BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00006652
         (739 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...   164   3e-38
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   140   6e-31
ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma ca...   138   2e-30
ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma ca...   138   2e-30
ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma ca...   138   2e-30
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...   138   2e-30
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   138   2e-30
ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron sp...   135   2e-29
gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitat...   134   3e-29
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...   127   3e-27
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   123   8e-26
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...   123   8e-26
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...   121   2e-25
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   119   1e-24
ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron sp...   116   9e-24
ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [A...   103   6e-20
ref|XP_003590782.1| Chloroplastic group IIA intron splicing faci...    99   2e-18
ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron sp...    98   3e-18
ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana] gi|...    98   3e-18
dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]            98   3e-18

>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
           gi|462423956|gb|EMJ28219.1| hypothetical protein
           PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score =  164 bits (415), Expect = 3e-38
 Identities = 98/218 (44%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFTPG 447
           M+LVPS Q+  TS  DSFQ+S SK H    HL R GSS   +KH F  T  TI S   P 
Sbjct: 1   MTLVPSRQLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPE 60

Query: 446 KYPQRXXXXXXXXXXNDGCR--------NWIDKWSEDYQPKLPKRPQAVLDYRNSDDE-- 297
           + P R              +        +WIDKW+E ++   PK P+AVLDY++S+    
Sbjct: 61  QNPLRKSNFVRKNQPISQYKPKKNFSSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNL 120

Query: 296 MXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVED 117
                              TMEKIVEKLK+FGY+D++NE    + +S    V+E+GSVED
Sbjct: 121 SGSGYAEGDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDS----VIEKGSVED 176

Query: 116 IFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           IFY+EEG+LPNSRGGFS ESPLGI     FG +G+VRF
Sbjct: 177 IFYIEEGMLPNSRGGFSEESPLGI--ENVFGGDGKVRF 212


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  140 bits (352), Expect = 6e-31
 Identities = 90/216 (41%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
 Frame = -3

Query: 626 MSLVPSCQI--CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFT 453
           M+L+PS Q     TSFLDSF       H+ R    RYGSSN  R H+  VT+NTI S+ T
Sbjct: 1   MALLPSRQFYPTTTSFLDSF-------HSTRLQFFRYGSSNRFRTHSSYVTRNTIASNST 53

Query: 452 PGKYPQRXXXXXXXXXXNDGCR------NWIDKWSEDYQPKLPKRPQAVLDYRNSDDEMX 291
             +               D         NWIDKW+  +Q   PK  + V++YRNS+    
Sbjct: 54  NPQRKSNIVFTNTPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKEXRPVMNYRNSET--- 110

Query: 290 XXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIF 111
                            TMEKIVEKLK+FGY+D+  E  E++       ++E+GS+EDIF
Sbjct: 111 -----VSRSDGGSGGGSTMEKIVEKLKKFGYMDDVKETKENV----QERIIEKGSIEDIF 161

Query: 110 YVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           Y+EEGILPN +GGFS +SPLG+   G    NGEVRF
Sbjct: 162 YIEEGILPNPQGGFSLDSPLGVENKG--DGNGEVRF 195


>ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma cacao]
           gi|508714006|gb|EOY05903.1| CRM family member 3A isoform
           4 [Theobroma cacao]
          Length = 645

 Score =  138 bits (348), Expect = 2e-30
 Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
 Frame = -3

Query: 626 MSLVPSCQI-----CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKH------NFSVT 480
           M+L+P+ Q       +++FLDSFQ  LSK H +      Y SSN P K       N++VT
Sbjct: 1   MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 479 QNTIRSDFTPGK---YPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRN 309
            N++   +   K   +P +               NW+D W++ ++   PK P+ V +YR 
Sbjct: 61  SNSLFHQYPKSKTKAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 308 SDDEMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERG 129
             D                    TMEKIVEKLK+FGYI E NE+ E         V+ERG
Sbjct: 112 KGD--VWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEK-GEEEPKRVIERG 168

Query: 128 SVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           S+EDIFYVEEG+LPN+RGGFS+ESPLG+     FG +GEVRF
Sbjct: 169 SIEDIFYVEEGMLPNNRGGFSKESPLGM--ENVFGSDGEVRF 208


>ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma cacao]
           gi|508714005|gb|EOY05902.1| CRM family member 3A isoform
           3 [Theobroma cacao]
          Length = 856

 Score =  138 bits (348), Expect = 2e-30
 Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
 Frame = -3

Query: 626 MSLVPSCQI-----CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKH------NFSVT 480
           M+L+P+ Q       +++FLDSFQ  LSK H +      Y SSN P K       N++VT
Sbjct: 1   MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 479 QNTIRSDFTPGK---YPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRN 309
            N++   +   K   +P +               NW+D W++ ++   PK P+ V +YR 
Sbjct: 61  SNSLFHQYPKSKTKAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 308 SDDEMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERG 129
             D                    TMEKIVEKLK+FGYI E NE+ E         V+ERG
Sbjct: 112 KGD--VWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEK-GEEEPKRVIERG 168

Query: 128 SVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           S+EDIFYVEEG+LPN+RGGFS+ESPLG+     FG +GEVRF
Sbjct: 169 SIEDIFYVEEGMLPNNRGGFSKESPLGM--ENVFGSDGEVRF 208


>ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma cacao]
           gi|508714004|gb|EOY05901.1| CRM family member 3A isoform
           2 [Theobroma cacao]
          Length = 685

 Score =  138 bits (348), Expect = 2e-30
 Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
 Frame = -3

Query: 626 MSLVPSCQI-----CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKH------NFSVT 480
           M+L+P+ Q       +++FLDSFQ  LSK H +      Y SSN P K       N++VT
Sbjct: 1   MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 479 QNTIRSDFTPGK---YPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRN 309
            N++   +   K   +P +               NW+D W++ ++   PK P+ V +YR 
Sbjct: 61  SNSLFHQYPKSKTKAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 308 SDDEMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERG 129
             D                    TMEKIVEKLK+FGYI E NE+ E         V+ERG
Sbjct: 112 KGD--VWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEK-GEEEPKRVIERG 168

Query: 128 SVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           S+EDIFYVEEG+LPN+RGGFS+ESPLG+     FG +GEVRF
Sbjct: 169 SIEDIFYVEEGMLPNNRGGFSKESPLGM--ENVFGSDGEVRF 208


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
           gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
           1 [Theobroma cacao]
          Length = 876

 Score =  138 bits (348), Expect = 2e-30
 Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
 Frame = -3

Query: 626 MSLVPSCQI-----CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKH------NFSVT 480
           M+L+P+ Q       +++FLDSFQ  LSK H +      Y SSN P K       N++VT
Sbjct: 1   MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 479 QNTIRSDFTPGK---YPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRN 309
            N++   +   K   +P +               NW+D W++ ++   PK P+ V +YR 
Sbjct: 61  SNSLFHQYPKSKTKAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 308 SDDEMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERG 129
             D                    TMEKIVEKLK+FGYI E NE+ E         V+ERG
Sbjct: 112 KGD--VWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEK-GEEEPKRVIERG 168

Query: 128 SVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           S+EDIFYVEEG+LPN+RGGFS+ESPLG+     FG +GEVRF
Sbjct: 169 SIEDIFYVEEGMLPNNRGGFSKESPLGM--ENVFGSDGEVRF 208


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Vitis vinifera]
           gi|297737163|emb|CBI26364.3| unnamed protein product
           [Vitis vinifera]
          Length = 902

 Score =  138 bits (347), Expect = 2e-30
 Identities = 89/216 (41%), Positives = 115/216 (53%), Gaps = 8/216 (3%)
 Frame = -3

Query: 626 MSLVPSCQI--CQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFT 453
           M+L+PS Q     TSFLDSF       H+ R    RYGSSN  R H+  V +NTI S+ T
Sbjct: 1   MALLPSRQFYPTTTSFLDSF-------HSTRLQFFRYGSSNRFRTHSSYVARNTIASNST 53

Query: 452 PGKYPQRXXXXXXXXXXNDGCR------NWIDKWSEDYQPKLPKRPQAVLDYRNSDDEMX 291
             +               D         NWIDKW+  +Q   PK  + V++YRNS+    
Sbjct: 54  NPQRKSNIVFTNTPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRNSET--- 110

Query: 290 XXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIF 111
                            TMEKIVEKLK+FGY+D+  E  E++       ++E+GS+EDIF
Sbjct: 111 -----VSRSDGGSGGGSTMEKIVEKLKKFGYMDDVKETKENV----QERIIEKGSIEDIF 161

Query: 110 YVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           Y+EEGILPN +GGFS +SPLG+   G    NGEVRF
Sbjct: 162 YIEEGILPNPQGGFSLDSPLGVENKG--DGNGEVRF 195


>ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 852

 Score =  135 bits (339), Expect = 2e-29
 Identities = 95/215 (44%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFTPG 447
           M+LVPS Q+  TS L+S   SLSK H   FHL RY SS   +K +F  TQ  I S  TP 
Sbjct: 1   MTLVPSRQLYPTSLLES---SLSKFHGTHFHLFRY-SSIPFKKQSFHATQYFITSSLTPE 56

Query: 446 KYPQRXXXXXXXXXXN----DGCRNWIDKWSEDYQPKLPKRPQAVLDYRNSDDEMXXXXX 279
           + P R                 C +WID+W++  +   P+RP+AVLDY++++        
Sbjct: 57  QNPPRKLNLLICQYKPTKNLSSC-SWIDRWNDSRKQHGPRRPRAVLDYQSNES------- 108

Query: 278 XXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIFYVEE 99
                        TM+KIVEKLK+FGYI  A +K E         V+E+GSVEDIFYVEE
Sbjct: 109 -GNLSSDGNDGGSTMDKIVEKLKKFGYI--AEDKNEGRGEVRER-VIEKGSVEDIFYVEE 164

Query: 98  GILPNSRGGFSRESPLG---IGGSGAFGYNGEVRF 3
           G+LPNSRGGFS  SPLG   + G G     GEVRF
Sbjct: 165 GMLPNSRGGFSGVSPLGTEDVFGDG----GGEVRF 195


>gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
           notabilis]
          Length = 878

 Score =  134 bits (338), Expect = 3e-29
 Identities = 94/221 (42%), Positives = 117/221 (52%), Gaps = 13/221 (5%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHN-----FSVTQNTIRS 462
           M+LVPS Q   TSF DS       LH       RYGSS + RKH      +S   ++  S
Sbjct: 1   MALVPSRQFYPTSFFDS-------LHGTHIKFFRYGSSITFRKHRLYSTKYSSVNSSSSS 53

Query: 461 DFTPG-KYPQ--RXXXXXXXXXXND---GCRNWIDKWSEDYQPKLPKRPQAVLDYRNSDD 300
           +  PG KY +  R           D      +WI+KW+E +Q   PK P AVLDYRNS+ 
Sbjct: 54  EQNPGGKYNKFFRTTQNNNWHNKYDDNLSSTSWIEKWNETHQQIRPKPPGAVLDYRNSES 113

Query: 299 -EMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSV 123
                                TME+IVEKLK+FGY+D+   + +         V+E+GSV
Sbjct: 114 GNQPRSSYANRNGGDNNSGGSTMERIVEKLKKFGYMDDVGSEGKE---DKGERVIEKGSV 170

Query: 122 EDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYN-GEVRF 3
           EDIFYVEEG+LPN RGGFS +SPLG+   G FG N GEVRF
Sbjct: 171 EDIFYVEEGMLPNPRGGFSPDSPLGV--EGVFGGNGGEVRF 209


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
           gi|222864769|gb|EEF01900.1| hypothetical protein
           POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score =  127 bits (320), Expect = 3e-27
 Identities = 83/209 (39%), Positives = 107/209 (51%), Gaps = 1/209 (0%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFTPG 447
           M+LVPS Q+    ++DSFQ+S SK H       RY SS   R H+      T   D  P 
Sbjct: 1   MALVPSRQL----YIDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGYACSIT---DKNPS 53

Query: 446 KYPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRNSDDEMXXXXXXXXX 267
                               +W   W++  +  LP+ PQAV DYR+++            
Sbjct: 54  TKSTSFPTDKSKTLNLSTGSSWFFNWNKPNKQNLPRTPQAVFDYRSNNSNSSGSGST--- 110

Query: 266 XXXXXXXXXTMEKIVEKLKRFGYID-EANEKMESMPNSNSSSVLERGSVEDIFYVEEGIL 90
                     MEKIVEKLK+ GY+D + NE  E M       V+E+GSVEDIFYVEEG+L
Sbjct: 111 ----------MEKIVEKLKKHGYMDGDVNENKERM----QERVIEKGSVEDIFYVEEGML 156

Query: 89  PNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           PN+RGGFS+ESPLG+     F  +GEVRF
Sbjct: 157 PNARGGFSKESPLGV--EDVFRSDGEVRF 183


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521988|gb|ESR33355.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  123 bits (308), Expect = 8e-26
 Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
 Frame = -3

Query: 626 MSLVPSCQICQ-TSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNF--SVTQNTIRSDF 456
           M+LVPS Q C  T+  DSFQ+S SK H   FH  R G S   + H F  + + N+     
Sbjct: 1   MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNFSSNSAHEKN 60

Query: 455 TPGKYPQRXXXXXXXXXXNDGCRN------WIDKWSEDYQPKLPKRPQAVLDYRNSDDEM 294
           TP K               D   N      W+ KW++  +    K PQA ++YR ++ ++
Sbjct: 61  TPRKICSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120

Query: 293 XXXXXXXXXXXXXXXXXXT-----MEKIVEKLKRFGYIDEANEKMES--MPNSNSSSVLE 135
                                   M KIVEKLK+FGY+ + +   ++          V+E
Sbjct: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIE 180

Query: 134 RGSVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           +GS+EDIFYVEEG+LPN+RGGFS+ESPLG+G     G +GEV+F
Sbjct: 181 KGSIEDIFYVEEGLLPNARGGFSKESPLGLGEE--VGSDGEVKF 222


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521987|gb|ESR33354.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score =  123 bits (308), Expect = 8e-26
 Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
 Frame = -3

Query: 626 MSLVPSCQICQ-TSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNF--SVTQNTIRSDF 456
           M+LVPS Q C  T+  DSFQ+S SK H   FH  R G S   + H F  + + N+     
Sbjct: 1   MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNFSSNSAHEKN 60

Query: 455 TPGKYPQRXXXXXXXXXXNDGCRN------WIDKWSEDYQPKLPKRPQAVLDYRNSDDEM 294
           TP K               D   N      W+ KW++  +    K PQA ++YR ++ ++
Sbjct: 61  TPRKICSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120

Query: 293 XXXXXXXXXXXXXXXXXXT-----MEKIVEKLKRFGYIDEANEKMES--MPNSNSSSVLE 135
                                   M KIVEKLK+FGY+ + +   ++          V+E
Sbjct: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIE 180

Query: 134 RGSVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           +GS+EDIFYVEEG+LPN+RGGFS+ESPLG+G     G +GEV+F
Sbjct: 181 KGSIEDIFYVEEGLLPNARGGFSKESPLGLGEE--VGSDGEVKF 222


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
           gi|449504099|ref|XP_004162252.1| PREDICTED:
           chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
          Length = 874

 Score =  121 bits (304), Expect = 2e-25
 Identities = 82/221 (37%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNF-----SVTQNTIRS 462
           M+L+ S     T+F D+FQ      H     LL+YGSS   R  +F      +T +T  +
Sbjct: 1   MALLHSRLCHATNFFDTFQTEFHSSHI----LLKYGSSVVFRNRSFCSSFYGLTTDTFSN 56

Query: 461 DFTPGKYPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRNSDDE----- 297
             + G    R          N    +WID+W+E  +   PK P+AVLDY +SD+      
Sbjct: 57  GISYGSLSSRTPVYRYNLRRNLSRVSWIDRWNETAKRNRPKPPRAVLDYPSSDENEVSIS 116

Query: 296 ---MXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGS 126
                                 TMEKIV KLK+FGYID+ N++            +E+GS
Sbjct: 117 STGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYIDDENKE------KGEERAIEKGS 170

Query: 125 VEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           VEDI Y+EEG+LPN+RGGFS+ESP+  G    FG +GEVRF
Sbjct: 171 VEDILYIEEGMLPNTRGGFSKESPM--GDENMFGSDGEVRF 209


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  119 bits (297), Expect = 1e-24
 Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
 Frame = -3

Query: 626 MSLVPSCQICQ-TSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNF---SVTQNTIRSD 459
           M+LVPS Q C  T+  DSFQ+S SK H   FH  R G S  P K+ F   + + N+    
Sbjct: 1   MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHS-IPLKNRFFYQNFSSNSAHEK 59

Query: 458 FTPGKYPQRXXXXXXXXXXNDGCRN------WIDKWSEDYQPKLPKRPQAVLDYRNSDDE 297
             P K               D   N      W+ KW++  +    K PQA ++YR ++ +
Sbjct: 60  NPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVD 119

Query: 296 MXXXXXXXXXXXXXXXXXXT-----MEKIVEKLKRFGYIDEANEKMES--MPNSNSSSVL 138
           +                        M KIVEKLK+FGY+ + +   ++          V+
Sbjct: 120 LSALGFARTDSDGNGVGGVDDGGNTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVI 179

Query: 137 ERGSVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           E+GS+EDIFYVEEG+LPN+RGGFS+ESPLG+G     G +GEV+F
Sbjct: 180 EKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEE--VGSDGEVKF 222


>ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cicer arietinum]
          Length = 838

 Score =  116 bits (290), Expect = 9e-24
 Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 1/209 (0%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFTPG 447
           MSLVP+ Q+    F+DSF  S    +++RF                  T  T  ++FT  
Sbjct: 1   MSLVPTRQL--HPFIDSFHTSSPSFNSLRFFTYNL------------TTYKTPSTNFTFK 46

Query: 446 KYPQRXXXXXXXXXXNDGCRNWIDKWSE-DYQPKLPKRPQAVLDYRNSDDEMXXXXXXXX 270
           KYP                  W+  W++   +   PK P+AVL+YRNS +          
Sbjct: 47  KYP-------ILPRNTFSTHTWLKHWNQPSSKHNRPKPPRAVLNYRNSGNGHSSKSHFSS 99

Query: 269 XXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIFYVEEGIL 90
                     TM++IVEKLK+FGY D+ ++  E   ++    V+E+GSVEDIFYVEEGIL
Sbjct: 100 SDDEDNNGGSTMDRIVEKLKKFGYDDDDDD--EKKDHNTKERVIEKGSVEDIFYVEEGIL 157

Query: 89  PNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           PN++GGFS ESP G+G  G+ G  GEVRF
Sbjct: 158 PNTKGGFSSESPFGVGRFGSDG--GEVRF 184


>ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [Amborella trichopoda]
           gi|548841355|gb|ERN01418.1| hypothetical protein
           AMTR_s00002p00265220 [Amborella trichopoda]
          Length = 882

 Score =  103 bits (257), Expect = 6e-20
 Identities = 74/214 (34%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSSNSPRKHNFSVTQNTIRSDFTPG 447
           M+  PS  +  T+ LDS  ++ S+ +  R  + R   ++     N       + S     
Sbjct: 1   MAFTPSRPLYPTALLDSLHSTWSRFNGSRLQITRLQRTHVSSYLNTITNSKDLESPEKIS 60

Query: 446 KYPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKLPKRPQAVLDYRN----SDDEMXXXXX 279
             P              G  +WI KW+      LPKRP+AVLDYR+    SD++      
Sbjct: 61  PNPHCNGVIAEKTTQVQG--HWIHKWTGSQCRNLPKRPKAVLDYRDNGVSSDEQEDINSK 118

Query: 278 XXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANE--KMESMPNSNSSSVLERGSVEDIFYV 105
                        TM++IV+KLKRFG++DE      ME  P        ERGSVED+FY 
Sbjct: 119 DDELGFEEEAEKSTMDQIVDKLKRFGFMDERKTGLDMERRP--------ERGSVEDVFYA 170

Query: 104 EEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           E G+LPNSRGG S +SP G+        NGEVRF
Sbjct: 171 EPGVLPNSRGGLSLDSPNGV----LERENGEVRF 200


>ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
           truncatula] gi|355479830|gb|AES61033.1| Chloroplastic
           group IIA intron splicing facilitator CRS1 [Medicago
           truncatula]
          Length = 838

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 57/127 (44%), Positives = 75/127 (59%)
 Frame = -3

Query: 383 WIDKWSEDYQPKLPKRPQAVLDYRNSDDEMXXXXXXXXXXXXXXXXXXTMEKIVEKLKRF 204
           W+ +W+E  +PK P+    VL+Y+ S +                     M++IVEKLK+F
Sbjct: 66  WLKRWNEQNRPKPPR---GVLNYQGSGNG-HSSKSDFDSSDDEDFGGSRMDRIVEKLKKF 121

Query: 203 GYIDEANEKMESMPNSNSSSVLERGSVEDIFYVEEGILPNSRGGFSRESPLGIGGSGAFG 24
           GY  + NE      N     V+E+GS+EDIFYVEEG+LPN+RGGFS ESP GIG  G+ G
Sbjct: 122 GYESDENE------NIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESPFGIGSYGS-G 174

Query: 23  YNGEVRF 3
             GEVRF
Sbjct: 175 DGGEVRF 181


>ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Glycine max]
          Length = 835

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 79/218 (36%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRF--HLLRYGSSNSP------RKHNFSVTQNT 471
           M+LVP+       F DSF +S    H++RF   L R+  + SP      RK  F    N 
Sbjct: 1   MALVPT-----RPFFDSFHSS-PNFHSLRFCNSLFRHSLTPSPNSTFLRRKPLFIFRCNP 54

Query: 470 IRSDFTPGKYPQRXXXXXXXXXXNDGCRNWIDKWSEDYQPKL-PKRPQAVLDY-RNSDDE 297
            +S  T                     ++W+ +W++       PK P AVLDY  N    
Sbjct: 55  AKSFSTD--------------------KHWLKRWNDPTNNHARPKPPCAVLDYSENGHAS 94

Query: 296 MXXXXXXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVED 117
                              TM++IVEKLK+FGY+++  +        N   V+E+GSVED
Sbjct: 95  KSGLASSDEEGGDGNTGGSTMDRIVEKLKKFGYVEDGIQ--------NKERVIEKGSVED 146

Query: 116 IFYVEEGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           IFYVEEG+LPNSRGGFS ESPLG G  G+   + EVRF
Sbjct: 147 IFYVEEGMLPNSRGGFSSESPLGFGSFGS--DDREVRF 182


>ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
           gi|332643191|gb|AEE76712.1| CRM family member 3A
           [Arabidopsis thaliana]
          Length = 881

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 73/213 (34%), Positives = 95/213 (44%), Gaps = 5/213 (2%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSS---NSPRKHNFSVTQNTIRSDF 456
           M++ PS   C T+    F  S       RF  LRY SS    S +   FS   + I S  
Sbjct: 1   MAMKPSLHFCPTTVTKKFVYSFQSSFCFRF--LRYSSSISLGSCKGVTFSSRNDQIAS-- 56

Query: 455 TPGKYPQRXXXXXXXXXXNDGCRN--WIDKWSEDYQPKLPKRPQAVLDYRNSDDEMXXXX 282
                             +  C N  W++ W+   +   PK P+ V++YR          
Sbjct: 57  -------------RRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEGRFSGSEI 103

Query: 281 XXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIFYVE 102
                         TMEKIVEKLK++GY++E   K            +E+GSVEDIFYVE
Sbjct: 104 VSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNK-----EIEQERRIEKGSVEDIFYVE 158

Query: 101 EGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           EG LPN+RGGF+ ES L  GG    G NG+V F
Sbjct: 159 EGKLPNTRGGFTEESLL--GGENVIGSNGDVGF 189


>dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
          Length = 717

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 73/213 (34%), Positives = 95/213 (44%), Gaps = 5/213 (2%)
 Frame = -3

Query: 626 MSLVPSCQICQTSFLDSFQNSLSKLHAVRFHLLRYGSS---NSPRKHNFSVTQNTIRSDF 456
           M++ PS   C T+    F  S       RF  LRY SS    S +   FS   + I S  
Sbjct: 1   MAMKPSLHFCPTTVTKKFVYSFQSSFCFRF--LRYSSSISLGSCKGVTFSSRNDQIAS-- 56

Query: 455 TPGKYPQRXXXXXXXXXXNDGCRN--WIDKWSEDYQPKLPKRPQAVLDYRNSDDEMXXXX 282
                             +  C N  W++ W+   +   PK P+ V++YR          
Sbjct: 57  -------------RRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEGRFSGSEI 103

Query: 281 XXXXXXXXXXXXXXTMEKIVEKLKRFGYIDEANEKMESMPNSNSSSVLERGSVEDIFYVE 102
                         TMEKIVEKLK++GY++E   K            +E+GSVEDIFYVE
Sbjct: 104 VSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNK-----EIEQERRIEKGSVEDIFYVE 158

Query: 101 EGILPNSRGGFSRESPLGIGGSGAFGYNGEVRF 3
           EG LPN+RGGF+ ES L  GG    G NG+V F
Sbjct: 159 EGKLPNTRGGFTEESLL--GGENVIGSNGDVGF 189