BLASTX nr result
ID: Sinomenium21_contig00005505
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00005505
(985 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera] 504 e-140
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 501 e-139
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 493 e-137
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 493 e-137
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 485 e-134
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 477 e-132
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 477 e-132
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 476 e-132
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 476 e-132
gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 469 e-130
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 469 e-129
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 468 e-129
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola... 468 e-129
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 468 e-129
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 466 e-129
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de... 466 e-129
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 464 e-128
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 464 e-128
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza] 463 e-128
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 463 e-128
>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 504 bits (1299), Expect = e-140
Identities = 249/327 (76%), Positives = 277/327 (84%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V +HEIE++PDIEI +G YVFSDGIGKIS ELA RVA KC KSS PSAFQIRYGGYK
Sbjct: 46 VAKHEIEIIPDIEIHRDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYK 105
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS + LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGV+DH+F
Sbjct: 106 GVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVF 165
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E VDQL+ IL DPL AQE LE+MS E+ N+LKEMLMCGYKPDAEPFLSMMLQTF
Sbjct: 166 EKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTF 225
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIFVP GRSMMGCLDET+TL+YG+VFVQ+S G +Q GD G S
Sbjct: 226 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYG-S 284
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GKVVVAKNPCLHPGDVR+L AV+VP LHHMVDCVVFPQKG RPHP+ECSG
Sbjct: 285 GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSG 344
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD +LIPPRQI PMDY
Sbjct: 345 SDLDGDIYFVCWDHDLIPPRQINPMDY 371
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 501 bits (1291), Expect = e-139
Identities = 247/327 (75%), Positives = 276/327 (84%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V +HEIE++PDIE +G YVFSDGIGKIS ELA RVA KC K+S PSAFQIRYGGYK
Sbjct: 502 VAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYK 561
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS + LSLRKSM KY S+N LDVL+WSK++PCFLNRQLITLLSTLGV+DH+F
Sbjct: 562 GVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVF 621
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E VDQL+ IL DPL AQE LE+MS E+ N+LKEMLMCGYKPDAEPFLSMMLQTF
Sbjct: 622 EKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTF 681
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIFVP GRSMMGCLDET+TL+YG+VFVQ+S G +Q GD G S
Sbjct: 682 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYG-S 740
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GKVVVAKNPCLHPGDVR+L AV+VP LHHMVDCVVFPQKG RPHP+ECSG
Sbjct: 741 GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSG 800
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD +LIPPRQI PMDY
Sbjct: 801 SDLDGDIYFVCWDHDLIPPRQINPMDY 827
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 493 bits (1270), Expect = e-137
Identities = 247/327 (75%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V + EIE +PDIEI YVFSDGIGKIS +LA RVA KC KSS PSAFQIRYGGYK
Sbjct: 504 VAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYK 563
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS + LSLRKSM KY S N LDVL WSK+QP FLNRQLITLLSTLGV+DH+F
Sbjct: 564 GVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVF 623
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+ VDQL+ IL DP++AQE LE+MS E+ NVLKEMLMCGYKPDAEPFLSMMLQTF
Sbjct: 624 EKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTF 683
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIFVP GRSMMGCLDET+TL+YG+VFVQ+S G +Q GD G S
Sbjct: 684 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRG-S 742
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GK+VVAKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 743 GSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSG 802
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD +LIPP+QI PMDY
Sbjct: 803 SDLDGDIYFVCWDRDLIPPQQINPMDY 829
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 493 bits (1270), Expect = e-137
Identities = 247/327 (75%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V + EIE +PDIEI YVFSDGIGKIS +LA RVA KC KSS PSAFQIRYGGYK
Sbjct: 46 VAKDEIENIPDIEIHKXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYK 105
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS + LSLRKSM KY S N LDVL WSK+QP FLNRQLITLLSTLGV+DH+F
Sbjct: 106 GVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVF 165
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+ VDQL+ IL DP++AQE LE+MS E+ NVLKEMLMCGYKPDAEPFLSMMLQTF
Sbjct: 166 EKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTF 225
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIFVP GRSMMGCLDET+TL+YG+VFVQ+S G +Q GD G S
Sbjct: 226 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRG-S 284
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F+++GK+VVAKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 285 GSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSG 344
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD +LIPP+QI PMDY
Sbjct: 345 SDLDGDIYFVCWDRDLIPPQQINPMDY 371
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 485 bits (1248), Expect = e-134
Identities = 239/327 (73%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V EIE++PD++IE KYVFSDGIGK+S E AR+VA KC +K + PSAFQIRYGGYK
Sbjct: 519 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 578
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVA DPTS K LSLR SM KY S+ KLDVL WSK+QPCFLNRQLI+LLSTLG+ D IF
Sbjct: 579 GVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 638
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E V QL+ ILTDPL AQE LE+MS E+ N+LKE+L+CGYKPDAEPFLSMMLQTF
Sbjct: 639 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 698
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIF+P GRSMMGCLDET+TL YGQVFVQ+S G +Q G+ S+ S
Sbjct: 699 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE--SSLFSS 756
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
+ ++ F+V+G VVVAKNPCLHPGDVRVL+AVNVP LHHMVDCVVFPQKG RPHPNECSG
Sbjct: 757 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 816
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ELIPP+Q PMDY
Sbjct: 817 SDLDGDIYFVCWDDELIPPQQDPPMDY 843
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 477 bits (1228), Expect = e-132
Identities = 236/327 (72%), Positives = 270/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V R+E+E++PD+ + + G KYVFSDGIGKIS + A RVAKKC K+ PSAFQIRYGGYK
Sbjct: 506 VGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYK 565
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS LSLRKSM KY S+N KLDVL SK+QPCFLNRQLITLLSTL V+DH+F
Sbjct: 566 GVVAVDPTSSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVF 625
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
KKQ+ V QLN ILTDPL A+E L++MS+ E NVLKE+LMCGYKP+ EPFLSMMLQTF
Sbjct: 626 LKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTF 685
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIF+P GR+MMGCLDET+TL+YGQVFVQ S +Q D+
Sbjct: 686 RASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICI----H 741
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
+S F+++GKVVVAKNPCLHPGDVRVL+AVNVP+LHHMVDCVVFPQKG RPHPNECSG
Sbjct: 742 SSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSG 801
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ELIPP+QI+PMDY
Sbjct: 802 SDLDGDIYFVCWDPELIPPKQIQPMDY 828
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 477 bits (1227), Expect = e-132
Identities = 237/327 (72%), Positives = 265/327 (81%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V + EI L+PDIEI +G KYVFSDGIGKIS E A++VA KC +K PSAFQIR GG+K
Sbjct: 508 VSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFK 567
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVA+DPTS LSLRKSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D F
Sbjct: 568 GVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAF 627
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E VDQLN +LTDPL AQE LE+MS E+ N+LKEML+CGYKPDAEPFLSMML+TF
Sbjct: 628 EKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETF 687
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR K RIFV KGRSMMGCLDET+TL YGQVFVQ S
Sbjct: 688 RASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------G 730
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
+ +R F+V+GKV+VAKNPCLHPGDVRVL+AVNVP+LHHMVDCVVFPQKG RPHPNECSG
Sbjct: 731 SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGD+YFV WD ELIP +QI+PMDY
Sbjct: 791 SDLDGDVYFVCWDPELIPYKQIDPMDY 817
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 476 bits (1224), Expect = e-132
Identities = 240/327 (73%), Positives = 266/327 (81%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V + EIE++ D+EI+ +G YVFSDGIGKIS + A++VA KC + PSAFQIR GG+K
Sbjct: 508 VAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFK 567
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS K LSLR SM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV DH F
Sbjct: 568 GVVAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAF 627
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQ+E VDQLN ILTDPL AQE LE+MS E+ N+LKEML+CGY+PDAEPFLSMMLQTF
Sbjct: 628 EEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTF 687
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR K+RIFV GRSMMGCLDET+TL YGQVFVQVS S
Sbjct: 688 RASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVS----------------GS 731
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
SEQR F+V+GKVVVAKNPCLHPGDVRVL AVNVP+LHHMVDCVVFPQKG RPHPNECSG
Sbjct: 732 RSEQR-FIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSG 790
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ELIP +QI PMDY
Sbjct: 791 SDLDGDIYFVCWDPELIPSKQIPPMDY 817
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 476 bits (1224), Expect = e-132
Identities = 236/327 (72%), Positives = 265/327 (81%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V + EI L+PDIEI +G KYVF DGIGKIS E A++VA KC +K PSAFQIR GG+K
Sbjct: 508 VSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFK 567
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVA+DPTS LSLRKSM KY S+N KLDVL WSK+QPCFLNRQLITLLSTLGV D+ F
Sbjct: 568 GVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAF 627
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E VDQLN +LTDPL AQE LE+MS E+ N+LKEML+CGYKPDAEPFLSMML+TF
Sbjct: 628 EKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETF 687
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR K RIFV KGRSMMGCLDET+TL YGQVFVQ S
Sbjct: 688 RASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------G 730
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
+ +R F+V+GKV+VAKNPCLHPGDVRVL+AVNVP+LHHMVDCVVFPQKG RPHPNECSG
Sbjct: 731 SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGD+YFV WD ELIP +QI+PMDY
Sbjct: 791 SDLDGDVYFVCWDPELIPYKQIDPMDY 817
>gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 885
Score = 469 bits (1207), Expect = e-130
Identities = 234/327 (71%), Positives = 262/327 (80%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHE+EL+PDI++E +GK Y FSDGIGKIS++ AR VAKKC + PSAFQIRYGGYK
Sbjct: 320 VGRHEVELIPDIQVERDGKNYCFSDGIGKISEDFAREVAKKCGLNRFTPSAFQIRYGGYK 379
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS LSLRKSMCKY SKN KLDVL WSK+QPCFLNRQLITLLSTLGV DH+F
Sbjct: 380 GVVAVDPTSSMKLSLRKSMCKYESKNNKLDVLAWSKYQPCFLNRQLITLLSTLGVSDHVF 439
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQKETV++L ILTD L AQ+ L++M E N LKEMLMCGY+P+ EPFL+MMLQT
Sbjct: 440 EKKQKETVNRLESILTDSLRAQDELKMMFPGEITNTLKEMLMCGYEPNEEPFLAMMLQTL 499
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRI VP GR+MMGCLDET TL+YGQVFVQ S Q + S
Sbjct: 500 RASKLLELRTKTRIHVPNGRAMMGCLDETGTLEYGQVFVQCS---RPQLFDNSSLVFNIS 556
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
+S TFVVKGK VVAKNPCLHPGDVRVL+A++VP LHHMVDCVVFPQKGK PH +ECSG
Sbjct: 557 SSSPDTFVVKGKTVVAKNPCLHPGDVRVLKAMDVPELHHMVDCVVFPQKGKMPHTDECSG 616
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGD YFV WD ELIP R+ + MDY
Sbjct: 617 SDLDGDTYFVCWDQELIPRRRADAMDY 643
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 469 bits (1206), Expect = e-129
Identities = 235/330 (71%), Positives = 270/330 (81%), Gaps = 3/330 (0%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V HEIE++PDIE+ G +Y+FSDGIGKIS E AR+VA KC K PSAFQIRY GYK
Sbjct: 515 VSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYK 574
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDPTS K LSLR+SM KY S+N KLDVL SK+QPCFLNRQLITLLSTLGV DH F
Sbjct: 575 GVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHF 634
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQ+E VDQL+ +LTDPL AQE LE+MS E+ N+LKEML+CGY+PDAEPFLSMMLQTF
Sbjct: 635 ERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTF 694
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIF+P GRSMMGCLDET+TL++GQVFV+ S +F+ S D
Sbjct: 695 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFS---GSRFRNLYDSS--DM 749
Query: 723 TSEQ---RTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNE 893
SE+ + +++KG VVVAKNPCLHPGD+R+L+AV+VP LHHMVDCVVFPQKG RPHPNE
Sbjct: 750 FSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNE 809
Query: 894 CSGSDLDGDIYFVSWDLELIPPRQIEPMDY 983
CSGSDLDGDIYFV WD ELIP +QI PMDY
Sbjct: 810 CSGSDLDGDIYFVCWDPELIPSQQISPMDY 839
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 468 bits (1203), Expect = e-129
Identities = 230/327 (70%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + ARRVA KC ++ + PSAFQIRYGGYK
Sbjct: 503 VLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYK 559
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGV+D I
Sbjct: 560 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDIL 619
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGY PDAEPFLSMMLQTF
Sbjct: 620 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 679
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR K+RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+++F D+ +S
Sbjct: 680 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNS 738
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 739 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 798
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++PM+Y
Sbjct: 799 SDLDGDIYFVCWDQDMIPPRQVQPMEY 825
>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 468 bits (1203), Expect = e-129
Identities = 229/327 (70%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + ARRVA KC ++ + PSAFQIRYGGYK
Sbjct: 352 VLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYK 408
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGV+D +
Sbjct: 409 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVL 468
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGY PDAEPFLSMMLQTF
Sbjct: 469 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 528
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR K+RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+++F D+ +S
Sbjct: 529 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNS 587
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 588 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 647
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++PM+Y
Sbjct: 648 SDLDGDIYFVCWDQDMIPPRQVQPMEY 674
>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 468 bits (1203), Expect = e-129
Identities = 230/327 (70%), Positives = 269/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEI+ +PD+E+ +G YVFSDGIGKIS + A RVAKKC ++ + PSAFQIRYGGYK
Sbjct: 197 VGRHEIKYIPDVEV--HGTNYVFSDGIGKISADFAHRVAKKCGLQHT-PSAFQIRYGGYK 253
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TL+STLGV+D +F
Sbjct: 254 GVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVF 313
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
++KQ E V QL+ IL D L AQE L++MS E+ N+LKEML CGY PDAEPFLSMMLQTF
Sbjct: 314 KRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTF 373
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR +TRIF+PKGRSMMGCLDE++TL+YGQVFVQ + G +QF + DS
Sbjct: 374 RASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFY-EESHHFNDS 432
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 433 GSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSG 492
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD +LIPPRQ++PMDY
Sbjct: 493 SDLDGDIYFVCWDPDLIPPRQVQPMDY 519
>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 466 bits (1198), Expect = e-129
Identities = 227/327 (69%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + ARRVA KC ++ + PSAFQIRYGGYK
Sbjct: 504 VLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYK 560
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGV+D +
Sbjct: 561 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVL 620
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGY PDAEPFLSMMLQTF
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR ++RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+++F D+ +S
Sbjct: 681 RASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNS 739
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++PM+Y
Sbjct: 800 SDLDGDIYFVCWDQDMIPPRQVQPMEY 826
>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 466 bits (1198), Expect = e-129
Identities = 227/327 (69%), Positives = 271/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + ARRVA KC ++ + PSAFQIRYGGYK
Sbjct: 470 VLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYK 526
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGV+D +
Sbjct: 527 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVL 586
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGY PDAEPFLSMMLQTF
Sbjct: 587 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 646
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR ++RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+++F D+ +S
Sbjct: 647 RASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLH-PFNNS 705
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 706 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 765
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++PM+Y
Sbjct: 766 SDLDGDIYFVCWDQDMIPPRQVQPMEY 792
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 464 bits (1194), Expect = e-128
Identities = 227/327 (69%), Positives = 270/327 (82%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + ARRVA KC ++ + PSAFQIRYGGYK
Sbjct: 504 VLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYT-PSAFQIRYGGYK 560
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S LSLRKSM KY S N KLDVL WSK+QPCFLNRQL+TLLSTLGV+D +
Sbjct: 561 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVL 620
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGY PDAEPFLSMMLQTF
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR ++RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+++F D+ +S
Sbjct: 681 RASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLH-PFNNS 739
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++ M+Y
Sbjct: 800 SDLDGDIYFVCWDQDMIPPRQVQAMEY 826
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 464 bits (1194), Expect = e-128
Identities = 231/327 (70%), Positives = 260/327 (79%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
VR EIE++PD+EI + G +YVFSDGIGKIS E ARRVAKKC + PSAFQIRYGGYK
Sbjct: 513 VRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYK 572
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVAVDP S K LSLRKSM K+ S+N KLDVL WSK+QPC++NRQLITLLSTLGVED +F
Sbjct: 573 GVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVF 632
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E VD+L+ ILTDPL A E L +M+ E+ N+LK +++CGYKPDAEPFLSMMLQ F
Sbjct: 633 EKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNF 692
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLLELR KTRIF+ GRSMMGCLDET+TL+YGQV VQ S D
Sbjct: 693 RASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS----------------DP 736
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
R F++ G VVVAKNPCLHPGDVRVL+AVNVP L+HMVDCVVFPQKG RPHPNECSG
Sbjct: 737 MRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSG 796
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ELIPPR EPMDY
Sbjct: 797 SDLDGDIYFVCWDQELIPPRTSEPMDY 823
>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
Length = 1118
Score = 463 bits (1191), Expect = e-128
Identities = 221/327 (67%), Positives = 267/327 (81%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V ++E+E +PD+E+ TNG Y+FSDGIGKIS + ARRVA KC +KS+IPSAFQIRYGGYK
Sbjct: 441 VAQNEVEKIPDVEVVTNGTTYIFSDGIGKISVDFARRVAIKCGLKSNIPSAFQIRYGGYK 500
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVVA+DPTS +SLR SM KY S + KL+VL WSK+QPCFLNRQ+ITLLSTLGV DH+F
Sbjct: 501 GVVAIDPTSSVKMSLRPSMLKYQSDDTKLNVLGWSKYQPCFLNRQIITLLSTLGVMDHVF 560
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
EKKQ+E V QLN IL DPL A E L++MS E+ +LKEML CGYKPD EPFL+MMLQTF
Sbjct: 561 EKKQREAVAQLNDILVDPLKALEALDLMSLGENTYILKEMLKCGYKPDEEPFLAMMLQTF 620
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
R+ +LL+LR K+RIF+P+ R+MMGCLDET TL+YGQVFVQ S G ++F + +
Sbjct: 621 RSSQLLDLRTKSRIFIPQARNMMGCLDETGTLEYGQVFVQFSGAGQRRFY-EESIKFDEY 679
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
TS ++VKGKV VAKNPCLHPGD+RVL+A++VP LHHMV+C+VFPQKG RPHPNECSG
Sbjct: 680 TSTDHNYIVKGKVAVAKNPCLHPGDLRVLEAIDVPALHHMVNCIVFPQKGTRPHPNECSG 739
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIY V WD +LIPP+Q +PMDY
Sbjct: 740 SDLDGDIYIVCWDPDLIPPKQFDPMDY 766
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 463 bits (1191), Expect = e-128
Identities = 227/327 (69%), Positives = 268/327 (81%)
Frame = +3
Query: 3 VRRHEIELVPDIEIETNGKKYVFSDGIGKISDELARRVAKKCAIKSSIPSAFQIRYGGYK 182
V RHEIE++PD+++ +G YVFSDGIGKIS + A RVA KC ++ + PSAFQIRYGGYK
Sbjct: 504 VLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQYT-PSAFQIRYGGYK 560
Query: 183 GVVAVDPTSMKTLSLRKSMCKYISKNRKLDVLTWSKFQPCFLNRQLITLLSTLGVEDHIF 362
GVV VDP S LSLRKSM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGV+D +
Sbjct: 561 GVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVL 620
Query: 363 EKKQKETVDQLNIILTDPLSAQETLEIMSSSEHVNVLKEMLMCGYKPDAEPFLSMMLQTF 542
E+KQKE VDQL+ IL D L AQE LE+MS E+ N+LK ML CGYKPDAEPFLSMMLQTF
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTF 680
Query: 543 RALKLLELRKKTRIFVPKGRSMMGCLDETKTLKYGQVFVQVSCIGNKQFQGDVPCSIGDS 722
RA KLL+LR ++RIF+P GR+MMGCLDE++TL+YGQVFVQ + G+ +F D+ +S
Sbjct: 681 RASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLH-PFNNS 739
Query: 723 TSEQRTFVVKGKVVVAKNPCLHPGDVRVLQAVNVPNLHHMVDCVVFPQKGKRPHPNECSG 902
S F++KG VVVAKNPCLHPGD+RVL+AVNV LHHMVDCVVFPQKGKRPHPNECSG
Sbjct: 740 RSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 903 SDLDGDIYFVSWDLELIPPRQIEPMDY 983
SDLDGDIYFV WD ++IPPRQ++PM+Y
Sbjct: 800 SDLDGDIYFVCWDQDMIPPRQVQPMEY 826