BLASTX nr result
ID: Sinomenium21_contig00004306
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00004306
(455 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 64 2e-08
gb|ABK26380.1| unknown [Picea sitchensis] 64 3e-08
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g... 63 5e-08
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi... 63 5e-08
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 62 6e-08
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 61 2e-07
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 61 2e-07
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I... 61 2e-07
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 61 2e-07
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 60 4e-07
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S... 60 4e-07
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun... 59 9e-07
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ... 58 1e-06
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8... 58 1e-06
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I... 58 2e-06
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 56 5e-06
dbj|BAJ90930.1| predicted protein [Hordeum vulgare subsp. vulgare] 56 5e-06
ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Caps... 56 6e-06
gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RP... 56 6e-06
ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8... 56 6e-06
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLMMLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 116 SFGGLLMMLKGDPSSAANFELDQRLFLLMRKV 147
>gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGDPSNA NFELDQRLFLLMRKV
Sbjct: 114 SFGGLLMLLKGDPSNAGNFELDQRLFLLMRKV 145
>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase
[Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 148
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLL+MLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 117 SFGGLLVMLKGDPSSAANFELDQRLFLLMRKV 148
>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLL+MLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 184 SFGGLLVMLKGDPSSAANFELDQRLFLLMRKV 215
>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Oryza brachyantha]
gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X3 [Oryza brachyantha]
gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X4
[Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X5 [Oryza brachyantha]
Length = 146
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLMMLKGDPS AANFELDQRLFLL+RKV
Sbjct: 115 SFGGLLMMLKGDPSTAANFELDQRLFLLIRKV 146
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLMMLKGDPS+AA+FELDQRLFLL+RKV
Sbjct: 365 SFGGLLMMLKGDPSSAASFELDQRLFLLIRKV 396
>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGDPS+AAN ELDQRLFLLMRKV
Sbjct: 115 SFGGLLMLLKGDPSSAANLELDQRLFLLMRKV 146
>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 144
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGDPS+AAN ELDQRLFLLMRKV
Sbjct: 113 SFGGLLMLLKGDPSSAANLELDQRLFLLMRKV 144
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLMMLKGDPS+AA+FELDQRLFLL+RKV
Sbjct: 160 SFGGLLMMLKGDPSSAASFELDQRLFLLIRKV 191
>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein
SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+L+GDPS AA+FELDQRLFLLMRKV
Sbjct: 114 SFGGLLMLLRGDPSTAASFELDQRLFLLMRKV 145
>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein
SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+L+GDPS AA+FELDQRLFLLMRKV
Sbjct: 114 SFGGLLMLLRGDPSTAASFELDQRLFLLMRKV 145
>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
[Aegilops tauschii]
Length = 220
Score = 58.5 bits (140), Expect = 9e-07
Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 2/47 (4%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV--*DYISSGWPPHQS 321
SFGGLLM+LKGDPS+AAN ELDQ+LFLL+RKV + + +PP S
Sbjct: 117 SFGGLLMLLKGDPSSAANLELDQKLFLLIRKVCKDEKVGMPFPPRPS 163
>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
Length = 146
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+L+GDPS AA+FELDQRLFLL+RKV
Sbjct: 115 SFGGLLMLLRGDPSTAASFELDQRLFLLIRKV 146
>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 1 [Zea mays]
gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 2 [Zea mays]
gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 3 [Zea mays]
gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 4 [Zea mays]
Length = 146
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+L+GDPS AA+FELDQRLFLL+RKV
Sbjct: 115 SFGGLLMLLRGDPSTAASFELDQRLFLLIRKV 146
>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
[Cucumis sativus]
Length = 144
Score = 57.8 bits (138), Expect = 2e-06
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLMMLKGDPS+ + FELDQRLFLL+RKV
Sbjct: 113 SFGGLLMMLKGDPSHCSKFELDQRLFLLIRKV 144
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
S+GGLLMMLKGDPS ++FELDQRLFLLMRK+
Sbjct: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
>dbj|BAJ90930.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 81
Score = 56.2 bits (134), Expect = 5e-06
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGD S+AAN ELDQRLFLL+RKV
Sbjct: 50 SFGGLLMLLKGDASSAANLELDQRLFLLIRKV 81
>ref|XP_006305757.1| hypothetical protein CARUB_v10010575mg [Capsella rubella]
gi|482574468|gb|EOA38655.1| hypothetical protein
CARUB_v10010575mg [Capsella rubella]
Length = 146
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGDP++ ++FELDQRLFLLMRK+
Sbjct: 115 SFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146
>gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RPB8, partial [Manihot
esculenta]
Length = 110
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
S+GGLLMMLKGDPS+ ++FELDQRLFLL+RK+
Sbjct: 79 SYGGLLMMLKGDPSHVSHFELDQRLFLLIRKL 110
>ref|NP_175827.1| DNA-directed RNA polymerases II and V subunit 8A [Arabidopsis
thaliana] gi|75100070|sp|O81097.1|RPB8A_ARATH RecName:
Full=DNA-directed RNA polymerases II and V subunit 8A;
AltName: Full=RNA polymerase I, II and III 16.5 kDa
subunit; Short=AtRPABC16.5
gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
and III 16.5 kDa subunit [Arabidopsis thaliana]
gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
16.5 kDa subunit [Arabidopsis thaliana]
gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
putative [Arabidopsis thaliana]
gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
II and III 16.5 kDa subunit [Arabidopsis thaliana]
gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
[Arabidopsis thaliana]
Length = 146
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = -1
Query: 455 SFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 360
SFGGLLM+LKGDP++ ++FELDQRLFLLMRK+
Sbjct: 115 SFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146