DYLKKMRNPRLEALQKSALAKQIVKKCKPT-CHRCRYVNGMVKKAGTMLGIVHDRSKIVD 3762
            ++LKKMRNP+ + LQKSA+ K++  KCK + C  C ++NG+ KK    L I+HD SK +D
Sbjct: 131  EFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLIILHDCSKTLD 190

Query: 3761 GTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLITDI 3582
            G++EE + A+SHKKE K SF  VH+L+P  VL+LFKRM DEDCELL L DRPEKL++T+I
Sbjct: 191  GSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGDRPEKLIVTEI 249

Query: 3581 AVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWELLQI 3402
            AVPP+PIRPSVF  GG  SNE+ IT  L +I   N+ L++ LQ  G   KC   W+ LQ+
Sbjct: 250  AVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQL 309

Query: 3401 EVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 3222
            +V +YINSD   +P S      +RG +QRLKGK GRFRGNLSGKR EYTGRTVISPDPNL
Sbjct: 310  QVVEYINSDAPSLPESQ-----HRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNL 364

Query: 3221 KITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLRYSS 3042
            +ITEVAIPILMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANFI   DG+ +HL+Y  
Sbjct: 365  RITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTDGTKLHLKYCD 424

Query: 3041 RKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2862
            R+ AA +LKYG +VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY
Sbjct: 425  RRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 484

Query: 2861 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2682
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKD 544

Query: 2681 TFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLNLTV 2502
             FYDR++F+L+CSY+GD M+ +DLPTPAL+KPIELWTGKQLFSVLVRPNA  +VFLNLTV
Sbjct: 545  NFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNACTKVFLNLTV 604

Query: 2501 LEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLRDYNAHAAAAC 2322
             EK YSKS E++CPNDGFVYFRNSEL+SGQ+GK TLGNGNKDG+FS+L+RDYN+HAAA+C
Sbjct: 605  KEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVRDYNSHAAASC 664

Query: 2321 MNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQSYNKGNLKLQ 2142
            MNRLAK SAR+IGNHGFSIG+DDV+PGE L+QQKK +I+EGY+ C +LI S++KG L LQ
Sbjct: 665  MNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLITSFSKGALTLQ 724

Query: 2141 PGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSPINISQMIACV 1962
            PGC+AAQTLE +IT VLNKIRE A  +CM+ LHWRNSPLIMSQCGSKGSPINISQM+ CV
Sbjct: 725  PGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSPINISQMVVCV 784

Query: 1961 GQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT---------------- 1830
            GQQSVGG RAPNGFIDR+LPHFP  SK PAAKGFVANSFY GLT                
Sbjct: 785  GQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFHTMGGIYIVL 844

Query: 1829 -ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLY 1653
             ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNASGG+VQFLY
Sbjct: 845  PATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLY 904

Query: 1652 GDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPA 1473
            GDDGMDPA+MEG+ G PLNL++L++KV ATCP R Q +LSP E+L+I+ +KL  HDAS  
Sbjct: 905  GDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSD 964

Query: 1472 GGCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAG-DSNVNFLENIAANISGITSQQL 1296
             GCS+ FK+LL DF+  RI +  ST+RAL LDE + G DS++   E+IAANISGI+++QL
Sbjct: 965  DGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGKDSSIE--ESIAANISGISAKQL 1022

Query: 1295 QVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1116
            QVFL+TC++RY SK+               GEPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1023 QVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1082

Query: 1115 EIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVT 936
            EIIN AK ISTPIITA L    DV SAR+VKG +EK VLGEVA+ +KIV+ S Q ++VV 
Sbjct: 1083 EIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNLVVK 1142

Query: 935  LDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELH 756
            LDM+RI    + ISA SV+ SIL HPR KLK++H+ V+D  KLR+ P   D+SKL +ELH
Sbjct: 1143 LDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLYELH 1202

Query: 755  SLRATLPKVIVKGISTVERAVINKDKGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEV 576
            +L++ LPKVIVKGI TVERAVI++   KY+LLVEGTNL AVMGTPGVD  KT SNHI+EV
Sbjct: 1203 NLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGTPGVDAMKTKSNHIMEV 1262

Query: 575  KETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKES 396
              TLGIEAAR+ II EIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK S
Sbjct: 1263 NRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSS 1322

Query: 395  VLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNY 216
            VLMLASFEKTA+HLFNAS++GR+D+IEGVSECIIMGIPMQ+GTGILKVRQ +  + +  Y
Sbjct: 1323 VLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKY 1382

Query: 215  GLDPI 201
              DPI
Sbjct: 1383 QPDPI 1387


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1915 bits (4962), Expect = 0.0
 Identities = 977/1389 (70%), Positives = 1130/1389 (81%), Gaps = 21/1389 (1%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            Q TK+PYIEDVGPRKIKSI+FS+FS +E+ K+AEV+V+   YY+ T+KPI+N LLDP MG
Sbjct: 9    QVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLDPRMG 68

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            P NK+G C TCHGNF  CPGH+GYL L LPVYNVGY  +V+DILK ICK C+ ILL +KE
Sbjct: 69   PPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDDKE 128

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKP--------TCHRCRYVNGMVKKAGTMLGI 3789
            RRD LKKMRNPR E L+KS L K++VK+C          TC +C Y+NGMVKK    L I
Sbjct: 129  RRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKL--QLKI 186

Query: 3788 VHDR-SKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRD 3612
             H++ ++I+D    E   AIS K+E +AS  V   L+P  V +LFK M DEDCELLYL D
Sbjct: 187  THEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLSD 242

Query: 3611 RPEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSK 3432
            RPEKLL+T I VPPI IRPSVF DGG +SNENDIT RL  I++ANASL QE+    S  K
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMS-DSSPVK 301

Query: 3431 CLADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTG 3252
             L  W  LQ+EVAQYINSDVRG+PL MQ+  P  GF QRLKGKQGRFRGNLSGKRVEYTG
Sbjct: 302  SLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 3251 RTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPD 3072
            RTVISPDPNLKITEVAIPILMAQ+LTYPERVS HNIEKLRQCVRNGP KYPGA FIR+PD
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 3071 GSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 2892
            GS + L ++SRKR ADELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2891 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2712
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2711 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNA 2532
            TSSFLITRKDTFY+RA+FSL+CSYMGD MDP DLP+PA IKP+ELWTGKQLF +L+RP +
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 2531 RMRVFLNLTVLEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLR 2352
            +MRV++NLTV EK+YS  GE++CP+DGFVYFRNSEL+SGQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2351 DYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQ 2172
            DY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PGE L +QK+  I   Y+ C++ I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2171 SYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSP 1992
             +N+G L +QPGCDAAQTLEAE+T  LNK+R+   K+CM+ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1991 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFF 1812
            INISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1811 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDP 1632
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRNAS  +VQF+YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1631 ARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDAF 1452
            ++ME K G PLN  RL++KVKATCP   + SLS SE+  IV E+L  HD +P GGCS+AF
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 1451 KKLLLDFVHKRI-DMFSSTKRALQL-DEKYAGDSNVNFLENIAANISGITSQQLQVFLET 1278
            +  L DF+ K + +   + + +L L +E+Y GD    +LE IA NISGIT +QLQVFL T
Sbjct: 962  RSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDR-GYLEKIALNISGITKRQLQVFLNT 1020

Query: 1277 CITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1098
            CI+RY  KR               GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1021 CISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1080

Query: 1097 KNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERI 918
            K I+TPIIT  L    ++ +AR++K  +EKT+LG+VAKS+KIV+ SR ASI ++LDME I
Sbjct: 1081 KKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETI 1140

Query: 917  HASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATL 738
              SQL I AY+VKQSILQ  + KLK   I+VL+ +KL +  P+A++ KL FELH L+  L
Sbjct: 1141 QVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKL 1199

Query: 737  PKVIVKGISTVERAVINKDKGK----------YNLLVEGTNLQAVMGTPGVDGRKTTSNH 588
            P V+VKGI+TV+RAV+NK++ K          Y LLVEGT L AVMG  GVDGR T SNH
Sbjct: 1200 PAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTKSNH 1259

Query: 587  IIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQK 408
            I+EV+ TLGIEAAR  II EI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G+QK
Sbjct: 1260 IMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHGVQK 1319

Query: 407  MKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVV 228
            MK+SVLMLASFEKT DHLFNAS NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQ V+Q V
Sbjct: 1320 MKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVEQ-V 1378

Query: 227  KLNYGLDPI 201
            +LNY  DPI
Sbjct: 1379 ELNYQPDPI 1387


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1915 bits (4961), Expect = 0.0
 Identities = 973/1394 (69%), Positives = 1122/1394 (80%), Gaps = 31/1394 (2%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGP 4122
            FTK+PYIEDVGPRKIKS+QF+ FSGAE+ K AEVQV++  YYD TRKPI+  LLDP MGP
Sbjct: 11   FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70

Query: 4121 ANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKER 3942
            ANK   CATCH NF  CPGH+GY+NL LPV+NVGYF+++++ILK ICKSC+RILL EK  
Sbjct: 71   ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130

Query: 3941 RDYLKKMRNPRLEALQKSALAKQIVKKCKPT--------CHRCRYVNGMVKKAGTMLGIV 3786
            +D+L+KMRNP+LEAL+K  L K+I+KKC           C RC Y+NG VKKA +MLGI+
Sbjct: 131  KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGIL 190

Query: 3785 HDRSKIVDG--TSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRD 3612
            H R++  D    SE+ R+  +   +         +LNP RVL LF+RM DEDCELL+L +
Sbjct: 191  HYRARSKDAGVVSEDLRAPYNVSND---------ILNPFRVLCLFQRMSDEDCELLFLSN 241

Query: 3611 RPEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSK 3432
            RPEKL+IT++ VPPI IRPSV  DG ++SNENDIT RL  I++ NAS+ QEL  + S +K
Sbjct: 242  RPEKLIITNVLVPPIAIRPSVIMDG-SQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 3431 CLADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTG 3252
            CL  W++LQ EVAQ INSDVRGIP SMQ S P  GF+QRLKGKQGRFRGNL GKRVE+TG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 3251 RTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPD 3072
            RTVISPDPNLKITEVA+PI MA++LTYPERV+ HNIEKLRQCV NGP KYPGA  +R+ D
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 3071 GSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 2892
            GS+  L  S RKR ADELKYG IVERHLEDGDVVLFNRQPSLHRMSIM HR R+MPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 2891 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2712
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 2711 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNA 2532
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTPAL+KPIELWTGKQLFSVLVRP+A
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 2531 RMRVFLNLTVLEKNYS------KSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGL 2370
             M+V+LNLTV EK+YS      K  E++CPNDGFVYFRNSEL+SGQ+GKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 2369 FSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEA 2190
            +SVLLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L ++K+  I EGY  
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRD 720

Query: 2189 CDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQC 2010
            CD+ I  +N GNL  + GCDAAQ+LE++IT +LN IRE  A VCM+ LHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 2009 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT 1830
            GSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF RK+K PAAKGFVANSFY+GLT
Sbjct: 781  GSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLT 840

Query: 1829 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYG 1650
            ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYD +VRNA G +VQF YG
Sbjct: 841  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYG 900

Query: 1649 DDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAG 1470
            DDGMDPA+MEGKSG PLN ERL+LK KATCP+     LSPSE    VE++L + DASP  
Sbjct: 901  DDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPEC 960

Query: 1469 GCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGD---------SNVNFLENIAANIS 1317
            GCS AF   L  F++K ++    +   L  D + A D          N+     +  NI+
Sbjct: 961  GCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRNKVVQNIA 1020

Query: 1316 GITSQQLQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVT 1137
            G+T +QLQVFL+TC++RY +K+               GEPGTQMTLKTFHFAGVASMNVT
Sbjct: 1021 GVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1080

Query: 1136 LGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSR 957
            LGVPRIKEIINGAK ISTPI+TA L  D++V  AR+VK  +EKT LG++AK ++IVM+SR
Sbjct: 1081 LGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSR 1140

Query: 956  QASIVVTLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRS 777
             A I + LDME+I  ++L + A  VKQ+IL  P+ KLK +HI VLDD+KLR+LP +ADR+
Sbjct: 1141 SALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRN 1200

Query: 776  KLQFELHSLRATLPKVIVKGISTVERAVINKDKG------KYNLLVEGTNLQAVMGTPGV 615
            KL F LH L+  LP V+VKGI TV RAVI ++K       K++LLVEGT LQAVMGT GV
Sbjct: 1201 KLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTEGV 1260

Query: 614  DGRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVL 435
            DG  T SNHIIEV++ LGIEAARKCII EI+YTM SHGMSIDIRHMMLL DLMT++GEVL
Sbjct: 1261 DGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVL 1320

Query: 434  GITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILK 255
            GITRFGIQKM +SVLMLASFEKTADHLFNAS NGRDDKIEGVSEC+IMGIPM +GTG+LK
Sbjct: 1321 GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLK 1380

Query: 254  VRQSVKQVVKLNYG 213
            VRQ V    +L YG
Sbjct: 1381 VRQRVSVPQQLPYG 1394


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1913 bits (4955), Expect = 0.0
 Identities = 976/1389 (70%), Positives = 1126/1389 (81%), Gaps = 21/1389 (1%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            Q TK+PYIEDVGPRKIKSI+FS+FS +E+ K AEV+V+   YY+ T+KPI+N LLDP MG
Sbjct: 9    QVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLDPRMG 68

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            P NKSG C TCHGNF  CPGH+GYL L LPVYNVGY  +V+DILK ICK C+ ILL +KE
Sbjct: 69   PPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDDKE 128

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKP--------TCHRCRYVNGMVKKAGTMLGI 3789
            RRD LKKMRNPR E L+KS L K++VK+C          TC +C Y+NGMVKK    L I
Sbjct: 129  RRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL--QLKI 186

Query: 3788 VHDR-SKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRD 3612
             H++ ++I+D    E   AIS K+E +AS  V   ++P  V +LFK M DEDCELLYL D
Sbjct: 187  THEQGNRILD----EINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELLYLSD 242

Query: 3611 RPEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSK 3432
            RPEKLL+T I VPPI IRPSVF DGG +SNENDIT RL  I++ANASL QE+    S  K
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMS-DSSPVK 301

Query: 3431 CLADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTG 3252
             L  W  LQ+EVAQYINSDVRG+PL MQ   P  GF QRLKGKQGRFRGNLSGKRVEYTG
Sbjct: 302  SLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 3251 RTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPD 3072
            RTVISPDPNLKITEVAIPILMAQ+LTYPERVS HNIEKLRQCVRNGP KYPGA FIR+PD
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 3071 GSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 2892
            G+ M L +SSRKR ADELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 422  GNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2891 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2712
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2711 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNA 2532
            TSSFLITRKDTFY+RA+FSL+CSYMGD MDP DLP+PA IKP+ELWTGKQLF VL+RP +
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRPYS 601

Query: 2531 RMRVFLNLTVLEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLR 2352
            +MRV++NLT+ EK+YS  GE++C +DGFVYFRNSEL+SGQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2351 DYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQ 2172
            DY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PGE L +QK+  I   Y+ C++ I 
Sbjct: 662  DYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2171 SYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSP 1992
             +N+G L +QPGCDAAQTLEAE+T  LNK+R+   K+CM+ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1991 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFF 1812
            INISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1811 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDP 1632
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRNAS  +VQF+YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1631 ARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDAF 1452
            +RME K G PLN  RL++KVKATCP   + SLS SE+  IV E+L  HD +P GGCS+AF
Sbjct: 902  SRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 1451 KKLLLDFVHKRI-DMFSSTKRALQL-DEKYAGDSNVNFLENIAANISGITSQQLQVFLET 1278
            +  L DF+ K + +   + + +L L +E+Y GD    +LE I  NISGIT +QLQVFL T
Sbjct: 962  RASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDR-GYLEKIVLNISGITKKQLQVFLNT 1020

Query: 1277 CITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1098
            CI+RY  KR               GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1021 CISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1080

Query: 1097 KNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERI 918
            K I+TPIITA L    ++ +AR++K  +EKT+LG+VAKS+KIV+ SR ASI ++LDME I
Sbjct: 1081 KKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETI 1140

Query: 917  HASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATL 738
              SQL I AY+VKQSILQ  + KLK   I+VL+ +KL +  P+A++ KL FELH L+  L
Sbjct: 1141 QVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKL 1199

Query: 737  PKVIVKGISTVERAVINKDKGK----------YNLLVEGTNLQAVMGTPGVDGRKTTSNH 588
            P V+VKGI+TV+RAV+NK++ K          Y LLVEGT L AVMG  GVDGR T SNH
Sbjct: 1200 PAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTKSNH 1259

Query: 587  IIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQK 408
            I+EV+ TLGIEAAR  II EI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G+QK
Sbjct: 1260 IMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHGVQK 1319

Query: 407  MKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVV 228
            MK+SVLMLASFEKT DHLFNAS NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQ V+  V
Sbjct: 1320 MKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVEH-V 1378

Query: 227  KLNYGLDPI 201
            +LNY  DP+
Sbjct: 1379 ELNYQPDPM 1387


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1912 bits (4954), Expect = 0.0
 Identities = 986/1400 (70%), Positives = 1117/1400 (79%), Gaps = 31/1400 (2%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGP 4122
            FTK+PYIEDVGPRKI+SIQFSM S +E+ KAAEVQV++  YY   R PIE  LLDP MGP
Sbjct: 14   FTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRMGP 73

Query: 4121 ANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKER 3942
            ANKS  CATCHG F++CPGH+GYL L LPVYNVGY S+++DILK ICK C+R+LL EK  
Sbjct: 74   ANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLEEKLC 133

Query: 3941 RDYLKKMRNPRLEALQKSALAKQIVKKCKPT------CHRCRYVNGMVKKAGTMLGIVHD 3780
            +DYLKKMRNP++EAL+K+ L K IVKKC         C RC Y+NGMVKKA  +LGI+HD
Sbjct: 134  KDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGIIHD 193

Query: 3779 RSKIVDGTSEECRSAISHKKESKASFHVV-HVLNPVRVLALFKRMLDEDCELLYLRDRPE 3603
            RSK+ +   +E  SAI+H KESKA+ +V  ++LNPV VL LFKRM D DCE+LYL +RPE
Sbjct: 194  RSKVTESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPE 252

Query: 3602 KLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLA 3423
            KL+IT+IAVPPI IRPSV  DG ++SNENDIT RL  I++ NASL+QEL    S  K LA
Sbjct: 253  KLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKSLA 311

Query: 3422 DWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTV 3243
             WE LQ+EVAQYINSDVRG+P SMQ + P  GF+QRLKGKQGRFRGNLSGKRVEYTGRTV
Sbjct: 312  GWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 371

Query: 3242 ISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSL 3063
            ISPDPNLKITEVAIPI MA++LTYPERVS HNIEKLRQC++NGP KYPGA  IRYPDG+ 
Sbjct: 372  ISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTA 431

Query: 3062 MHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 2883
              L    R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLRFN
Sbjct: 432  RVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 491

Query: 2882 ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 2703
            ESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 492  ESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSS 551

Query: 2702 FLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMR 2523
            FLITRKDTFYDRAAFSLMC YMGDGMD VDLPTPA++KP+ELWTGKQLFSVL+RP+A MR
Sbjct: 552  FLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMR 611

Query: 2522 VFLNLTVLEKNYSKS-----------GESLCPNDGFVYFRNSELMSGQLGKATLGNGNKD 2376
            V++NLTV EK YS              E++CPNDGFVYFRNSEL+SGQLGKATLGNGNKD
Sbjct: 612  VYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKD 671

Query: 2375 GLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGY 2196
            GL+SVLLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP + L+ +K   I E Y
Sbjct: 672  GLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENY 731

Query: 2195 EACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMS 2016
            E C+  I+ YN+G L+L+PGCDAAQTLEA IT +LN+IRE A K CM  L WRNSPLIMS
Sbjct: 732  EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMS 791

Query: 2015 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTG 1836
            QCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK+K PAAKGFVANSFY+G
Sbjct: 792  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSG 851

Query: 1835 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFL 1656
            L+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD++VRNA G +VQFL
Sbjct: 852  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFL 911

Query: 1655 YGDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASP 1476
            YGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  LSP +V  IVE++L  +    
Sbjct: 912  YGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGKE- 970

Query: 1475 AGGCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQL 1296
               CS+AF   L  F   + D      + ++  E    D     LE +    SGIT +QL
Sbjct: 971  --SCSEAFLNSLRKFFEGQQDKLD---KKIKFVEDIGWDDKSQILEEVTHKTSGITEKQL 1025

Query: 1295 QVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1116
            +VF++TC +RY  KR               GEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1026 EVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 1085

Query: 1115 EIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVT 936
            EIINGAK ISTPIITA LEC+++  +AR+VKG +EKT+LG+VAKS+KIVMTSR ASIV+ 
Sbjct: 1086 EIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIA 1145

Query: 935  LDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELH 756
            LDME I  + L I+A  VK+SI+Q P+ KLK QHI+VLD +KL I PP  D+SK+ FEL+
Sbjct: 1146 LDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELY 1204

Query: 755  SLRATLPKVIVKGISTVERAVI------------NKDKGKYNLLVEGTNLQAVMGTPGVD 612
            SL+  LP VIVKGI TVER VI            N +K KY LLVEGT LQAVMG  G+D
Sbjct: 1205 SLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGID 1264

Query: 611  GRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLG 432
            G KT SNHI EV++TLGIEAAR CII EI  TM +HGMSID RHMMLLADLMT++GEVLG
Sbjct: 1265 GCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLG 1324

Query: 431  ITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKV 252
            ITRFGIQKM +SVLMLASFEKTADHLFNAS NGRDD+IEGVSECIIMGIPM +GTGILK+
Sbjct: 1325 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKI 1384

Query: 251  RQSVKQVVKLNYGL-DPIHS 195
            RQ       L YG  DPI S
Sbjct: 1385 RQRDAVPPMLKYGAPDPIMS 1404


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score = 1906 bits (4938), Expect = 0.0
 Identities = 957/1393 (68%), Positives = 1131/1393 (81%), Gaps = 25/1393 (1%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP+IEDVG R+IKSI+FS+ SG+E+RK+AEVQVW +  Y+   KP+ N LLD  MG A
Sbjct: 11   TKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPNGLLDMRMGLA 70

Query: 4118 NKSGI---CATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEK 3948
            +K      C+TCHG F  CPGHFGYL L LPV+NVG+F+ ++D+LK ICK C+R+LL+EK
Sbjct: 71   SKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCSRVLLAEK 130

Query: 3947 ERRDYLKKMRNPRLEALQKSALAKQIVKKCKPTC-HRCRYVNGMVKKAGTMLGIVHDRSK 3771
            +RR++LKKMRNPR +ALQKSA+ K++  KCK TC  RC Y NG+VKK    L ++HD SK
Sbjct: 131  DRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRVGLIVIHDCSK 190

Query: 3770 IVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLI 3591
            I+DG +EE ++A+ HKKE K S   V +L+P   L+LF+RM+DEDCELL L DRPEKL++
Sbjct: 191  ILDGHTEELKNALQHKKE-KVSTSSVRMLDPATALSLFRRMVDEDCELLNLGDRPEKLIV 249

Query: 3590 TDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWEL 3411
            T+IAVPP+PIRPSV       SNE+ ITA L +I+  N+ L++ LQ  G  SKC   W+ 
Sbjct: 250  TEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGLFSKCFDCWQQ 309

Query: 3410 LQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPD 3231
            LQ++V +++NSD   +P S      +RG +QRLKGK GRFRGNLSGKR EYTGRTVISPD
Sbjct: 310  LQLQVVEFVNSDAPCLPESQ-----HRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPD 364

Query: 3230 PNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLR 3051
            PNL+ITEVAIP+LMA+VLTYPERVS++N+EKLRQC+RNGP K+PGANFI  PDG+ + L+
Sbjct: 365  PNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGTKLSLK 424

Query: 3050 YSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVC 2871
            Y  R+  A +LK GY VERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVC
Sbjct: 425  YGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVC 484

Query: 2870 NPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLIT 2691
            NPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+T
Sbjct: 485  NPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVT 544

Query: 2690 RKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLN 2511
            RKD FYDR++F+L+CSY+GD M+ +DLPTPALIKPIELWTGKQLFSVLVRPNAR +VFLN
Sbjct: 545  RKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNARTKVFLN 604

Query: 2510 LTVLEKNYSKSGE----------------SLCPNDGFVYFRNSELMSGQLGKATLGNGNK 2379
            L V EK YSK  E                ++CPNDG+VYFRNSEL+SGQ+GKATLGNGNK
Sbjct: 605  LAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNK 664

Query: 2378 DGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEG 2199
            DG++SVLLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPGE LN+QKK +I+EG
Sbjct: 665  DGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKKIDEG 724

Query: 2198 YEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIM 2019
            Y+ C +LI  + KG L L PGC+AAQTLE +ITGVLN+IR  A  VCM+ LHWRNSPLIM
Sbjct: 725  YKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWRNSPLIM 784

Query: 2018 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYT 1839
            SQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFP  SK PAAKGFVANSFYT
Sbjct: 785  SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVANSFYT 844

Query: 1838 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQF 1659
            GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNASGG+VQF
Sbjct: 845  GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQF 904

Query: 1658 LYGDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDAS 1479
            LYGDDGMDPA+MEGK G PLNL++L++KV ATCP R   +LSP ++ +++E+KL +H  S
Sbjct: 905  LYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKLTQHKTS 964

Query: 1478 PAGGCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQ 1299
              GGCS+ FK+ L  F+ +RI +   T++AL LDEK+ G ++    E IAANISGI+++Q
Sbjct: 965  SDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEIIAANISGISAKQ 1024

Query: 1298 LQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1119
            LQVFL+TC +RY+SK                GEPGTQMTLKTFHFAGVASMNVTLGVPRI
Sbjct: 1025 LQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1084

Query: 1118 KEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVV 939
            KEIIN AK ISTPIIT  L    DV SARIVKG +EK VLGEVA ++KIV+ S Q ++VV
Sbjct: 1085 KEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQPNLVV 1144

Query: 938  TLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFEL 759
             LDM+ I A  + ISA SV+ SIL HP+ KLK++H+ V+D  KLRI P   D+SKLQ EL
Sbjct: 1145 KLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQLEL 1204

Query: 758  HSLRATLPKVIVKGISTVERAVINKDK-----GKYNLLVEGTNLQAVMGTPGVDGRKTTS 594
            H+L+A LPKVIVKGI TVER VI++ K      KYNLLVEGTNL AVMGTPGVD R T S
Sbjct: 1205 HNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVDARNTKS 1264

Query: 593  NHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGI 414
            NHI+E+  TLGIEAAR+ II EIQYTM SHGM+ID+RHMMLLADLMTYKGEVLGITR+GI
Sbjct: 1265 NHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGITRYGI 1324

Query: 413  QKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQ 234
             KMK SVLMLASFEKT++HLFNAS++GR+D+IEGVSECIIMGIPMQ+GTGILKVRQ +  
Sbjct: 1325 AKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQRLDH 1384

Query: 233  VVKLNYGLDPIHS 195
            + +L Y  DPI S
Sbjct: 1385 LPELKYQPDPILS 1397


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1893 bits (4904), Expect = 0.0
 Identities = 950/1387 (68%), Positives = 1121/1387 (80%), Gaps = 19/1387 (1%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP+IEDVG R+IKSI+FS+ SG+E+RK+AEVQVW N  Y    KP+ N LLDP MG  
Sbjct: 11   TKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPNGLLDPRMGVP 70

Query: 4118 NKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERR 3939
            NK   C+TCHG F+ CPGHFGYL L LPV+NVG+F+ ++D+LK ICKSC+R+LL EK+RR
Sbjct: 71   NKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLFEKDRR 130

Query: 3938 DYLKKMRNPRLEALQKSALAKQIVKKCKPTC-HRCRYVNGMVKKAGTMLGIVHDRSKIVD 3762
            ++LKKMRNPR +ALQKSA  K++  KCK +C  RC Y NG+VKK    L +VHD SK++D
Sbjct: 131  EFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLIVVHDCSKVLD 190

Query: 3761 GTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLITDI 3582
            G +EE ++A+ +KKE K S + V VL+P  VL+LF+RM DEDCELL L DRPEKL++++I
Sbjct: 191  GHTEELKNALQNKKE-KVSANSVRVLDPATVLSLFRRMTDEDCELLNLGDRPEKLIVSEI 249

Query: 3581 AVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWELLQI 3402
            AVPP+PIRPSV       SNE+ IT  L +I+  N+ L++ L   G  +KC   W+ LQ+
Sbjct: 250  AVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQL 309

Query: 3401 EVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 3222
            +V +Y+NSD   +P S      +RG +QRLKGK GRFRGNLSGKR EYTGRTVISPDPNL
Sbjct: 310  QVVEYVNSDAPCLPDSQ-----HRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNL 364

Query: 3221 KITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLRYSS 3042
            KITEVAIP+LMA+VLTYPERVS++NIEKLRQC+RNGP KYPGANF+  PDG    L+Y  
Sbjct: 365  KITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQSLKYGD 424

Query: 3041 RKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2862
            R+  A +LK G IVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY
Sbjct: 425  RRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 484

Query: 2861 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2682
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKD 544

Query: 2681 TFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLNLTV 2502
            TFYDR++F+L+CSY+GD M+ +DLPTPALIKPIELWTGKQLFSVLVRPNA  RVFLNL V
Sbjct: 545  TFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRVFLNLAV 604

Query: 2501 LEKNYSKSG-------------ESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSV 2361
             EK YSK               E++CPNDG+VYFRNSEL+SGQ+GKATLGNGNKDGL+SV
Sbjct: 605  QEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKDGLYSV 664

Query: 2360 LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDE 2181
            LLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPGE LN+QKK  I+ GY+ C +
Sbjct: 665  LLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGGYKKCHD 724

Query: 2180 LIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSK 2001
            LI  + KG L L PGC+AAQTLE  ITGVLN+IR  A  VCM+ LHWRNSPLIMSQCGSK
Sbjct: 725  LISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIMSQCGSK 784

Query: 2000 GSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATE 1821
            GSPINISQM+ACVGQQSVGGRRAP+GF++R+LPHFP  SK PAAKGFVANSFYTGLTATE
Sbjct: 785  GSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTGLTATE 844

Query: 1820 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDG 1641
            FFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNASGG+VQFLYGDDG
Sbjct: 845  FFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDG 904

Query: 1640 MDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCS 1461
            MDPA+MEGK G+PLNL++L++KV ATCP R   +LSP  + +++E+KL +HD S  GGCS
Sbjct: 905  MDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTSSDGGCS 964

Query: 1460 DAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLE 1281
            + FKK L +F+ KRI++   T+RAL L E +    +    E++AA ISGI+++QLQVFL+
Sbjct: 965  EEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQLQVFLD 1024

Query: 1280 TCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 1101
            TC++RY SK+               GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 
Sbjct: 1025 TCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1084

Query: 1100 AKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMER 921
            A+ ISTPIITA L    DV SARIVKG +EK VLGEVA +++IV+ S Q +++V LDM+ 
Sbjct: 1085 ARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLDMQL 1144

Query: 920  IHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRAT 741
            I +  + ISA SV+ SIL HP+ KLK++H+ V+D  KLRI P   D+ KLQ ELH+L++ 
Sbjct: 1145 IESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNLKSI 1204

Query: 740  LPKVIVKGISTVERAVINKDKGK-----YNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEV 576
            LPKVIVKGI TVER VI++ K K     Y LLVEGTNL AVMGTPGVD  KT SNHI+E 
Sbjct: 1205 LPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKSNHIMET 1264

Query: 575  KETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKES 396
             +TLGIEAAR+ II EIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK S
Sbjct: 1265 NQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGIAKMKSS 1324

Query: 395  VLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNY 216
            VLMLASFEKT++HLFNAS++GR+D+IEGVSECIIMGIPMQ+GTGILKVRQ +  V +  Y
Sbjct: 1325 VLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEFKY 1384

Query: 215  GLDPIHS 195
              DPI S
Sbjct: 1385 QPDPILS 1391


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1887 bits (4889), Expect = 0.0
 Identities = 958/1376 (69%), Positives = 1114/1376 (80%), Gaps = 9/1376 (0%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTR-KPIENALLDPHMG 4125
            FTK+P++ED+GPRKIKS+QF M SG E+ KAAE QV++  YY+ T  KP E+ +LD  MG
Sbjct: 10   FTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLDTRMG 69

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
             + KSG CATC G+F +CPGHFGYL L LPV++VGYF + I +L+ ICKSCARILL E+E
Sbjct: 70   FSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILLFEEE 129

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKPT--CHRCRYVNGMVKKAGTMLGIVHDRSK 3771
            R+ +LKK+RNPR E  QK+   K+++ KCK    C RC   NG+VKKAG    I HDRSK
Sbjct: 130  RKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPTFRISHDRSK 189

Query: 3770 I-VDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLL 3594
               D  ++EC++AIS  K S + F++V  L P R LALF+RM+DEDC+LLYL DRPEKL+
Sbjct: 190  ANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLYLYDRPEKLI 249

Query: 3593 ITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWE 3414
            IT IAVPP  IRP+     G+R NEN++T +L  I++ N +L   +         +  W 
Sbjct: 250  ITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDHVNKGNLPQYYMDTWV 307

Query: 3413 LLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISP 3234
            LLQ+ VA YINS++  +PL+ Q S    G +QRLKGKQGRFR NL GKRV++TGRTVISP
Sbjct: 308  LLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRTVISP 367

Query: 3233 DPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHL 3054
            DPNLKITEVAIP LMAQ+LTY ERV+ HNIEKLRQCVRNGP KYPGANF+    G  + L
Sbjct: 368  DPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFV-ISGGDTLSL 426

Query: 3053 RYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV 2874
            RY ++KR ADELK+G  VERHLEDG++VLFNRQPSLHRMSIM HRAR+MPWRTLRFNESV
Sbjct: 427  RYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESV 486

Query: 2873 CNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 2694
            CNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVASTQDFLTSS+LI
Sbjct: 487  CNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTSSYLI 546

Query: 2693 TRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFL 2514
            TRKDTFYDRA FSLMCSYMGDGM+ +DLPTPAL+KP+ELWTGKQLFSVL+RP+A M+V++
Sbjct: 547  TRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHMKVYV 606

Query: 2513 NLTVLEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLRDYNAHA 2334
            NL+++EKNYSK GE++C NDGFVY RNSEL+SGQLGKATLGNGNKDGLFSVLLRDYN+HA
Sbjct: 607  NLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDYNSHA 666

Query: 2333 AAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQSYNKGN 2154
            AA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L +QK+ +I+ GY  CD  I +Y+KG 
Sbjct: 667  AASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAYDKGK 726

Query: 2153 LKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSPINISQM 1974
            L L+PGC+AAQTLEAEIT VLN IR+ AAKVCMEELHWRNSPLIMSQCGSKGSPINISQM
Sbjct: 727  LSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPINISQM 786

Query: 1973 IACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFFHTMGGR 1794
            IACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFYTGLTA EFFFHTMGGR
Sbjct: 787  IACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHTMGGR 846

Query: 1793 EGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDPARMEGK 1614
            EGLVDTAVKTADTGY+SRRLIK+LEDLS HYDDTVRN+SG ++QF YGDDGMDPA+MEGK
Sbjct: 847  EGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAKMEGK 906

Query: 1613 SGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDAFKKLLLD 1434
            SGVPLNL+RL++K+KATCPA   ASLSPSE+  IV ++L +HD +P  GCS AFK+ L +
Sbjct: 907  SGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEELSN 966

Query: 1433 FVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLETCITRYDSK 1254
            F+ KR+D    T+  L LDE        + LE++AANISGI+ QQL+VFLETCI+RY  K
Sbjct: 967  FIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCISRYHLK 1026

Query: 1253 RXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTPII 1074
            R               GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+  +K ISTPII
Sbjct: 1027 RIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKKISTPII 1086

Query: 1073 TATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERIHASQLRIS 894
            TATL CDND KSARIVKG +EKT+LGEVAK++KI +T  QASI +TLDM+RI A Q+ I 
Sbjct: 1087 TATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEALQMAID 1146

Query: 893  AYSVKQSILQH-----PRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATLPKV 729
            A +V  SI ++      RTKLK +    L D KL+IL PE  R ++ + LH L++ LPK+
Sbjct: 1147 AKTVADSISENLKAKVSRTKLKVKPTFTLPD-KLKILLPEIGRKEVLYSLHLLQSLLPKI 1205

Query: 728  IVKGISTVERAVINKDKGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVKETLGIEAA 549
            IVKGI TVERAVIN  KGK NLLVEGTNL AVMGTPGVDGR TTSNHI+EV+ TLGIEAA
Sbjct: 1206 IVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAA 1265

Query: 548  RKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLASFEK 369
            RK II EIQYTM SHGMSID+RHMMLLADLMT++G VLGI RFGI KMKESVLMLASFE+
Sbjct: 1266 RKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLMLASFER 1325

Query: 368  TADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNYGLDPI 201
            TAD LF+A+  GR D I GVSECIIMG+PMQIGTGIL V+Q  +Q+ KL YG DPI
Sbjct: 1326 TADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPDPI 1381


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1878 bits (4864), Expect = 0.0
 Identities = 947/1389 (68%), Positives = 1115/1389 (80%), Gaps = 21/1389 (1%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP++EDVG R+IKS++FSMFSG E+R++AE QVW N  Y    KP+ N LLDP MG A
Sbjct: 11   TKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPNGLLDPRMGAA 70

Query: 4118 NKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERR 3939
            NK G CATCHG++  CPGHFGYL LVLPV+NVG+F++++D+LKSICK C+RILL EK++R
Sbjct: 71   NKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCSRILLHEKDQR 130

Query: 3938 DYLKKMRNPRLEALQKSALAKQIVKKCKPT-CHRCRYVNGMVKKAGTMLGIVHDRSKIVD 3762
            ++LKKMRNPRLE L K+AL K++  KCK + C  C Y+NG+ KK    L IVHD SK +D
Sbjct: 131  EFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLLIVHDCSKTLD 190

Query: 3761 GTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLITDI 3582
            G++EE RSA+SHKKE K S   VH L+P  VL+LFKRM DEDCELL L DRPEKL+IT+I
Sbjct: 191  GSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGDRPEKLIITEI 249

Query: 3581 AVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWELLQI 3402
            AVPP+PIRPSVF  GG  SNE+ IT  L  I+  N+ L+  LQ    + KC   W+LLQ+
Sbjct: 250  AVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMKCFDCWQLLQL 309

Query: 3401 EVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNL 3222
            +V +YINSD   +     +    RG +QRLKGK GRFRGNLSGKR EYTGRTVISPDPNL
Sbjct: 310  QVVEYINSDAPSL-----TDPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNL 364

Query: 3221 KITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLRYSS 3042
            +ITEVAIP+LMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANF+  PDG+ +HL+Y  
Sbjct: 365  RITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKLHLKYCD 424

Query: 3041 RKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2862
            R+ AA +LKYG IVERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY
Sbjct: 425  RRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 484

Query: 2861 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2682
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 544

Query: 2681 TFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLNLTV 2502
             FYDR+ F+L+CSY+GD M+ +DLPTPA+IKP+ELWTGKQLFSVLVRPNA  +V+LNLTV
Sbjct: 545  NFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKVYLNLTV 604

Query: 2501 LEKNYSKS-----------GESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLL 2355
             EK Y K             E++CPNDG+VYFRNSEL+SGQ+GK TLGNGNKDG+FSVL+
Sbjct: 605  EEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDGMFSVLV 664

Query: 2354 RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELI 2175
            RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPGE LNQ+KK  I++GY  C +LI
Sbjct: 665  RDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYTECHDLI 724

Query: 2174 QSYNKG--NLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSK 2001
              Y+KG    +L PGC+ AQTLE  ++ +LN++RE A + CM  LHWRNSPLIMSQCGSK
Sbjct: 725  AVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIMSQCGSK 784

Query: 2000 GSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATE 1821
            GSPINISQM+ CVGQQSVGGRRAP+GFIDR+LPHFP  SK PAAKGFVANSFYTGLTATE
Sbjct: 785  GSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYTGLTATE 844

Query: 1820 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDG 1641
            FFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNAS G+VQF+YGDDG
Sbjct: 845  FFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGDDG 904

Query: 1640 MDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCS 1461
            MDP +MEGK G PLNL++L++KVKATCP R    LSP  +++++ +KL   D S +GGCS
Sbjct: 905  MDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMS-SGGCS 963

Query: 1460 DAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLE 1281
            D FK+LL  F   RI M  ST+R L LDE + G  + +  E IAANISGI+++QLQVFL+
Sbjct: 964  DKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERIAANISGISAKQLQVFLD 1023

Query: 1280 TCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 1101
            TC++RY SK                GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 
Sbjct: 1024 TCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1083

Query: 1100 AKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMER 921
            AKNISTPIITA L    D+  A  VK  VEK VLGEVA  +KIV+ S Q ++VV LDM+R
Sbjct: 1084 AKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVVKLDMQR 1143

Query: 920  IHA-SQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRA 744
            I A   + IS+ SV+QSI++HP+ KLK++H+ V+D  KLRI P   D+SKLQ ELH+L++
Sbjct: 1144 IEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTLKS 1203

Query: 743  TLPKVIVKGISTVERAVIN------KDKGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHII 582
             LPKVIVKGI TVERAV+N      K   +YNLLVEGTNL  V+GTPGVD +KT SNHI+
Sbjct: 1204 MLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKTKSNHIM 1263

Query: 581  EVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMK 402
            EV +TLGIEAAR+ II EI+YT  S+ M ID RHMMLLADLMTYKGEVLGITRFGI KMK
Sbjct: 1264 EVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRFGIVKMK 1323

Query: 401  ESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKL 222
             SVLMLASFEKT +HLFNAS++GR+D+IEGVSECIIMGIPM +G+GILKVRQ +  + + 
Sbjct: 1324 SSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRLDHLPEF 1383

Query: 221  NYGLDPIHS 195
            NY  D I S
Sbjct: 1384 NYQPDAIIS 1392


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1856 bits (4807), Expect = 0.0
 Identities = 957/1390 (68%), Positives = 1109/1390 (79%), Gaps = 38/1390 (2%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGP 4122
            +TK+PYIEDVGPR+IKSIQFS  SG+++ KA+E QV    YYD  +K I   LLD  MG 
Sbjct: 10   YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69

Query: 4121 ANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKER 3942
             NK G C TC G+FT CPGHFGYLNLVLPVYNVGY S+++DILK ICKSC+R+L+ EK R
Sbjct: 70   PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129

Query: 3941 RDYLKKMRNPRLEALQKSALAKQIVKKCKPT-------CHRCRYVNGMVKKAGTMLGIVH 3783
            + YLK+MRNPR E L+K+ L K+IVKKC          C RC Y+NGMVKKAG+++GI+H
Sbjct: 130  KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189

Query: 3782 DRSKIVDGTSEECRSAISHKKESKASFHVV-HVLNPVRVLALFKRMLDEDCELLYLRDRP 3606
            DRSK++DG  EEC+SAI H +E++A   +  ++LNPVRVL+LF+RM++EDCELLYL+ RP
Sbjct: 190  DRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRP 249

Query: 3605 EKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQEL---QCTGSMS 3435
            EKL+IT IAVPPI IRPSVFT+G ++SNENDIT RL  I++ NA LR EL   + TG   
Sbjct: 250  EKLIITTIAVPPISIRPSVFTEG-SQSNENDITERLKQIIQFNAKLRLELLEGRRTGI-- 306

Query: 3434 KCLADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYT 3255
            K L  W+ LQ  V  YINSDVR IPL MQ   P  GF+QRL GKQGRFR NL+GKRVE+T
Sbjct: 307  KYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFT 365

Query: 3254 GRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYP 3075
            GRTVISPDPNLKITEVAIPI MA++LTYPERV+HHNIEKLRQCV NG  KYPGA  + YP
Sbjct: 366  GRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYP 425

Query: 3074 DGSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRT 2895
            DGS   L  + RKR A+ELK G IV RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRT
Sbjct: 426  DGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 485

Query: 2894 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2715
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA +LMGVQNNLCTPKNGEILVASTQDF
Sbjct: 486  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDF 545

Query: 2714 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPN 2535
            LTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPTP+++KPIELWTGKQLFSVL+RP+
Sbjct: 546  LTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPH 605

Query: 2534 ARMRVFLNLTVLEKNYS-------KSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKD 2376
            A +RV++NL + EKNYS       K  E++CPNDG+VYFRNSEL+SGQLGKATLGNGNKD
Sbjct: 606  ANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKD 665

Query: 2375 GLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGY 2196
            GL+S+LLRDYNA+AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L  +K   I  GY
Sbjct: 666  GLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGY 725

Query: 2195 EACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMS 2016
              C++LI  YN G L L+ GCDA QTLE EIT  LNK+RE A  VCM+ELHWRNSPLIMS
Sbjct: 726  RHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMS 785

Query: 2015 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTG 1836
            QCGSKGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPRKSK PAAKGFVANSFY+G
Sbjct: 786  QCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSG 845

Query: 1835 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFL 1656
            L+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL + YD+TV++A GG+VQFL
Sbjct: 846  LSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFL 905

Query: 1655 YGDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASP 1476
            YGDDG+DPA MEGK+GVPLN +RL++KVKATC A     LSPS++  IV+  L +H+ + 
Sbjct: 906  YGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHNGTL 965

Query: 1475 AGGCSDAFKKLLLDFV---HKRIDMFSSTKRALQLDEKYAGDSNVNFL-------ENIAA 1326
             G CS++F+K L  F+    KR++        +++ E +    NV  L       E IA 
Sbjct: 966  DGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEV-ENFENIKNVEGLTGISKNTEKIAQ 1024

Query: 1325 NISGITSQQLQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASM 1146
             +SGIT +QL+VFL+TC+ RY  KR               GEPGTQMTLKTFHFAGVASM
Sbjct: 1025 KVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1084

Query: 1145 NVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVM 966
            N+T GVPRIKEIINGAK ISTPIIT  LE +++V +ARI+KG ++KTVLG+VAKS+KIVM
Sbjct: 1085 NITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVM 1144

Query: 965  TSRQASIVVTLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEA 786
            TSR AS+ VTLDM+ I  +QL + A  V++ IL+ P+ K K Q I VL+D KL +  P  
Sbjct: 1145 TSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVF-PGG 1203

Query: 785  DRSKLQFELHSLRATLPKVIVKGISTVERAVI--------NKDKG--KYNLLVEGTNLQA 636
            DR+KL FELHSL+  LP V+VKGI TVER VI          D+G  KYN+ VEG  LQA
Sbjct: 1204 DRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQA 1263

Query: 635  VMGTPGVDGRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLM 456
            VMGT GVDGRKT SNHIIEV+ETLGIEAARKCII EI+ TM SHGMSIDIRHMMLLAD+M
Sbjct: 1264 VMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVM 1323

Query: 455  TYKGEVLGITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQ 276
            T +G VLGITRFGIQKM +SVLMLASFEKT+DHLFNAS  G+DDKIEGVSECIIMGIP+ 
Sbjct: 1324 TSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVA 1383

Query: 275  IGTGILKVRQ 246
            IGTG+LK++Q
Sbjct: 1384 IGTGVLKIQQ 1393


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1854 bits (4802), Expect = 0.0
 Identities = 969/1415 (68%), Positives = 1098/1415 (77%), Gaps = 46/1415 (3%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHM-- 4128
            FTK+PYIEDVGPRKI+SIQFSM S +E+ KAAEVQV++  YY   R PIE  LLDP M  
Sbjct: 14   FTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRMEK 73

Query: 4127 -------------GPANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKS 3987
                         GPANKS  CATCHG F++CPGH+GYL L LPVYNVGY S+++DILK 
Sbjct: 74   IIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKC 133

Query: 3986 ICKSCARILLSEKERRDYLKKMRNPRLEALQKSALAKQIVKKCKPT------CHRCRYVN 3825
            ICK C+R+LL EK  +DYLKKMRNP++EAL+K+ L K IVKKC         C RC Y+N
Sbjct: 134  ICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYIN 193

Query: 3824 GMVKKAGTMLGIVHDRSKIVDGTSEECRSAISHKKESKASFHVV-HVLNPVRVLALFKRM 3648
            GMVKKA  +LGI+HDRSK+ +   +E  SAI+H KESKA+ +V  ++LNPV VL LFKRM
Sbjct: 194  GMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRM 252

Query: 3647 LDEDCELLYLRDRPEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASL 3468
             D DCE+LYL +RPEKL+IT+IAVPPI IRPSV  DG ++SNENDIT RL  I++ NASL
Sbjct: 253  TDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASL 311

Query: 3467 RQELQCTGSMSKCLADWELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFR 3288
            +QEL    S  K LA WE LQ+EVAQYINSDVRG+P SMQ + P  GF+QRLKGKQGRFR
Sbjct: 312  QQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFR 371

Query: 3287 GNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQ 3108
            GNLSGKRVEYTGRTVISPDPNLKITEVAIPI MA++LTYPERVS HNIEKLRQC++NGP 
Sbjct: 372  GNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPD 431

Query: 3107 KYPGANFIRYPDGSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIM 2928
            KYPGA  IRYPDG+   L    R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMSIM
Sbjct: 432  KYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIM 491

Query: 2927 SHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKN 2748
             HRARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKN
Sbjct: 492  CHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKN 551

Query: 2747 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTG 2568
            GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLPTPA++KP+ELWTG
Sbjct: 552  GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTG 611

Query: 2567 KQLFSVLVRPNARMRVFLNLTVLEKNYSKS-----------GESLCPNDGFVYFRNSELM 2421
            KQLFSVL+RP+A MRV++NLTV EK YS              E++CPNDGFVYFRNSEL+
Sbjct: 612  KQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELI 671

Query: 2420 SGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG 2241
            SGQLGKATLG                      CMNRLAKLSARWIGNHGFSIGIDDVQP 
Sbjct: 672  SGQLGKATLG----------------------CMNRLAKLSARWIGNHGFSIGIDDVQPK 709

Query: 2240 ELLNQQKKARIEEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKV 2061
            + L+ +K   I E YE C+  I+ YN+G L+L+PGCDAAQTLEA IT +LN+IRE A K 
Sbjct: 710  KELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKA 769

Query: 2060 CMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1881
            CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK+K
Sbjct: 770  CMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAK 829

Query: 1880 MPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHY 1701
             PAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI Y
Sbjct: 830  EPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQY 889

Query: 1700 DDTVRNASGGVVQFLYGDDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEV 1521
            D++VRNA G +VQFLYGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  LSP +V
Sbjct: 890  DNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQV 949

Query: 1520 LRIVEEKLERHDASPAGGCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFL 1341
              IVE++L  +       CS+AF   L  F   + D      + ++  E    D     L
Sbjct: 950  SEIVEKQLAAYGKE---SCSEAFLNSLRKFFEGQQDKLD---KKIKFVEDIGWDDKSQIL 1003

Query: 1340 ENIAANISGITSQQLQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFA 1161
            E +    SGIT +QL+VF++TC +RY  KR               GEPGTQMTLKTFHFA
Sbjct: 1004 EEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1063

Query: 1160 GVASMNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKS 981
            GVASMN+T GVPRIKEIINGAK ISTPIITA LEC+++  +AR+VKG +EKT+LG+VAKS
Sbjct: 1064 GVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKS 1123

Query: 980  MKIVMTSRQASIVVTLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRI 801
            +KIVMTSR ASIV+ LDME I  + L I+A  VK+SI+Q P+ KLK QHI+VLD +KL I
Sbjct: 1124 IKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEI 1183

Query: 800  LPPEADRSKLQFELHSLRATLPKVIVKGISTVERAVI------------NKDKGKYNLLV 657
             PP  D+SK+ FEL+SL+  LP VIVKGI TVER VI            N +K KY LLV
Sbjct: 1184 FPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLV 1242

Query: 656  EGTNLQAVMGTPGVDGRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHM 477
            EGT LQAVMG  G+DG KT SNHI EV++TLGIEAAR CII EI  TM +HGMSID RHM
Sbjct: 1243 EGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHM 1302

Query: 476  MLLADLMTYKGEVLGITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECI 297
            MLLADLMT++GEVLGITRFGIQKM +SVLMLASFEKTADHLFNAS NGRDD+IEGVSECI
Sbjct: 1303 MLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECI 1362

Query: 296  IMGIPMQIGTGILKVRQSVKQVVKLNYGL-DPIHS 195
            IMGIPM +GTGILK+RQ       L YG  DPI S
Sbjct: 1363 IMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1397


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1835 bits (4753), Expect = 0.0
 Identities = 958/1386 (69%), Positives = 1100/1386 (79%), Gaps = 38/1386 (2%)
 Frame = -1

Query: 4238 MFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPANK-SGICATCHGNFTSCPGH 4062
            M SGAE+ KAAE QV    YYD TRKPI+  LLDP +GPA K S  C TC  +F  CPGH
Sbjct: 1    MMSGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGH 60

Query: 4061 FGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERRDYLKKMRNPRLEALQKSAL 3882
            FGYLNLVLPV+NVGY S+++DILK ICKSC+RIL  EK  +  LKKMRNPR+E L+KS L
Sbjct: 61   FGYLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSEL 120

Query: 3881 AKQIVKKCKPT-------CHRCRYVNGMVKKAGTMLGIVHDRSKIVDGTSEECRSAISHK 3723
             K+IVKKC          C RC  +NGMVKKAG++L I+HDR+K+VDG  EECRSAI+H 
Sbjct: 121  VKKIVKKCSSMTSNKAVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHT 180

Query: 3722 KESKASFHVV-HVLNPVRVLALFKRMLDEDCELLYLRDRPEKLLITDIAVPPIPIRPSVF 3546
            KES+A   +  ++L PV+VL+LFKR+ +EDCE+L L DRPEKL+IT+IAVPPI IRPSVF
Sbjct: 181  KESRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVF 240

Query: 3545 TDGGARSNENDITARLSTIMRANASLRQEL-QCTGSMSKCLADWELLQIEVAQYINSDVR 3369
            TDG  +SNENDIT RL  I++ANASLR EL +   S++K L  W+ LQ  VA Y+NSDVR
Sbjct: 241  TDG-LQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDVR 299

Query: 3368 GIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILM 3189
             +P +++   P  GF+QRLKGKQGRFRGNLSGKRVE+TGRTVISPDPNLKITEVAIPI M
Sbjct: 300  -VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHM 358

Query: 3188 AQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHLRYSSRKRAADELKYG 3009
            A++L+YPERVSHHNIEKLRQ V NGPQKYPGA+ +RYPDGS   L  S RK  A+EL +G
Sbjct: 359  ARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFG 418

Query: 3008 YIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNL 2829
             IV+RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMN+
Sbjct: 419  CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 478

Query: 2828 HVPQTEEARTEALMLMGV-QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL 2652
            HVPQTEEARTEAL+LMGV QNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRAAFSL
Sbjct: 479  HVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSL 538

Query: 2651 MCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFLNLTVLEKNYSK--- 2481
            MCSYM DGMD +DLPTPA++KPIELWTGKQLFSVL+RPNA +RV++NL V EK YSK   
Sbjct: 539  MCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKK 598

Query: 2480 ----SGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNR 2313
                  E++CPNDGFVY RNSEL+SGQLGKATLGNGNKDGL+S+LLRDYN HAAA CMNR
Sbjct: 599  GDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNR 658

Query: 2312 LAKLS--ARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQSYNKGNLKLQP 2139
            LAKL   ARWIGNHGFSIGIDDVQPG+ L   K   I  GY+ CD+LI+ YN+G L L+P
Sbjct: 659  LAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKP 718

Query: 2138 GCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVG 1959
            GCDA QTLE+EIT  LNK+RE A  VCM+ELHWRNSPLIMSQCGSKGS INISQM+ACVG
Sbjct: 719  GCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVG 778

Query: 1958 QQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFFHTMGGREGLVD 1779
            QQSVGGRRAP+GFIDRSLPHFPRKSK PAAKGFVANSFY+GL ATEFFFHTM GREGLVD
Sbjct: 779  QQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVD 838

Query: 1778 TAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDPARMEGKSGVPL 1599
            TAVKTADTGYMSRRLIK LEDLSI YD+TVRNASG +VQFLYGDDG+DPA MEGK GVPL
Sbjct: 839  TAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPL 898

Query: 1598 NLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAGGCSDAFKKLLLDFVHKR 1419
            NL+RL+ KVKATCP R +  LSP ++  +VE  L +HD +  G CS+AFKK L  F+   
Sbjct: 899  NLDRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSH 958

Query: 1418 IDMFSSTKRALQLDEKYAGDS--------NVNFLENIAANISGITSQQLQVFLETCITRY 1263
                 S  +     E    ++        N   +E +A  I G++ +Q++VF++TCI RY
Sbjct: 959  AKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRY 1018

Query: 1262 DSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNIST 1083
              KR               GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK IST
Sbjct: 1019 LWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKIST 1078

Query: 1082 PIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERIHASQL 903
            PIITA LE + +V +ARI KG ++KTVLG+VAKS+KIVMTSR AS+V+TLDM+ I  +QL
Sbjct: 1079 PIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQL 1138

Query: 902  RISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATLPKVIV 723
             + A  VK++IL+ PR KLK QHI+VLD +KL ++ P  DR ++ FELH+L+  LP +IV
Sbjct: 1139 SLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVI-PLGDRERVHFELHNLKNLLPSIIV 1197

Query: 722  KGISTVERAVI--NKDKGK--------YNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVK 573
            +GI TVERAVI   K  GK        YN+LVEG  L  VMGT GVDG KTTSNH++EV+
Sbjct: 1198 QGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQ 1257

Query: 572  ETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESV 393
            + LGIEAARKCII EI  TM  HGMSIDIRHMMLL DLMT+KGEVLGITRFGIQKM +SV
Sbjct: 1258 KFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITRFGIQKMDKSV 1317

Query: 392  LMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNYG 213
            LMLASFEKTADHL++A+  GRDDKIEGVSECIIMGIPMQIGTGILKV+Q V     LNYG
Sbjct: 1318 LMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRVDPPPVLNYG 1377

Query: 212  LDPIHS 195
             D I S
Sbjct: 1378 SDSIIS 1383


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score = 1830 bits (4739), Expect = 0.0
 Identities = 939/1405 (66%), Positives = 1109/1405 (78%), Gaps = 35/1405 (2%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            QFTK PY+EDVGPR+I+SIQFS FS AEV KA EV+V +  YYD  RKPI+N LLD  MG
Sbjct: 8    QFTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQRMG 67

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            PANKS +C TC G F  CPGH+GYL L LPVYNVG+F ++IDILK ICK+C+R+LL++K+
Sbjct: 68   PANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLADKD 127

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKPT--------CHRCRYVNGMVKKAGTMLGI 3789
             + +LK+MRNP+ E L+K  + K++VKKC           C RC Y+NGMVKKA   L I
Sbjct: 128  HQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPLKI 187

Query: 3788 VHDRSKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDR 3609
             HDR+K+VD   +E RSA++H K+ K +  V+  ++P     L + MLDEDCELLYL DR
Sbjct: 188  QHDRAKVVDNCLDERRSALAHTKDIKGNPVVISTIDPKTAYHLLENMLDEDCELLYLHDR 247

Query: 3608 PEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKC 3429
            PEKL++T+I VPPI IRPSVF+   A SNENDIT+RL  I++ NA++ QE+    S S+ 
Sbjct: 248  PEKLIVTNILVPPIAIRPSVFSTR-AMSNENDITSRLKQIIQINAAVLQEMSDQSSQSQS 306

Query: 3428 LAD-WELLQIEVAQYINSDVRGIPLSMQSST-PYRGFIQRLKGKQGRFRGNLSGKRVEYT 3255
            L + W+ LQ+EVAQYINSDVR +PL    +T P  GF+QRLKGKQGRFRGNLSGKRVE+T
Sbjct: 307  LTNNWDSLQVEVAQYINSDVR-VPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEFT 365

Query: 3254 GRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYP 3075
            GRTVISPDPNLKI EVA+PILMAQ+L+YPERVSHHNIE+LRQCVRNGP KYPGA FI++P
Sbjct: 366  GRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKHP 425

Query: 3074 DGSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRT 2895
            DG+ + L    R RAAD+LKYGYIV RHL+DGD++LFNRQPSLHRMSIMSHRARIMPWRT
Sbjct: 426  DGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWRT 485

Query: 2894 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2715
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF
Sbjct: 486  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 545

Query: 2714 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPN 2535
            LTSS+LITRKDTFYDRA+FSL+CSYMGD MDP+DLPTPAL+KP+ELWTGKQLFS+L+RP+
Sbjct: 546  LTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRPH 605

Query: 2534 ARMRVFLNLTVLEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLL 2355
            A+MRV++NLTV EKNY KSGE++CP DGFVY RNSEL+SGQLGKATLGNG+KDGL+SVLL
Sbjct: 606  AKMRVYVNLTVAEKNYGKSGETMCPKDGFVYIRNSELISGQLGKATLGNGSKDGLYSVLL 665

Query: 2354 RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELI 2175
            RDY+AHAAA CMNRLAKLSARWIGNHGFSIGI+DVQPG +LN++KK  I++GY  C + I
Sbjct: 666  RDYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVQPGIVLNKEKKVTIDKGYGQCIDYI 725

Query: 2174 QSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGS 1995
             SY  G+L L PGC+ A+TLEA ITG LN IRE  A VCM  LHWRNSPLIMSQC     
Sbjct: 726  GSYKSGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNNLHWRNSPLIMSQCDG--- 782

Query: 1994 PINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFF 1815
                    ACVGQQSVGGRRAPNGF+DR+LPHF R++K P AKGFV NSFYTGL+ATEFF
Sbjct: 783  --------ACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFF 834

Query: 1814 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMD 1635
            FHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+HYD TVRNAS  +VQF+YG D MD
Sbjct: 835  FHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDGTVRNASVCIVQFVYGGDAMD 894

Query: 1634 PARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLR----IVEEKLERHDASPAGG 1467
            P +ME KSG+PLN ERL++K KATCPA  Q SLS  E+ +    I+ ++L    A+P G 
Sbjct: 895  PGQMEEKSGLPLNFERLFMKAKATCPAVEQKSLSIEEIDKTMDEIIGDRLSESTATPEGE 954

Query: 1466 CSDAFK-------------KLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAA 1326
             S AF                L  F+ K+   + ++   L+L+ K   D +  +LE IA+
Sbjct: 955  SSQAFSASSNKEGGMETFDNSLRKFIQKK---YPNSDLMLKLNGKEHSDEDKGYLEKIAS 1011

Query: 1325 NISGITSQQLQVFLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASM 1146
            NI G+T QQL VFLETCI+RY  K+               GEPGTQMTLKTFHFAGVASM
Sbjct: 1012 NICGVTRQQLMVFLETCISRYRLKKIEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASM 1071

Query: 1145 NVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVM 966
            NVTLGVPRIKEIIN AK I+TPII+  L+ DN+   A+IVKG +EKT+L +VAKS+K   
Sbjct: 1072 NVTLGVPRIKEIINAAKKINTPIISTALQSDNNEIIAKIVKGRIEKTLLEQVAKSIKTSQ 1131

Query: 965  TSRQASIVVTLDMERIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEA 786
             SR  SIV+TLDM +I  + L + AY+VK+SIL+  R KLK Q ++VLD +KL I+  +A
Sbjct: 1132 ASRSTSIVITLDMTKIQGAHLSVDAYTVKESILKTKRMKLKEQQVKVLDHRKLEIV-MQA 1190

Query: 785  DRSKLQFELHSLRATLPKVIVKGISTVERAVI-----NKDKG---KYNLLVEGTNLQAVM 630
            D++KLQFELH L+  + KV+VKGI TVERA+I      KD     K  LLVEGT L +VM
Sbjct: 1191 DKTKLQFELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANKKMKLLVEGTGLLSVM 1250

Query: 629  GTPGVDGRKTTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTY 450
            G  GV+GRKTTSNHIIEV+  LGIEAARK II EIQYTM+SHGM+IDIRHMMLLADLMT 
Sbjct: 1251 GIEGVEGRKTTSNHIIEVQHILGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTS 1310

Query: 449  KGEVLGITRFGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIG 270
            KGEVLGITR+G+QKMK+SVLMLASFE+T+DHLFNAS NGR DKIEGVSECIIMGIP+QIG
Sbjct: 1311 KGEVLGITRYGVQKMKDSVLMLASFERTSDHLFNASVNGRVDKIEGVSECIIMGIPVQIG 1370

Query: 269  TGILKVRQSVKQVVKLNYGLDPIHS 195
            TG+LKVRQ+VK  ++L YG DPI S
Sbjct: 1371 TGMLKVRQNVKP-IELTYGPDPIIS 1394


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1808 bits (4683), Expect = 0.0
 Identities = 925/1386 (66%), Positives = 1089/1386 (78%), Gaps = 17/1386 (1%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGP 4122
            FTKEP++ED GPRKIK+++FS  S +E+ K AEVQVW+  YYD  +KPI   LLDP MGP
Sbjct: 11   FTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 4121 ANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKER 3942
            ANKS +CATC GNF  CPGH+GYLNL LPV+NVGY S++++ILK ICK CARILL E  R
Sbjct: 71   ANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTR 130

Query: 3941 RDYLKKMRNPRLEALQKSALAK-QIVKKCKPT--CHRCRYVNGMVKKAGTMLGIVHDRSK 3771
            + +LKKMR+ +   L K    K +++K C     C RC Y+NG VKK    L I+HD SK
Sbjct: 131  KKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDCSK 190

Query: 3770 IVDGTSEECRSAISHKKESKASFHVVH-VLNPVRVLALFKRMLDEDCELLYLRDRPEKLL 3594
              +   EE  SA+S  K+S+A+ +V + +LNP +VL+LFKRMLDEDCELLY+ +RPEKL+
Sbjct: 191  CRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEKLI 250

Query: 3593 ITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWE 3414
            +T++ VPPI IRPSV  D    SNENDIT RL  I++ANA LRQELQ +   SK L  W+
Sbjct: 251  MTNVVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESTFSSKFLDGWD 309

Query: 3413 LLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISP 3234
            +LQ EVAQ+INSDVRGIP  MQ +    GF+QRLKGK GRFRGNLSGKRVEYTGRTVISP
Sbjct: 310  ILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISP 369

Query: 3233 DPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHL 3054
            DPNLKI+EVAIPI MA++LTYPERV+HHNIEKLRQCVRNGP KYPGA  +R   G    L
Sbjct: 370  DPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSL 429

Query: 3053 RYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV 2874
            +   RKRAADEL+ G IV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESV
Sbjct: 430  KVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESV 489

Query: 2873 CNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 2694
            CNPYNADFDGDEMNLHVPQTEEARTEA++LMGV+NNLCTPKNGEILVASTQDFLTSSFLI
Sbjct: 490  CNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSFLI 549

Query: 2693 TRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFL 2514
            TRKDTFYDR+ FSL+CSY+GDGMDP+DLPTPA++KP+ELW+GKQLFS+++RP+A MRV++
Sbjct: 550  TRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRVYV 609

Query: 2513 NLTVLEKNYSK---------SGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSV 2361
            NLTV E+NY++           ++LCPNDGFVYFRNSEL+SGQ+GK TLGNGNKDGLFSV
Sbjct: 610  NLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSV 669

Query: 2360 LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDE 2181
            LLRDY AHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP E+L  +K   I EGY  CD+
Sbjct: 670  LLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDK 729

Query: 2180 LIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSK 2001
             I+++NKG L+L  GCDAAQTLE  ITGVLN +R+TA KVCM+ LHWRNSPLIMSQCGSK
Sbjct: 730  HIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSK 789

Query: 2000 GSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATE 1821
            GS INISQM+ACVGQQSVGGRR PNGFIDRSLPHFPRKSK PAAKGFVANSFY+GL+ATE
Sbjct: 790  GSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATE 849

Query: 1820 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDG 1641
            FFFHTMGGREGLVDTAVKTADTGYMSR+L+K+LEDL +HYD TVRNA G +VQF YGDDG
Sbjct: 850  FFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQFCYGDDG 909

Query: 1640 MDPARMEGKSGVPLNLERLYLKVKATCP-ARTQASLSPSEVLRIVEEKLERHDASPAGGC 1464
            MDPA MEGK+G PLN ERL+LK KA CP       LS S+V ++V EKL   D S     
Sbjct: 910  MDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDMSRLAEK 969

Query: 1463 SDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFL 1284
                     DFV     + S  K   +L E+   D +   L+     ISGIT +QL VFL
Sbjct: 970  GVFEVGFSADFVE---SLQSFIKDNAKLTEEGFTDEHSQNLKKFGQRISGITRKQLDVFL 1026

Query: 1283 ETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1104
              C++RY SK+               GEPGTQMTLKTFHFAGVASMNVTLGVPR+KEI+N
Sbjct: 1027 NICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMN 1086

Query: 1103 GAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDME 924
            G K ISTPIITA LE D++  +ARIVKG +EKT LG+VAKS+K+VMTSR AS+V+TLDM+
Sbjct: 1087 GNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRSASVVITLDMK 1146

Query: 923  RIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRA 744
            RI  + L I A  VK+SIL+  +TKLK +HI++LD KKL ++P + DRSK+ F+LH L+ 
Sbjct: 1147 RIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVPQDVDRSKIHFQLHYLKN 1206

Query: 743  TLPKVIVKGISTVERAVINKD--KGKYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVKE 570
             LP V+VKGI TV+R VI+KD    K+ LLVEGT  + VMG  G+DGRKT SNHI EV++
Sbjct: 1207 LLPTVVVKGIKTVDRVVISKDTKAEKFRLLVEGTGFREVMGVEGIDGRKTVSNHIHEVRD 1266

Query: 569  TLGIEAARKCIISEIQYTMA-SHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESV 393
            TLGIEAAR+ I+ EI+YTM  +HGM+IDIRHMMLLAD+MT  G +LGI RFGI KM +SV
Sbjct: 1267 TLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGHILGINRFGISKMGKSV 1326

Query: 392  LMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNYG 213
            LMLASFE+TAD LF AS  GRDD I GVSE IIMGIP+QIGTG++KV+Q +    +L +G
Sbjct: 1327 LMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGMIKVKQRL-DPPELPHG 1385

Query: 212  LDPIHS 195
              PI S
Sbjct: 1386 TSPILS 1391


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1787 bits (4629), Expect = 0.0
 Identities = 914/1387 (65%), Positives = 1082/1387 (78%), Gaps = 18/1387 (1%)
 Frame = -1

Query: 4301 FTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGP 4122
            FTKEP++ED GPRKIK+++FSM S +E+ K  EVQVW+  YYD  +KPI   LLDP MGP
Sbjct: 11   FTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 4121 ANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKER 3942
            ANKS  CATCHGNF  CPGH+GYLNL LPV+NVGY  S+++ILK ICK CARILL E  R
Sbjct: 71   ANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDEDTR 130

Query: 3941 RDYLKKMRNPRLEALQKSALAK-QIVKKCKPT--CHRCRYVNGMVKKAGTMLGIVHDRSK 3771
            + +LKKMR+ +   L K    K +I+K C     C RC Y+NG VKK    L I+HD SK
Sbjct: 131  KKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDCSK 190

Query: 3770 IVDGTSEECRSAISHKKESKASFHVVH-VLNPVRVLALFKRMLDEDCELLYLRDRPEKLL 3594
              +   EE  S +S  K+SKA+ +V + +LNP +VL+LF++MLDEDCELLY+ +RPEKL+
Sbjct: 191  CKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEKLI 250

Query: 3593 ITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADWE 3414
            IT+I VPPI IRPSV  D    SNENDIT RL  I++ANA LRQELQ +   SK L  WE
Sbjct: 251  ITNIVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESSVSSKFLDGWE 309

Query: 3413 LLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISP 3234
            +LQ EVAQ+INS+VRGIP  MQS+    GF+QRLKGK GRFRGNLSGKRVEYTGRTVISP
Sbjct: 310  ILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISP 369

Query: 3233 DPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMHL 3054
            DPNLKI+EVAIPILMA +LTYPERV+HHNIEKLRQCVRNGP KYPGA  +R   G    L
Sbjct: 370  DPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSL 429

Query: 3053 RYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV 2874
            +   RKRAADEL+ G IV+RHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV
Sbjct: 430  KVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV 489

Query: 2873 CNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 2694
            CNPYNADFDGDEMNLHVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFLTSSFL+
Sbjct: 490  CNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLV 549

Query: 2693 TRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVFL 2514
            TRKDTFYDR+AF+ +C+++GDG+D +DLPTPA++KP+ELW+GKQLFS+L+RP+A  +V++
Sbjct: 550  TRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVYV 609

Query: 2513 NLTVLEKNYSKSGE------SLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLR 2352
            NLTV EK Y+K  +      +LCPNDGFVYFRN+EL+SGQ+GK TLGNGNKDGLFSVLLR
Sbjct: 610  NLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSVLLR 669

Query: 2351 DYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQ 2172
            DY AHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP E+L ++K   + EGY+ CD  IQ
Sbjct: 670  DYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNHIQ 729

Query: 2171 SYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSP 1992
            ++NKG L+L  GCDA QTLE +ITGVLN +R+ A KVCM+ LHWRNSPLIMSQCGSKGSP
Sbjct: 730  AFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKGSP 789

Query: 1991 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFF 1812
            INISQM+ACVGQQSVGGRRAPNGF+DRSLPHFP  +K PAAKGFVANSFY+GL+ATEFFF
Sbjct: 790  INISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATEFFF 849

Query: 1811 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDP 1632
            HTMGGREGLVDTAVKTADTGYMSR+L+K++EDL +HYD TVRNA G +VQF YGDDGMDP
Sbjct: 850  HTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDGMDP 909

Query: 1631 ARMEGKSGVPLNLERLYLKVKATCPARTQAS-LSPSEVLRIVEEKLERHDASPAGGCSDA 1455
              MEGK+G PLN ERL+LK KA CP +     LS S+V ++V+EKL     S        
Sbjct: 910  GGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLSEFGVSREVEKGVL 969

Query: 1454 FKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFLETC 1275
                  DFV     + S  K   +L E+   D N   L+     ISGIT  QL+VFL  C
Sbjct: 970  EVGFSADFVQ---SLQSFIKDNTKLTEETFTDDNSQILKKFGERISGITRAQLEVFLNIC 1026

Query: 1274 ITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1095
            ++RY SK+               GEPGTQMTLKTFHFAGVASMNVTLGVPR+KEI+NG K
Sbjct: 1027 LSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNK 1086

Query: 1094 NISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDMERIH 915
             ISTPIITA LE  +   +ARIVKG +EKT LG+VAKS+K+V+TSR AS+V+TLDMERI 
Sbjct: 1087 KISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLASVVITLDMERIQ 1146

Query: 914  ASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRATLP 735
             + L I A  VK+SILQ  + KLK +HI++LD KKLR++P + DRSKL F+L+ L+  LP
Sbjct: 1147 DAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQDGDRSKLHFQLNYLKNLLP 1206

Query: 734  KVIVKGISTVERAVINKDKG------KYNLLVEGTNLQAVMGTPGVDGRKTTSNHIIEVK 573
             V+VKGI T +R VI+K++       K+ LLVEGT  + VMG  GVDG KT SNHI EV+
Sbjct: 1207 SVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMGVEGVDGCKTVSNHIHEVR 1266

Query: 572  ETLGIEAARKCIISEIQYTMA-SHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKES 396
            +TLGIEAAR+CI+ EI+Y M  +HGM+ID RHMMLLAD+MT  G +LGI RFGI KM +S
Sbjct: 1267 DTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILGINRFGISKMGKS 1326

Query: 395  VLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSVKQVVKLNY 216
            VLMLASFE+TAD LF AS  GRDD I GVSE IIMGIP+ IGTG++KV+Q + ++  L +
Sbjct: 1327 VLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKVKQRL-ELPDLPH 1385

Query: 215  GLDPIHS 195
            G  PI S
Sbjct: 1386 GASPILS 1392


>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score = 1765 bits (4571), Expect = 0.0
 Identities = 890/1374 (64%), Positives = 1077/1374 (78%), Gaps = 21/1374 (1%)
 Frame = -1

Query: 4304 QFTKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMG 4125
            Q TK+PYIEDVG R+I+SI FS  SG+EV K A V+V++  YYD  +KP+ N LLD  MG
Sbjct: 2    QSTKQPYIEDVGSRRIESINFSTLSGSEVLKTAVVEVYKGSYYDANKKPVSNGLLDMRMG 61

Query: 4124 PANKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKE 3945
            P NK  +C TCHGNF  CPGH+GYL L LPVYNVGY S+++DILK ICK+C+R+LL EKE
Sbjct: 62   PPNKRSVCGTCHGNFQECPGHYGYLALALPVYNVGYLSNIVDILKCICKNCSRVLLEEKE 121

Query: 3944 RRDYLKKMRNPRLEALQKSALAKQIVKKCKPT--------CHRCRYVNGMVKKAGTMLGI 3789
               +L+KMRNPRLE L+K+ L K+IVK+C           C RC ++NGMVK+A     +
Sbjct: 122  HHGFLRKMRNPRLEPLKKTDLFKKIVKRCNSKAGSNKLAKCPRCGHINGMVKRAPYK--V 179

Query: 3788 VHDRSKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDR 3609
            ++DR +++D   EEC+SA    K S+ +      L+ + V  L + MLDEDCELLY+ DR
Sbjct: 180  MYDRGRVIDSQMEECQSAGPSMKASRGN--TTSTLDALFVFRLLRNMLDEDCELLYIHDR 237

Query: 3608 PEKLLITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKC 3429
            PEKL++T+I VPP  IRPSVF DGG +SNENDIT RL  I+ ANA+L Q+L  T    K 
Sbjct: 238  PEKLMVTNILVPPTAIRPSVFVDGGTQSNENDITERLKYIIEANANLSQQLLETNIYKKG 297

Query: 3428 LADWELLQIEVAQYINSDVRGIPL-SMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTG 3252
            +  WE LQIEVAQYINSD RG+PL    SS P  GF+QRLKGKQGRFRGNLSGKRVEYTG
Sbjct: 298  VTSWETLQIEVAQYINSDTRGLPLYGGGSSKPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 357

Query: 3251 RTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPD 3072
            RTVISPDPNLKITEVA+PILMA++LTYPERVSH NI +LR+CVR GP +YPGA FIR PD
Sbjct: 358  RTVISPDPNLKITEVAVPILMAKILTYPERVSHQNIAELRECVRRGPNEYPGAKFIRQPD 417

Query: 3071 GSLMHLRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 2892
            G+ + LR+SSRK  AD LKYG IV+RHL+DGD+VLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 418  GTEISLRFSSRKIHADALKYGDIVDRHLKDGDIVLFNRQPSLHRMSIMCHRARIMPWRTL 477

Query: 2891 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2712
            RFNESVCNPYNADFDGDEMN+HVPQTEE+R EA+MLMGVQNNLCTPKNGE+LVASTQDFL
Sbjct: 478  RFNESVCNPYNADFDGDEMNMHVPQTEESRAEAIMLMGVQNNLCTPKNGEVLVASTQDFL 537

Query: 2711 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNA 2532
            TSSFLITRKDTFYDR+AFSL+C+++ DG+  VDLP PA++KP+ELWTGKQ+FSVL+RP+ 
Sbjct: 538  TSSFLITRKDTFYDRSAFSLICAFVSDGLGTVDLPMPAVVKPVELWTGKQIFSVLLRPDK 597

Query: 2531 RMRVFLNLTVLEKNYSKSGESLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGLFSVLLR 2352
              +VF+NLTV EK Y KSGE++CP DGFV  RNSEL+SGQLGKATLGNG+KDGL+S+LLR
Sbjct: 598  DRKVFVNLTVAEKIYVKSGETMCPRDGFVCIRNSELISGQLGKATLGNGSKDGLYSILLR 657

Query: 2351 DYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEACDELIQ 2172
            DY AHAAA CMNRLAKLSARWIGNHGFSIGI+DVQPG++LN +KK  I++ Y  C   I+
Sbjct: 658  DYGAHAAADCMNRLAKLSARWIGNHGFSIGINDVQPGDILNTEKKTVIDDEYGQCIRYIE 717

Query: 2171 SYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQCGSKGSP 1992
            SY  G L+L PGC+ A+TLEA+ITG LNKIR+T A+VCM  L WRNSPLIMSQCGSKGSP
Sbjct: 718  SYKSGKLELLPGCNKAETLEAKITGTLNKIRDTTAEVCMTNLSWRNSPLIMSQCGSKGSP 777

Query: 1991 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFF 1812
            INI QM+ACVGQQSVGGRRAPNGF+DR+LPHF R +K P AKGFV NSFYTGL  TEFFF
Sbjct: 778  INICQMVACVGQQSVGGRRAPNGFLDRTLPHFERGAKDPDAKGFVQNSFYTGLLPTEFFF 837

Query: 1811 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYGDDGMDP 1632
            HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS+ YD TVRNASG +VQF YGDDG+DP
Sbjct: 838  HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDSTVRNASGCIVQFTYGDDGLDP 897

Query: 1631 ARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSE----VLRIVEEKLERHDASPAGGC 1464
            A+ME K+G PLN ERL++K KATCP+  Q SL   +    + R++EE   R D S    C
Sbjct: 898  AQMEEKTGFPLNFERLFMKAKATCPSEGQPSLKAEDIDFIINRVIEENHSRSDISEMEKC 957

Query: 1463 SDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQVFL 1284
            S+ F+  LL F++KR+  + +   + +L+ +     + ++++++ ++ SGIT QQL+VFL
Sbjct: 958  SETFEASLLRFLNKRV--YPTGMLSEKLNSENISLQDKSYVQSVVSSTSGITQQQLEVFL 1015

Query: 1283 ETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1104
              C  RY  K+               GEPGTQMTLKTFHFAGVASMNVTLGVPRI+EII+
Sbjct: 1016 NMCFARYHPKKIECGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIREIID 1075

Query: 1103 GAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLDME 924
             AK I TP+IT  L+  +   +ARIVKG +EKT+LGE+AKSMK+   +R ASIV+ LD +
Sbjct: 1076 AAKKIKTPVITTELQRKDCGITARIVKGRIEKTLLGEIAKSMKVSEMTRTASIVIKLDTK 1135

Query: 923  RIHASQLRISAYSVKQSILQHPRTKLKTQHIEVLDDKKLRILPPEADRSKLQFELHSLRA 744
             I A+QL I AY+VK+SIL  P+ KLK Q I VL+ +KL +   EA+RSKL+FE  +L+ 
Sbjct: 1136 VIEAAQLFIDAYTVKESILLTPKMKLKEQQIRVLNRQKLTV-SLEAERSKLEFESWALQN 1194

Query: 743  TLPKVIVKGISTVERAVI-----NKD---KGKYNLLVEGTNLQAVMGTPGVDGRKTTSNH 588
             L  V+VKGI  VERA+I      KD   + K  L+VEGT   +V+G  GVD R T SNH
Sbjct: 1195 KLKDVVVKGIKQVERAIIVDEANGKDPNQRKKLKLVVEGTGFLSVLGIQGVDARNTKSNH 1254

Query: 587  IIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQK 408
            I+EV + LGIE+AR+ II EIQYTM+ HGM+IDIRHMMLLADLMT+KGEVLGITR+G++K
Sbjct: 1255 IMEVFQVLGIESARRQIIDEIQYTMSGHGMTIDIRHMMLLADLMTFKGEVLGITRYGVRK 1314

Query: 407  MKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQ 246
            M++SVLMLASFE+TADHLFNA  NGR D+IEGVSECI++GIPM+ GTG++K++Q
Sbjct: 1315 MRDSVLMLASFERTADHLFNAPVNGRVDRIEGVSECIMLGIPMRTGTGMMKIKQ 1368


>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1400

 Score = 1765 bits (4571), Expect = 0.0
 Identities = 902/1394 (64%), Positives = 1084/1394 (77%), Gaps = 28/1394 (2%)
 Frame = -1

Query: 4298 TKEPYIEDVGPRKIKSIQFSMFSGAEVRKAAEVQVWRNGYYDPTRKPIENALLDPHMGPA 4119
            TKEP+++D  P++IKS++F   SG E+R++A  QVW    YD + KP+ N LLDP MG +
Sbjct: 14   TKEPFVDDASPQRIKSMRFCTLSGKEIRQSAAAQVWNTRIYDSSLKPVPNGLLDPRMGAS 73

Query: 4118 NKSGICATCHGNFTSCPGHFGYLNLVLPVYNVGYFSSVIDILKSICKSCARILLSEKERR 3939
            +K G CATCHG++T CPGHFGY+ L LPV+NVGYF+ ++ +LK ICK C+R+LL+E   +
Sbjct: 74   DKCGECATCHGSYTECPGHFGYIKLALPVFNVGYFNKILAVLKCICKGCSRVLLTENIHQ 133

Query: 3938 DYLKKMRNPRLEALQKSALAKQIVKKCKPT-CHRCRYVNGMVKKAGTM-----LGIVHDR 3777
            ++LKKMRNPR +   +S++  ++  KC+P+ C  C Y+NG+VKK G       + IVHD 
Sbjct: 134  EFLKKMRNPRAD---RSSIMIKVRDKCRPSRCSWCGYINGIVKKEGRRALKQTVVIVHDC 190

Query: 3776 SKIVDGTSEECRSAISHKKESKASFHVVHVLNPVRVLALFKRMLDEDCELLYLRDRPEKL 3597
            SK +D ++EE RS +SHKKE K S   VH L+PV VL+LF+R+ DEDCELL + +RPE L
Sbjct: 191  SKNLDASTEEVRSVLSHKKE-KLSITSVHTLDPVTVLSLFRRITDEDCELLAIGERPENL 249

Query: 3596 LITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIMRANASLRQELQCTGSMSKCLADW 3417
            +ITDIAVPP+PIRPS F  G   SNE+ IT+ L  I+ AN+ L+  +Q      KC   W
Sbjct: 250  IITDIAVPPVPIRPSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQVPMKCFTWW 309

Query: 3416 ELLQIEVAQYINSDVRGIPLSMQSSTPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVIS 3237
            E LQ  V +YINSD      S+Q S    G IQRLKGK GRFRGNLSGKR E+TGRTVIS
Sbjct: 310  EQLQDNVIEYINSDAS----SLQDSKDC-GLIQRLKGKTGRFRGNLSGKRTEHTGRTVIS 364

Query: 3236 PDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDGSLMH 3057
            PDPNL+ITEVAIP+LMA+VLTYPERV+++NIEKLRQC+RNGP K+PGANFI  PD + +H
Sbjct: 365  PDPNLRITEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPGANFIIQPDETKLH 424

Query: 3056 LRYSSRKRAADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 2877
            L Y  R RAA +LKYG IVERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNES
Sbjct: 425  LNYCDRSRAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 484

Query: 2876 VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 2697
            VCNPYNADFDGDEMNLHVPQTEEARTEA +LMGVQ+NLCTPKNGEILVASTQDFLTSSFL
Sbjct: 485  VCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGEILVASTQDFLTSSFL 544

Query: 2696 ITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFSVLVRPNARMRVF 2517
            +TRKDTFYDR+ F+L+CSY+GD M+ +DLPTPA+IKP+ELWTGKQLFSVLVRPNA  +VF
Sbjct: 545  VTRKDTFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPVELWTGKQLFSVLVRPNACTKVF 604

Query: 2516 LNLTVLEKNYSKSGE-----------SLCPNDGFVYFRNSELMSGQLGKATLGNGNKDGL 2370
            LNLTV EK Y K  E           ++CPNDGFVYFRNSEL+SGQLGK TLGNGNK+G+
Sbjct: 605  LNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSGQLGKKTLGNGNKEGM 664

Query: 2369 FSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQQKKARIEEGYEA 2190
            FSVLLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG+ LN++KK  I+EGYE 
Sbjct: 665  FSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKVIIDEGYEE 724

Query: 2189 CDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETAAKVCMEELHWRNSPLIMSQC 2010
            C++LI  Y+KG+LK QPGC  AQTLE++I+ VLNK+RETA   CM  LHWRNSPLIMSQC
Sbjct: 725  CNKLIALYSKGHLKPQPGCSRAQTLESQISCVLNKLRETAGDDCMSTLHWRNSPLIMSQC 784

Query: 2009 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT 1830
            GSKGSPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP  SK PAAKGFVANSFYTGLT
Sbjct: 785  GSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLT 844

Query: 1829 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNASGGVVQFLYG 1650
            A+EFFFHTMGGREGLVDTAVKTADTGY+SRRL+K LEDLS+ YD TVRNASGG+VQF+YG
Sbjct: 845  ASEFFFHTMGGREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYG 904

Query: 1649 DDGMDPARMEGKSGVPLNLERLYLKVKATCPARTQASLSPSEVLRIVEEKLERHDASPAG 1470
            DDGMDP +MEGK G PLNL++L++KVKATCP R   +LSP  +L++  + L + + S +G
Sbjct: 905  DDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFNDTLFKQETS-SG 963

Query: 1469 GCSDAFKKLLLDFVHKRIDMFSSTKRALQLDEKYAGDSNVNFLENIAANISGITSQQLQV 1290
             CSD  K++L  F+  R+ M  ST+RAL +DE + G  + +  E IAA+ISGI+++QLQV
Sbjct: 964  RCSDKLKEMLTKFLEDRVKMLRSTRRALHIDEDHVGRRDSSVEECIAADISGISAKQLQV 1023

Query: 1289 FLETCITRYDSKRXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1110
            FL+TC +RY SK                GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI
Sbjct: 1024 FLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1083

Query: 1109 INGAKNISTPIITATLECDNDVKSARIVKGCVEKTVLGEVAKSMKIVMTSRQASIVVTLD 930
            IN AK  STPIIT  L    D   A  VK  +EK VLGEVA ++ IV     +++VV LD
Sbjct: 1084 INAAKKTSTPIITTELLSGQDKSFAVKVKSSIEKVVLGEVAAAINIVFKETDSNLVVKLD 1143

Query: 929  MERIHA-SQLRISAYSVKQSILQHPR----TKLKTQHIEVLDDKKLRILPPEADRSKLQF 765
            MERI A   + IS+ SV+ SIL H R     KL ++H+ V+D  KLRI      +S L  
Sbjct: 1144 MERIEAQGYMGISSDSVRLSILNHRRIRLELKLTSEHVCVVDQAKLRIHAAGKGKSGLLL 1203

Query: 764  ELHSLRATLPKVIVKGISTVERAVIN------KDKGKYNLLVEGTNLQAVMGTPGVDGRK 603
            ELH+L++ LPKVIVKGI TVERAV+N      K   +YNLLVEGTNL AV+GTPGVD +K
Sbjct: 1204 ELHNLKSMLPKVIVKGIPTVERAVVNPVFRHDKTFDRYNLLVEGTNLLAVLGTPGVDAKK 1263

Query: 602  TTSNHIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITR 423
            T SNHI+EV +TLGIEAAR+ II EI+YT  ++ M ID+RHMMLLAD+MT KGEVL +T 
Sbjct: 1264 TKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMTSKGEVLPMTA 1323

Query: 422  FGIQKMKESVLMLASFEKTADHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQS 243
             GI KMK SVLMLASFE+T DHLFNAS+ GR D+IEGVSEC+IMG+PM+ GTGILKV+Q 
Sbjct: 1324 HGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKPGTGILKVKQR 1383

Query: 242  VKQVVKLNYGLDPI 201
            +  + +  Y  DP+
Sbjct: 1384 LPDLPEFQYQPDPL 1397