BLASTX nr result
ID: Sinomenium21_contig00005506
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00005506
(1276 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 624 e-176
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 621 e-175
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera] 618 e-174
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 617 e-174
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 603 e-170
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 602 e-169
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 601 e-169
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 600 e-169
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 599 e-169
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 597 e-168
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 596 e-168
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 595 e-167
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 595 e-167
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 593 e-167
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 591 e-166
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 591 e-166
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 590 e-166
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 589 e-165
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 584 e-164
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] 583 e-164
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 624 bits (1609), Expect = e-176
Identities = 309/404 (76%), Positives = 335/404 (82%)
Frame = +3
Query: 63 YVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSMR 242
YVFSDGIGKIS + AHRVA KC KSS PSAFQIRY GYKGVVAVDPTS + LSLRKSM
Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583
Query: 243 KYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPLS 422
KY S N LDVL WSK+QP FLNRQLITLLSTLGVKDH+FEKKQ+ AVDQL+ IL DP++
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 423 ARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNGR 602
A+E LE+MSPGE+ NVLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIF+PNGR
Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703
Query: 603 SMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNPC 782
SMMGCLDETRTL YG+VFVQ+S G +Q G L R + S F+++GK+VVAKNPC
Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFRGSGSHHDNFILEGKIVVAKNPC 762
Query: 783 LHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXXX 962
LHPGDVRVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD
Sbjct: 763 LHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQ 822
Query: 963 XXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAESDKC 1142
MDYTPAPT ++DHDV IEEVEEYF NYI+NDSLGIIANAHT FADKE KA D C
Sbjct: 823 QINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPC 882
Query: 1143 VELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
ELA+LFSIAVDFPKTGVPAEIP L VKEYPDFM+K DKPTYE
Sbjct: 883 TELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYE 926
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 621 bits (1602), Expect = e-175
Identities = 303/405 (74%), Positives = 341/405 (84%)
Frame = +3
Query: 60 KYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSM 239
KYVFSDGIGK+SAEFA +VA KC +K + PSAFQIRY GYKGVVA DPTS K LSLR SM
Sbjct: 538 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 597
Query: 240 RKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPL 419
RKY S+ KLDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QL+ ILTDPL
Sbjct: 598 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 657
Query: 420 SARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNG 599
A+E LE+MSPGE+ N+LKE+L+CGYKPD EPFLSMMLQTFRA KLLELR KTRIFIPNG
Sbjct: 658 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 717
Query: 600 RSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNP 779
RSMMGCLDETRTLNYGQVFVQ+S G +Q G S+ ++ ++ F+V+G VVVAKNP
Sbjct: 718 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE--SSLFSSSRSRQRFIVQGLVVVAKNP 775
Query: 780 CLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXX 959
CLHPGDVRVL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 776 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 835
Query: 960 XXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAESDK 1139
MDYTPA + +DHDV+IE+VEEYF NYI+NDSLGIIANAHT FAD+E KA S+
Sbjct: 836 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEP 895
Query: 1140 CVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
C++LA+ FSIAVDFPKTGVPAEIPP LYVKEYPDFM+KPDKPTYE
Sbjct: 896 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYE 940
>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 618 bits (1594), Expect = e-174
Identities = 308/424 (72%), Positives = 340/424 (80%)
Frame = +3
Query: 3 VRRHXXXXXXXXXXXTNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYK 182
V +H +G YVFSDGIGKISAE AHRVA KC KSS PSAFQIRY GYK
Sbjct: 46 VAKHEIEIIPDIEIHRDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYK 105
Query: 183 GVVAVDPTSIKNLSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIF 362
GVVAVDPTS + LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGVKDH+F
Sbjct: 106 GVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVF 165
Query: 363 EKKQKEAVDQLNMILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTF 542
EKKQ+EAVDQL+ IL DPL A+E LE+MSPGE+ N+LKEMLMCGYKPD EPFLSMMLQTF
Sbjct: 166 EKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTF 225
Query: 543 RALKLLELRNKTRIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDN 722
RA KLLELR KTRIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L +
Sbjct: 226 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFYGS 284
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GKVVVAKNPCLHPGDVR+L AVDVP LHHMVDCVVFPQKG RPHP+ECSG
Sbjct: 285 GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSG 344
Query: 903 SDLDGDIYFVSWDXXXXXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGII 1082
SDLDGDIYFV WD MDYTPAPT ++DHDV IEEVEEYF NYI ND LGII
Sbjct: 345 SDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGII 404
Query: 1083 ANAHTAFADKELRKAESDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDK 1262
ANAHT FADKE KA C ELA+LFSIA++FPKTGVPAEIP L+VKEYPDFM+K +K
Sbjct: 405 ANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANK 464
Query: 1263 PTYE 1274
PTYE
Sbjct: 465 PTYE 468
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 617 bits (1591), Expect = e-174
Identities = 307/424 (72%), Positives = 340/424 (80%)
Frame = +3
Query: 3 VRRHXXXXXXXXXXXTNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYK 182
V +H +G YVFSDGIGKISAE AHRVA KC K+S PSAFQIRY GYK
Sbjct: 502 VAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYK 561
Query: 183 GVVAVDPTSIKNLSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIF 362
GVVAVDPTS + LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGVKDH+F
Sbjct: 562 GVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVF 621
Query: 363 EKKQKEAVDQLNMILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTF 542
EKKQ+EAVDQL+ IL DPL A+E LE+MSPGE+ N+LKEMLMCGYKPD EPFLSMMLQTF
Sbjct: 622 EKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTF 681
Query: 543 RALKLLELRNKTRIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDN 722
RA KLLELR KTRIF+PNGRSMMGCLDETRTL YG+VFVQ+S G +Q G L +
Sbjct: 682 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFYGS 740
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GKVVVAKNPCLHPGDVR+L AVDVP LHHMVDCVVFPQKG RPHP+ECSG
Sbjct: 741 GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSG 800
Query: 903 SDLDGDIYFVSWDXXXXXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGII 1082
SDLDGDIYFV WD MDYTPAPT ++DHDV IEEVEEYF NYI ND LGII
Sbjct: 801 SDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGII 860
Query: 1083 ANAHTAFADKELRKAESDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDK 1262
ANAHT FADKE KA C ELA+LFSIA++FPKTGVPAEIP L+VKEYPDFM+K +K
Sbjct: 861 ANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANK 920
Query: 1263 PTYE 1274
PTYE
Sbjct: 921 PTYE 924
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 603 bits (1556), Expect = e-170
Identities = 303/404 (75%), Positives = 328/404 (81%)
Frame = +3
Query: 63 YVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSMR 242
YVFSDGIGKIS + AHRVA KC KSS PSAFQIRY GYKGVVAVDPTS + LSLRKSM
Sbjct: 66 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 125
Query: 243 KYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPLS 422
KY S N LDVL WSK+QP FLNRQLITLLSTLGVKDH+FEKKQ+ AVDQL+ IL DP++
Sbjct: 126 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 185
Query: 423 ARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNGR 602
A+E LE+MSPGE+ NVLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIF+PNGR
Sbjct: 186 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 245
Query: 603 SMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNPC 782
SMMGCLDETRTL YG+VFVQ+S G +Q G L R + S F+++GK+VVAKNPC
Sbjct: 246 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFRGSGSHHDNFILEGKIVVAKNPC 304
Query: 783 LHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXXX 962
LHPGDVRVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD
Sbjct: 305 LHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQ 364
Query: 963 XXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAESDKC 1142
MDYTPAPT +EVEEYF NYI+NDSLGIIANAHT FADKE KA D C
Sbjct: 365 QINPMDYTPAPT---------KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPC 415
Query: 1143 VELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
ELA+LFSIAVDFPKTGVPAEIP L VKEYPDFM+K DKPTYE
Sbjct: 416 TELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYE 459
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 602 bits (1551), Expect = e-169
Identities = 298/405 (73%), Positives = 329/405 (81%)
Frame = +3
Query: 60 KYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSM 239
KYVFSDGIGKIS EFA +VA KC PSAFQIRY GYKGVVAVDPTS LSLR SM
Sbjct: 604 KYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSM 663
Query: 240 RKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPL 419
RKY+S N KLDVL +SKFQPCFLNRQ+ITLLSTLGV+D++FE KQK+AV QL+ IL DP
Sbjct: 664 RKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPE 723
Query: 420 SARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNG 599
SA E LE+MSPGE+VNVLKEML CGY PD EPFLSMMLQTFR LKL EL+ KTRIFIPNG
Sbjct: 724 SAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNG 783
Query: 600 RSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNP 779
RSMMGCLDET L YGQVFVQ S IGN++ I ++ S+QR VV GKV+VAKNP
Sbjct: 784 RSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNP 843
Query: 780 CLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXX 959
CLHPGDVR+L A+DVP LHHMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWD
Sbjct: 844 CLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPC 903
Query: 960 XXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAESDK 1139
M+Y PAP +DH+V IEE+EEYF NY+INDSLGIIANAHT FADKE KA+S
Sbjct: 904 HQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTP 963
Query: 1140 CVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
CV+LA LFS+AVDFPKTGVPA+IP LYVKEYPDFMDK DKPTY+
Sbjct: 964 CVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQ 1008
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 601 bits (1549), Expect = e-169
Identities = 302/406 (74%), Positives = 332/406 (81%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G KYVFSDGIGKISA+FA RVAKKC K+ PSAFQIRY GYKGVVAVDPTS LSLRK
Sbjct: 523 GIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRK 582
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM KY S+N KLDVL SK+QPCFLNRQLITLLSTL V+DH+F KKQ+ AV QLN ILTD
Sbjct: 583 SMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTD 642
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A E L++MS GE NVLKE+LMCGYKP+VEPFLSMMLQTFRA KLLELR KTRIFIP
Sbjct: 643 PLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIP 702
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
+GR+MMGCLDETRTL YGQVFVQ S +Q + + ++S F+++GKVVVAK
Sbjct: 703 DGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICI----HSSLDSCFIIEGKVVVAK 758
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 759 NPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELI 818
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTPAP MD DV IEEVEEYFVNYI+NDSLGIIANAHT FAD +L KA S
Sbjct: 819 PPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMS 878
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTY 1271
C++LA+LFSIAVDFPKTGVPAEIPP LY KEYPDFM+KPDK TY
Sbjct: 879 HPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTY 924
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 600 bits (1547), Expect = e-169
Identities = 300/408 (73%), Positives = 333/408 (81%)
Frame = +3
Query: 51 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 230
+G YVFSDGIGKISA+FA +VA KC + PSAFQIR G+KGVVAVDPTS K LSLR
Sbjct: 524 DGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLR 583
Query: 231 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 410
SM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV DH FE+KQ+E VDQLN ILT
Sbjct: 584 GSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILT 643
Query: 411 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 590
DPL A+E LE+MSPGE+ N+LKEML+CGY+PD EPFLSMMLQTFRA KLLELR K+RIF+
Sbjct: 644 DPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFV 703
Query: 591 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVA 770
NGRSMMGCLDETRTL+YGQVFVQVS + SEQR F+V+GKVVVA
Sbjct: 704 ANGRSMMGCLDETRTLDYGQVFVQVS----------------GSRSEQR-FIVQGKVVVA 746
Query: 771 KNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXX 950
KNPCLHPGDVRVL AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 747 KNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPEL 806
Query: 951 XXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAE 1130
MDY+PAPT ++H+V IEEVEEYF NYI+NDSLGIIANAHT FAD+E RKA
Sbjct: 807 IPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAM 866
Query: 1131 SDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
S +C LA+LFSIAVDFPKTGVPAEIP L VKEYPDFM+KPDKPTY+
Sbjct: 867 SSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQ 914
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 599 bits (1544), Expect = e-169
Identities = 294/408 (72%), Positives = 331/408 (81%)
Frame = +3
Query: 51 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 230
+G KYVFSDGIGKISAEFA +VA KC +K PSAFQIR G+KGVVA+DPTS LSLR
Sbjct: 524 DGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583
Query: 231 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 410
KSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQLN +LT
Sbjct: 584 KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLT 643
Query: 411 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 590
DPL A+E LE+MSPGE+ N+LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIF+
Sbjct: 644 DPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFV 703
Query: 591 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVA 770
GRSMMGCLDETRTLNYGQVFVQ S + +R F+V+GKV+VA
Sbjct: 704 QKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVA 746
Query: 771 KNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXX 950
KNPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD
Sbjct: 747 KNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPEL 806
Query: 951 XXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAE 1130
MDY+PA TT +DH+V IEE+EEYF NYI+NDSLGII+NAHTAFAD+E KA
Sbjct: 807 IPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAM 866
Query: 1131 SDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
S C+ELA+LFSIAVDFPKTGVPAEIP L VKEYPDFM+KPDKP+Y+
Sbjct: 867 SRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQ 914
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 597 bits (1539), Expect = e-168
Identities = 301/425 (70%), Positives = 334/425 (78%), Gaps = 2/425 (0%)
Frame = +3
Query: 3 VRRHXXXXXXXXXXXTNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYK 182
V RH +G Y+FSDGIGKISA+FAHRV KC ++ + PS+FQIRY GYK
Sbjct: 504 VGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYT-PSSFQIRYGGYK 562
Query: 183 GVVAVDPTSIKNLSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIF 362
GVVAVDP S LSLRKSM KY S NIKLDVL WSK+QPC+LNRQL+TLLSTLGV D +
Sbjct: 563 GVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVL 622
Query: 363 EKKQKEAVDQLNMILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTF 542
E+KQ EAVDQL+ IL D L A+E LE+MSPGE+ N+LKEML CGY PD EPFLSMMLQTF
Sbjct: 623 EQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTF 682
Query: 543 RALKLLELRNKTRIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIR 716
RA KLL+LR +TRIFIPNGR+MMGCLDE+RTL YGQVFVQ S G +QF + H
Sbjct: 683 RASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESH---PFN 739
Query: 717 DNTSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNEC 896
D+ S F++KG VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNEC
Sbjct: 740 DSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 799
Query: 897 SGSDLDGDIYFVSWDXXXXXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLG 1076
SGSDLDGDIYFV WD MDYTPAPTT +DHDV IEEVEEYF NYIINDSLG
Sbjct: 800 SGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLG 859
Query: 1077 IIANAHTAFADKELRKAESDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKP 1256
IIANAH FAD+E A SD C +LAQLFSIAVDFPKTGVPAEIP +L KEYPDFM+KP
Sbjct: 860 IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 919
Query: 1257 DKPTY 1271
DKPTY
Sbjct: 920 DKPTY 924
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 596 bits (1537), Expect = e-168
Identities = 292/408 (71%), Positives = 331/408 (81%)
Frame = +3
Query: 51 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 230
+G KYVF DGIGKISAEFA +VA KC +K PSAFQIR G+KGVVA+DPTS LSLR
Sbjct: 524 DGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583
Query: 231 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 410
KSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D+ FEKKQ+E VDQLN +LT
Sbjct: 584 KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLT 643
Query: 411 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 590
DPL A+E LE+MSPGE+ N+LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIF+
Sbjct: 644 DPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFV 703
Query: 591 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVA 770
GRSMMGCLDETRTLNYGQVFVQ S + +R F+V+GKV+VA
Sbjct: 704 QKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVA 746
Query: 771 KNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXX 950
KNPCLHPGDVRVL+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD
Sbjct: 747 KNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPEL 806
Query: 951 XXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAE 1130
MDY+PA TT +DH+V IEE+EEYF NYI+NDSLGII+NAHTAFAD+E KA
Sbjct: 807 IPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAM 866
Query: 1131 SDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
S C+ELA+LFSIAVDFPKTGVPAEIP L VKE+PDFM+KPDKP+Y+
Sbjct: 867 SRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQ 914
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 595 bits (1535), Expect = e-167
Identities = 293/405 (72%), Positives = 325/405 (80%)
Frame = +3
Query: 60 KYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRKSM 239
+YVFSDGIGKISAEFA +VAKKC + PSAFQIRY GYKGVVAVDP S K LSLRKSM
Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590
Query: 240 RKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTDPL 419
K+ S N KLDVL WSK+QPC+LNRQ+ITLLSTLGVKD++FEKKQ+E VD+L+ ILTDPL
Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650
Query: 420 SARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIPNG 599
A E L +M+PGE+ N+LK++L+CGYKPD EPFLSMMLQ FRA KLLELR KTRIFIP G
Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710
Query: 600 RSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAKNP 779
RSMMGCLDETRTL YGQV VQ S + T + +++ G VVVAKNP
Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYS----------------NPTMPGKRYIITGPVVVAKNP 754
Query: 780 CLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXXXX 959
CLHPGDVRVLQAV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYF+ WD
Sbjct: 755 CLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPP 814
Query: 960 XXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAESDK 1139
MDYTP P I+DHDV IEEVEEYF NYI+NDSLGIIANAHTAFADKE KA SD
Sbjct: 815 RTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDP 874
Query: 1140 CVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
C+ELA+ FSIAVDFPKTG+ AEIP LYVKEYPDFMDKPDKPTYE
Sbjct: 875 CIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYE 919
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 595 bits (1533), Expect = e-167
Identities = 295/407 (72%), Positives = 332/407 (81%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G +Y+FSDGIGKISAEFA +VA KC K PSAFQIRYAGYKGVVAVDPTS K LSLR+
Sbjct: 532 GTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRR 591
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM KY S+N KLDVL SK+QPCFLNRQLITLLSTLGV DH FE+KQ+EAVDQL+ +LTD
Sbjct: 592 SMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTD 651
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A+E LE+MSPGE+ N+LKEML+CGY+PD EPFLSMMLQTFRA KLLELR KTRIFIP
Sbjct: 652 PLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 711
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
NGRSMMGCLDETRTL +GQVFV+ S G++ + + + +++KG VVVAK
Sbjct: 712 NGRSMMGCLDETRTLEHGQVFVKFS--GSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAK 769
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGD+R+L+AVDVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 770 NPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELI 829
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTP P +DHDV IEEVEEYF NYI+NDSLG+IANAHTA ADKE KA S
Sbjct: 830 PSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMS 889
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
+ CVELA+ FSIAVDFPKTGVPAEIP L +EYPDFM+KPDKP+YE
Sbjct: 890 EPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYE 936
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 593 bits (1528), Expect = e-167
Identities = 297/425 (69%), Positives = 334/425 (78%), Gaps = 2/425 (0%)
Frame = +3
Query: 3 VRRHXXXXXXXXXXXTNGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYK 182
V RH +G Y+FSDGIGKISA+FA RVA KC ++ + PS FQIRY GYK
Sbjct: 505 VGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYT-PSCFQIRYGGYK 563
Query: 183 GVVAVDPTSIKNLSLRKSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIF 362
GVVAVDP S LSLR SM KY S NIKLDVL WSK+QPC+LNRQL+TLLSTLGVKD +F
Sbjct: 564 GVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVF 623
Query: 363 EKKQKEAVDQLNMILTDPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTF 542
E+KQ EAVDQL+ IL D L A+E LE+MSPGE+ N+LKEML CGY PD EPFLSMMLQTF
Sbjct: 624 EQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTF 683
Query: 543 RALKLLELRNKTRIFIPNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIR 716
RA KLL+LR ++RIFIPNGR+MMGCLDE+RTL YGQVFVQ + G +QF + H
Sbjct: 684 RASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESH---PFN 740
Query: 717 DNTSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNEC 896
D+ S F+++G VVVAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNEC
Sbjct: 741 DSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 800
Query: 897 SGSDLDGDIYFVSWDXXXXXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLG 1076
SGSDLDGDIYFV WD MDYTPAP+T +DHDV IEEVEEYF NYI+NDSLG
Sbjct: 801 SGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLG 860
Query: 1077 IIANAHTAFADKELRKAESDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKP 1256
IIANAH FAD+E A SD C +LAQLFSIAVDFPKTGVPAEIP +L KEYPDFM+KP
Sbjct: 861 IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 920
Query: 1257 DKPTY 1271
DKPTY
Sbjct: 921 DKPTY 925
>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 591 bits (1524), Expect = e-166
Identities = 292/409 (71%), Positives = 330/409 (80%), Gaps = 2/409 (0%)
Frame = +3
Query: 51 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 230
+G YVFSDGIGKISA+FAHRVAKKC ++ + PSAFQIRY GYKGVVAVDP S LSLR
Sbjct: 211 HGTNYVFSDGIGKISADFAHRVAKKCGLQHT-PSAFQIRYGGYKGVVAVDPYSPMKLSLR 269
Query: 231 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 410
KSM KY S N KLDVL WSK+QPC+LNRQL+TL+STLGVKD +F++KQ EAV QL+ IL
Sbjct: 270 KSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILH 329
Query: 411 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 590
D L A+E L++MSPGE+ N+LKEML CGY PD EPFLSMMLQTFRA KLL+LR +TRIFI
Sbjct: 330 DSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFI 389
Query: 591 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQF--QGHVPLSIRDNTSEQRTFVVKGKVV 764
P GRSMMGCLDE+RTL YGQVFVQ + G +QF + H D+ S F++KG VV
Sbjct: 390 PKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESH---HFNDSGSANYNFILKGNVV 446
Query: 765 VAKNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDX 944
VAKNPCLHPGD+RVL+AVDVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD
Sbjct: 447 VAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP 506
Query: 945 XXXXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRK 1124
MDYTPAP+ +DHDV IEEVEEYF NY++ND LG+IANAH FAD+E
Sbjct: 507 DLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNM 566
Query: 1125 AESDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTY 1271
A SD C+ELAQLFSIAVDFPKTGVPAEIP +L KEYPDFM+KPDK TY
Sbjct: 567 AMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTTY 615
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 591 bits (1523), Expect = e-166
Identities = 293/407 (71%), Positives = 323/407 (79%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G +YVFSDGIGKISAEFA RVAKKC + PSAFQIRY GYKGVVAVDP S K LSLRK
Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM K+ S+N KLDVL WSK+QPC++NRQLITLLSTLGV+D +FEKKQ+E VD+L+ ILTD
Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTD 649
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A E L +M+PGE+ N+LK +++CGYKPD EPFLSMMLQ FRA KLLELR KTRIFI
Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
GRSMMGCLDETRTL YGQV VQ S D R F++ G VVVAK
Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGDVRVL+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTP P I+DHDV IEEVEEYF NYI+NDSLGIIANAHTAFADKE KA S
Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
D C+ELA+ FS+AVDFPKTGV AEIP LYVKEYPDFM+KPDKPTYE
Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYE 920
>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 590 bits (1521), Expect = e-166
Identities = 292/407 (71%), Positives = 323/407 (79%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G +YVFSDGIGKISAEFA RVAKKC + PSAFQIRY GYKGVVAVDP S K LSLRK
Sbjct: 520 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 579
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM K+ S+N KLDVL WSK+QPC++NRQLITLLSTLG+KD +FEKKQ+E VD+L+ ILTD
Sbjct: 580 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAILTD 639
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A E L +M+PGE+ N+LK +++CGYKPD EPFLSMMLQ FRA KLLELR KTRIFI
Sbjct: 640 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 699
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
GRSMMGCLDETRTL YGQV VQ S D R F++ G VVVAK
Sbjct: 700 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 743
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGDVRVL+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 744 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 803
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTP P I+DHDV IEEVEEYF NYI+NDSLGIIANAHTAFADKE KA S
Sbjct: 804 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 863
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
D C+ELA+ FS+AVDFPKTGV AEIP L+VKEYPDFM+KPDKPTYE
Sbjct: 864 DPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 910
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 589 bits (1518), Expect = e-165
Identities = 292/407 (71%), Positives = 323/407 (79%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G +YVFSDGIGKISAEFA RVAKKC + PSAFQIRY GYKGVVAVDP S K LSLRK
Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM K+ S+N KLDVL WSK+QPC++NRQLITLLSTLGVKD +F+KKQ+E VD+L+ ILTD
Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTD 649
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A E L +M+PGE+ N+LK +++CGYKPD EPFLSMMLQ FRA KLLELR KTRIFI
Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
GRSMMGCLDETRTL YGQV VQ S D R F++ G VVVAK
Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGDVRVL+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTP P I+DHDV IEEVEEYF NYI+NDSLGIIANAHTAFADKE KA S
Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
D C+ELA+ FS+AVDFPKTGV AEIP L+VKEYPDFM+KPDKPTYE
Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 920
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 584 bits (1505), Expect = e-164
Identities = 291/407 (71%), Positives = 320/407 (78%)
Frame = +3
Query: 54 GKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLRK 233
G +YVFSDGIGKISAEFA +VA+KC + PSAFQIRY GYKGVVAVDP S K LSLRK
Sbjct: 529 GTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 588
Query: 234 SMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILTD 413
SM K+ S+N KLDVL WSK+QPC++NRQLITLLSTLGV D +FEKKQ+E VD+L+ ILT
Sbjct: 589 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTH 648
Query: 414 PLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFIP 593
PL A E L +M+PGE+ N+LK +++CGYKPD EPFLSMMLQ FRA KLLELR KTRIFI
Sbjct: 649 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 708
Query: 594 NGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVAK 773
GRSMMGCLDETRTL YGQV VQ S D R F++ G VVVAK
Sbjct: 709 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 752
Query: 774 NPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXXX 953
NPCLHPGDVRVLQAV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD
Sbjct: 753 NPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELV 812
Query: 954 XXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAES 1133
MDYTP PT I+DHDV IEEVEEYF NYI+NDSLGIIANAHTAFADKE KA S
Sbjct: 813 PPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 872
Query: 1134 DKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTYE 1274
D C+ELA+ FS AVDFPKTGV A IP LYVKEYPDFM+KPDKPTYE
Sbjct: 873 DPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYE 919
>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
Length = 1101
Score = 583 bits (1504), Expect = e-164
Identities = 287/407 (70%), Positives = 321/407 (78%)
Frame = +3
Query: 51 NGKKYVFSDGIGKISAEFAHRVAKKCAIKSSIPSAFQIRYAGYKGVVAVDPTSIKNLSLR 230
+G Y+FSDGIGKIS++FA RVA KC I+ +PSAFQIRY GYKGVVAVDPTS LSLR
Sbjct: 524 DGTTYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKLSLR 583
Query: 231 KSMRKYASKNIKLDVLTWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLNMILT 410
KSM KY S N KLDVL+WSK+QPCF+NRQ+ITLLSTLGV+DH+FEKKQ+EAV QL+ IL
Sbjct: 584 KSMLKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLGVRDHVFEKKQREAVAQLDDILV 643
Query: 411 DPLSARETLEIMSPGEHVNVLKEMLMCGYKPDVEPFLSMMLQTFRALKLLELRNKTRIFI 590
DPL A++ L++MSPGE+ N+LKEML CGYKPD EPFLSMMLQTFR KLL+LR K RIFI
Sbjct: 644 DPLKAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARIFI 703
Query: 591 PNGRSMMGCLDETRTLNYGQVFVQVSYIGNKQFQGHVPLSIRDNTSEQRTFVVKGKVVVA 770
P R MMGC+DET TL YGQVFVQ S G+ E + V GKV VA
Sbjct: 704 PQARQMMGCMDETGTLEYGQVFVQFSGTGS------------SGLYEGTKYTVTGKVAVA 751
Query: 771 KNPCLHPGDVRVLQAVDVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDXXX 950
KNPCLHPGDVRVL+AVDVP L HMVDCVVFP+KG+RPHPNECSGSDLDGD YFV WD
Sbjct: 752 KNPCLHPGDVRVLRAVDVPELQHMVDCVVFPRKGRRPHPNECSGSDLDGDRYFVCWDPEL 811
Query: 951 XXXXXXXXMDYTPAPTTIMDHDVEIEEVEEYFVNYIINDSLGIIANAHTAFADKELRKAE 1130
M Y PAP T++DH+V IEEVEEYF NYI+NDSLGIIANAHTAFADKE A
Sbjct: 812 IPPNQESPMTYNPAPNTLLDHNVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKERDGAL 871
Query: 1131 SDKCVELAQLFSIAVDFPKTGVPAEIPPRLYVKEYPDFMDKPDKPTY 1271
S C+ELAQLFS+AVDFPKTG+PAEIPP L VKEYPDFMDKPDK TY
Sbjct: 872 SSPCLELAQLFSVAVDFPKTGIPAEIPPHLRVKEYPDFMDKPDKTTY 918