BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00006552
         (1970 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1259   0.0  
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...  1243   0.0  
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ...  1240   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1234   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1234   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  1234   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  1233   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  1233   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  1233   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  1233   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  1232   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  1232   0.0  
emb|CBI18915.3| unnamed protein product [Vitis vinifera]             1232   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  1230   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  1228   0.0  
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas...  1227   0.0  
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...  1227   0.0  
gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus...  1224   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  1222   0.0  
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun...  1221   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1259 bits (3258), Expect = 0.0
 Identities = 611/655 (93%), Positives = 634/655 (96%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL+DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQAQ+IRNPK+RLKK+L+ACK+KSKCEGGDEI+ Q  + +EP+KK+RGGCGAQQPKLTI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+K Q+KKNDD EQLPEPVERKQQLSAERVL++LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L+R SAWHSE+ETGFITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score = 1243 bits (3215), Expect = 0.0
 Identities = 600/655 (91%), Positives = 631/655 (96%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL+DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +I+NPK RLKK+L+ACK+K+KCEGGDEIDVQGQ+ EEP+KK+RGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+K Q+KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC  LGL+PKYAR
Sbjct: 181  EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQER+GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP I+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            LIR +AWH ++E G ITPGDT+VRIEKGELLSGTLCKKTLGTS+GSLIHVIWEEV
Sbjct: 601  LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEV 655


>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|590702285|ref|XP_007046586.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 1240 bits (3209), Expect = 0.0
 Identities = 600/655 (91%), Positives = 629/655 (96%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL+DEE+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +I+NPK+RLKK+L+ACK+KSKCEGGDEIDVQGQ+ EEP+KK+RGGCGAQQPKL+I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            DGMKM+AE+K Q+K+NDDQEQLPEPVERKQ L+AERVLS+LKRISDEDC  LGLNPK+AR
Sbjct: 181  DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTH LAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L+R SAWHSE ETGFITPGDT VRIEKGELLSGTLCKK LGTS+GSLIHVIWEEV
Sbjct: 601  LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEV 655


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 600/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK AGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL IMR VCFNCSKIL DEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RI+NPK+RL+K+L+ACK+K+KCEGGDEIDVQGQ+ ++P+KK+RGGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM AE+KAQ+KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC  LGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R SAWHSE+ETG ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEV
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEV 655


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 600/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK AGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL IMR VCFNCSKIL DEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RI+NPK+RL+K+L+ACK+K+KCEGGDEIDVQGQ+ ++P+KK+RGGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM AE+KAQ+KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC  LGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R SAWHSE+ETG ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEV
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEV 655


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 597/655 (91%), Positives = 627/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL IMRCVCFNCSKIL+DE D K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RLKK+L+ACK+KSKCEGGDEID+ GQ+ +EP+KK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            LIR S+WHSE+E G ITPGDT+VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 597/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL+DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +IRNPK+RLKK+L+ACK+K+KCEGGDEIDV GQ+ EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R +AWH++ + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 597/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL+DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +IRNPK+RLKK+L+ACK+K+KCEGGDEIDV GQ+ EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R +AWH++ + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 597/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL+DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +IRNPK+RLKK+L+ACK+K+KCEGGDEIDV GQ+ EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R +AWH++ + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 597/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL+DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +IRNPK+RLKK+L+ACK+K+KCEGGDEIDV GQ+ EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R +AWH++ + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 1232 bits (3188), Expect = 0.0
 Identities = 597/655 (91%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL+DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +IRNPK+RLKK+L+ACK+K+KCEGGDEIDV GQ+ EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R +AWH++ + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 1232 bits (3188), Expect = 0.0
 Identities = 592/655 (90%), Positives = 628/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VL+I+RCVCFNCSKIL+DE+DPK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RL+K+L+ACK+K+KCEGGDEIDVQGQ+ EEP+KK+RGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            DGMKMVAE+K QKKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC  LGLNP++AR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQ L         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L+R SAWH+++E G+ITPGDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score = 1232 bits (3188), Expect = 0.0
 Identities = 611/703 (86%), Positives = 634/703 (90%), Gaps = 48/703 (6%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDE---- 351
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL+DE    
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120

Query: 352  --------------------------EDPKFKQAQRIRNPKHRLKKVLEACKSKSKCEGG 453
                                      ED KFKQAQ+IRNPK+RLKK+L+ACK+KSKCEGG
Sbjct: 121  VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180

Query: 454  DEIDVQGQEMEEPIKKTRGGCGAQQPKLTIDGMKMVAEFKAQKKKNDDQEQLPEPVERKQ 633
            DEI+ Q  + +EP+KK+RGGCGAQQPKLTI+GMKM+AE+K Q+KKNDD EQLPEPVERKQ
Sbjct: 181  DEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQ 240

Query: 634  QLSAERVLSILKRISDEDCTALGLNPKYARPDWMILQVLXXXXXXXXXSVMMDTSSRSE- 810
            QLSAERVL++LKRISDEDC  LGLNPKYARPDWMILQVL         SVMMDTSSRSE 
Sbjct: 241  QLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEA 300

Query: 811  -----------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 939
                             DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH+AT
Sbjct: 301  SLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVAT 360

Query: 940  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 1119
            YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID
Sbjct: 361  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 420

Query: 1120 ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLK 1299
            ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLK
Sbjct: 421  ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLK 480

Query: 1300 KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 1479
            KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN
Sbjct: 481  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 540

Query: 1480 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 1659
            ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT
Sbjct: 541  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 600

Query: 1660 FIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRMSAWHSEAE 1839
            FIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINL+R SAWHSE+E
Sbjct: 601  FIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESE 660

Query: 1840 TGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            TGFITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 661  TGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEV 703


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 591/655 (90%), Positives = 627/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VL+I+RCVCFNCSKIL+DE+DPK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RL+K+L+ACK+K+KCEGGDEIDVQG + EEP+KK+RGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            DGMKMVAE+K QKKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC  LGLNP++AR
Sbjct: 181  DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQ L         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L+R SAWH+++E G+ITPGDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 591/655 (90%), Positives = 628/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKP GLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKIL+DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA +I+NPK+RLKK+L+ACK+K+KCEGGD+IDV  Q+ +EP+KK+RGGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KKNDDQEQLPEPVERKQ L+AERVL +LKRISD+DC  LG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            LIR +AWHS++E G ITPGDT+VRIEKGELLSGT+CKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
            gi|561031277|gb|ESW29856.1| hypothetical protein
            PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 1227 bits (3174), Expect = 0.0
 Identities = 593/655 (90%), Positives = 624/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK AGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL IMRCVCFNCSKIL+DE D K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RLKK+L+ACK+KSKCEGGDEID+ GQ+ +EP+KK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMK++AE+KAQ+KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP PLWTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            LIR S+WHSE+E G ITPGDT+VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEV
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEV 655


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like isoform X2
            [Glycine max]
          Length = 1827

 Score = 1227 bits (3174), Expect = 0.0
 Identities = 594/655 (90%), Positives = 624/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL IMRCVCFNCSKIL+DE D K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RLKK+L+ACK+KSKCEGGDEID+ GQ+ EE +KK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM+AE+KAQ+KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC  LGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            LIR S+WHSE+E G ITPGDT+VRIEKGELL+GTLCKKTLGT +G LIHVIWEEV
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEV 655


>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
          Length = 1842

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 591/655 (90%), Positives = 625/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEHSETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VL+I+RCVCFNCSKIL+DEE+PK
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RIRNPK+RL+K+L+ACK+K+KC+GGDEID   Q+ EEP+KK+RGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            DGMKMVAE+K QKKK+DDQ+Q+PEPVERKQQLSAE+VLSILKRI+DEDC  LGLNPK+AR
Sbjct: 181  DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L+R SAWH E E GFITPGDT VRIEKGELL+GTLCKK LGTSTGSLIHVIWEEV
Sbjct: 601  LLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEV 655


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 1222 bits (3163), Expect = 0.0
 Identities = 600/655 (91%), Positives = 623/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVVQIEHSET   GKPK AGLSDPRLGTI
Sbjct: 1    MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FK A RI+NPK+RLKK+L+ACK+K+KCEGGDEIDVQ  + +EP+KK+RGGCGAQQPKLTI
Sbjct: 121  FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQ--DTDEPLKKSRGGCGAQQPKLTI 178

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            DGMKMVAE+KAQ+KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC  LGLNPKYAR
Sbjct: 179  DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 239  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 359  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 479  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 539  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R SAWHSE+ETG ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEV
Sbjct: 599  LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEV 653


>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
            gi|462398589|gb|EMJ04257.1| hypothetical protein
            PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 1221 bits (3160), Expect = 0.0
 Identities = 598/655 (91%), Positives = 624/655 (95%)
 Frame = +1

Query: 4    MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 183
            MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVVQIEHSET   GKPK AGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 184  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLNIMRCVCFNCSKILSDEEDPK 363
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 364  FKQAQRIRNPKHRLKKVLEACKSKSKCEGGDEIDVQGQEMEEPIKKTRGGCGAQQPKLTI 543
            FKQA RI++PK+RLKK+L+ACK+K+KC+GGDEIDVQGQE EEP+KK+RGGCGAQQPKL+I
Sbjct: 121  FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180

Query: 544  DGMKMVAEFKAQKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCTALGLNPKYAR 723
            +GMKM AE+KAQ+KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDED   LGLNPKYAR
Sbjct: 181  EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240

Query: 724  PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 903
            PDWMILQVL         SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 904  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1083
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 1084 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1263
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 1264 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1443
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 1444 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1623
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 1624 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 1803
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 1804 LIRMSAWHSEAETGFITPGDTVVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 1968
            L R SAWHSEAE+G ITPGDT VRIEKGELL+GTLCKK LGTSTGSLIHVIWEEV
Sbjct: 601  LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEV 655