BLASTX nr result
ID: Sinomenium21_contig00003961
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00003961
(478 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citr... 77 2e-12
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi... 75 7e-12
ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloropl... 75 1e-11
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab... 74 2e-11
ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutr... 74 2e-11
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl... 74 3e-11
ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Caps... 72 8e-11
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c... 69 9e-10
ref|XP_002302374.1| plastid-specific ribosomal family protein [P... 69 9e-10
ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast prec... 68 2e-09
ref|XP_007199117.1| hypothetical protein PRUPE_ppa020853mg [Prun... 67 3e-09
ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloropl... 67 3e-09
ref|XP_006356805.1| PREDICTED: 50S ribosomal protein 6, chloropl... 66 4e-09
ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloropl... 66 6e-09
gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis] 65 8e-09
ref|XP_003526512.1| PREDICTED: 50S ribosomal protein 6, chloropl... 65 1e-08
ref|XP_007137271.1| hypothetical protein PHAVU_009G113500g [Phas... 65 1e-08
ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [S... 65 1e-08
ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea ma... 65 1e-08
ref|NP_001158969.1| plastid-specific ribosomal protein 6 [Zea ma... 65 1e-08
>ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citrus clementina]
gi|557535820|gb|ESR46938.1| hypothetical protein
CICLE_v10002778mg [Citrus clementina]
Length = 149
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Frame = +1
Query: 22 RAVEQSRKRGEREREMSVSAIFGTRVAVAKHNTSPSLGVVRRV-VG-VIECSSRPQKKAT 195
R+ +QS G R R MS+S+ FG+++ V + +S LGV + VG VIE SSRPQKKAT
Sbjct: 27 RSADQSE--GNR-RGMSISSFFGSQIVVVPNLSSKKLGVEGKCNVGLVIENSSRPQKKAT 83
Query: 196 AHHMKTRPKKTAPWDVKRR 252
AHHMKTRP+KT PWDV R+
Sbjct: 84 AHHMKTRPRKTQPWDVNRK 102
>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
ribosomal protein 6, chloroplastic; AltName: Full=CL25;
AltName: Full=Plastid-specific 50S ribosomal protein 6;
Short=PSRP-6; Flags: Precursor
gi|10177888|dbj|BAB11220.1| unnamed protein product
[Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
AT5g17870/MPI7_10 [Arabidopsis thaliana]
gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
[Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
plastid-specific ribosomal protein 6 precursor
(Psrp-6)-like [Arabidopsis thaliana]
gi|332005097|gb|AED92480.1| plastid-specific 50S
ribosomal protein 6 [Arabidopsis thaliana]
Length = 106
Score = 75.5 bits (184), Expect = 7e-12
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Frame = +1
Query: 67 MSVSAIFGTRVA------VAKHNTSPSLGVVRRVVGVIECSSRPQKKATAHHMKTRPKKT 228
MSVSAIFGT + V + P LG + VIECSSRPQKK+TAHH KTRPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60
Query: 229 APWDVKRR 252
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Citrus
sinensis]
Length = 111
Score = 74.7 bits (182), Expect = 1e-11
Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPSLGVVRRV-VG-VIECSSRPQKKATAHHMKTRPKKTAPWD 240
MS+S+ FG+++ V + +S LG+ + VG VIE SSRPQKKATAHHMKTRP+KT PWD
Sbjct: 1 MSISSFFGSQIVVVPNLSSKKLGMEEKCNVGLVIENSSRPQKKATAHHMKTRPRKTQPWD 60
Query: 241 VKRR 252
V R+
Sbjct: 61 VNRK 64
>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
Length = 108
Score = 74.3 bits (181), Expect = 2e-11
Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Frame = +1
Query: 67 MSVSAIFGTRVA------VAKHNTSPSLGVVRRVVGVIECSSRPQKKATAHHMKTRPKKT 228
MSVSAIFGT + V + P+LG + VIECSSRPQKK+TAHH K+RPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60
Query: 229 APWDVKRR 252
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutrema salsugineum]
gi|557101420|gb|ESQ41783.1| hypothetical protein
EUTSA_v10015071mg [Eutrema salsugineum]
Length = 109
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/68 (57%), Positives = 45/68 (66%), Gaps = 6/68 (8%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTS------PSLGVVRRVVGVIECSSRPQKKATAHHMKTRPKKT 228
MSVSAIFGT + + S P G + VIECSSRPQKK+TAHH KTRPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPSLRQFQVPKSGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60
Query: 229 APWDVKRR 252
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
Length = 108
Score = 73.6 bits (179), Expect = 3e-11
Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPSLGVVRRV------VGVIECSSRPQKKATAHHMKTRPKKT 228
MS+SAIFG V + +T+ S G + VIECSSRPQKK T+HHMKTRP+KT
Sbjct: 1 MSISAIFGAAVP-NRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKT 59
Query: 229 APWDVKRR 252
PWD+KRR
Sbjct: 60 QPWDIKRR 67
>ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Capsella rubella]
gi|482557644|gb|EOA21836.1| hypothetical protein
CARUB_v10002303mg [Capsella rubella]
Length = 109
Score = 72.0 bits (175), Expect = 8e-11
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Frame = +1
Query: 67 MSVSAIFGTRVA-------VAKHNTSPSLGVVRRVVGVIECSSRPQKKATAHHMKTRPKK 225
MSVSAIFGT + V + P LG + VIECSSRPQKK+TAHH K+RPKK
Sbjct: 1 MSVSAIFGTGIVTVAASSPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKK 60
Query: 226 TAPWDVKRR 252
+ PWD+KR+
Sbjct: 61 SQPWDIKRK 69
>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
protein 6; Short=PSRP-6; Flags: Precursor
gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
ribosomal protein 6 precursor [Spinacia oleracea]
Length = 116
Score = 68.6 bits (166), Expect = 9e-10
Identities = 41/74 (55%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPSLGVVRRV-------------VGVIECSSRPQKKATAHHM 207
MSVSAIFG RV S R V V IECSSRPQKK TAHHM
Sbjct: 1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60
Query: 208 KTRPKKTAPWDVKR 249
KTRPKKTA WD+KR
Sbjct: 61 KTRPKKTARWDIKR 74
>ref|XP_002302374.1| plastid-specific ribosomal family protein [Populus trichocarpa]
gi|118486925|gb|ABK95296.1| unknown [Populus
trichocarpa] gi|222844100|gb|EEE81647.1|
plastid-specific ribosomal family protein [Populus
trichocarpa]
Length = 123
Score = 68.6 bits (166), Expect = 9e-10
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 14/76 (18%)
Frame = +1
Query: 67 MSVSAIFGTRVAVA-KHNTSPSLGVVR---RVVGV----------IECSSRPQKKATAHH 204
MSVS+IFG+ +A K +T+PS V + V + IECSSRPQKKATAHH
Sbjct: 1 MSVSSIFGSPFLLAPKPSTTPSFKPVNGEFKTVPIGTGFGHGGMSIECSSRPQKKATAHH 60
Query: 205 MKTRPKKTAPWDVKRR 252
KTRP+K+ PWD+KR+
Sbjct: 61 RKTRPRKSQPWDIKRK 76
>ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis] gi|223550719|gb|EEF52205.1| 50S
ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis]
Length = 126
Score = 67.8 bits (164), Expect = 2e-09
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPSLGVV-----RRVVG--------VIECSSRPQKKATAHHM 207
MS+S+IFG+ V + + L V + G VIECSSRP+KKATAHHM
Sbjct: 1 MSISSIFGSPVVLLSKASLKQLNVEVKSAPKTATGNGWYSGGLVIECSSRPKKKATAHHM 60
Query: 208 KTRPKKTAPWDVKRR 252
KTRPKK+ PWD++R+
Sbjct: 61 KTRPKKSQPWDIRRK 75
>ref|XP_007199117.1| hypothetical protein PRUPE_ppa020853mg [Prunus persica]
gi|462394517|gb|EMJ00316.1| hypothetical protein
PRUPE_ppa020853mg [Prunus persica]
Length = 74
Score = 67.0 bits (162), Expect = 3e-09
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 118 TSPSLGVVRRVVGV-IECSSRPQKKATAHHMKTRPKKTAPWDVKRR 252
TSP G V G+ IECSSRPQKKATAHH KTRP+KT PWDVKR+
Sbjct: 19 TSPLRGSVGGGTGLMIECSSRPQKKATAHHRKTRPRKTQPWDVKRK 64
>ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Solanum
lycopersicum]
Length = 111
Score = 67.0 bits (162), Expect = 3e-09
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 12/73 (16%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPSL----GVVRRVVG--------VIECSSRPQKKATAHHMK 210
MS SAIFG ++AV +++ S G R+ VIECSSRPQKKATAHH K
Sbjct: 1 MSASAIFGLQMAVLPRSSTVSATGFTGGATRLASAPTSIGGLVIECSSRPQKKATAHHKK 60
Query: 211 TRPKKTAPWDVKR 249
TRP+KT WD++R
Sbjct: 61 TRPRKTQAWDIRR 73
>ref|XP_006356805.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Solanum
tuberosum]
Length = 111
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 12/73 (16%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSPS----------LGVVRRVVG--VIECSSRPQKKATAHHMK 210
MS SAIFG ++ V +++ S L VG VIECSSRPQKKATAHH K
Sbjct: 1 MSASAIFGLQMVVLPRSSTVSTTGFTGGATRLAAAPTSVGGLVIECSSRPQKKATAHHKK 60
Query: 211 TRPKKTAPWDVKR 249
TRP+KT WD++R
Sbjct: 61 TRPRKTQAWDIRR 73
>ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Setaria
italica]
Length = 117
Score = 65.9 bits (159), Expect = 6e-09
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1
Query: 124 PSLGVVRRVVGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 252
PSL R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 30 PSLLGGGRAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 72
>gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis]
Length = 115
Score = 65.5 bits (158), Expect = 8e-09
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 11/73 (15%)
Frame = +1
Query: 67 MSVSAIFGTRVAVAKHNTSP-SLGVVRRVV----------GVIECSSRPQKKATAHHMKT 213
MS +A FG ++ + ++P S R+ VIECSSRP KKATAHHMKT
Sbjct: 1 MSTAAFFGAQIVAVRIPSAPASFAGARKSAPWNGGGGGGPAVIECSSRPTKKATAHHMKT 60
Query: 214 RPKKTAPWDVKRR 252
RPKKT WD++R+
Sbjct: 61 RPKKTQAWDIRRK 73
>ref|XP_003526512.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Glycine
max]
Length = 98
Score = 65.1 bits (157), Expect = 1e-08
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 VSAIFGTRVAVAKHNTSPSLGVVRRVVG--VIECSSRPQKKATAHHMKTRPKKTAPWDVK 246
VS++FG V +A S ++G+ RR G I CSSRPQKKATAHHMKTRP+KT WD
Sbjct: 4 VSSMFGCGVVMA---ASQAMGIGRRSDGGLTIVCSSRPQKKATAHHMKTRPRKTQAWDRN 60
Query: 247 RR 252
R+
Sbjct: 61 RK 62
>ref|XP_007137271.1| hypothetical protein PHAVU_009G113500g [Phaseolus vulgaris]
gi|561010358|gb|ESW09265.1| hypothetical protein
PHAVU_009G113500g [Phaseolus vulgaris]
Length = 96
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 SVSAIFGTRVAVAKHNTSPSLGVVRRVVG--VIECSSRPQKKATAHHMKTRPKKTAPWDV 243
S+S++FG +A SLG+ +R G I CSSRP+KKATAHHMKTRP+K+ PWD+
Sbjct: 3 SLSSMFGCGAVMAPPQ---SLGIGKRSDGGLTIVCSSRPKKKATAHHMKTRPRKSQPWDI 59
Query: 244 KRR 252
R+
Sbjct: 60 NRK 62
>ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [Sorghum bicolor]
gi|241928066|gb|EES01211.1| hypothetical protein
SORBIDRAFT_03g030290 [Sorghum bicolor]
Length = 123
Score = 64.7 bits (156), Expect = 1e-08
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +1
Query: 145 RVVGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 252
R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 40 RAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75
>ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea mays]
gi|195642604|gb|ACG40770.1| plastid-specific ribosomal
protein 6 precursor [Zea mays]
Length = 123
Score = 64.7 bits (156), Expect = 1e-08
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +1
Query: 145 RVVGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 252
R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 42 RAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77
>ref|NP_001158969.1| plastid-specific ribosomal protein 6 [Zea mays]
gi|195615274|gb|ACG29467.1| plastid-specific ribosomal
protein 6 precursor [Zea mays]
gi|413925596|gb|AFW65528.1| plastid-specific ribosomal
protein 6 [Zea mays]
Length = 121
Score = 64.7 bits (156), Expect = 1e-08
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +1
Query: 145 RVVGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 252
R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 40 RAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75