BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00003636
         (2063 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              576   e-161
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   573   e-160
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   546   e-152
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   545   e-152
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   542   e-151
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   539   e-150
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   527   e-147
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   525   e-146
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   523   e-145
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   520   e-144
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   519   e-144
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   511   e-142
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   496   e-137
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   488   e-135
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   486   e-134
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   486   e-134
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   485   e-134
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-134
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     475   e-131
ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phas...   472   e-130

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  576 bits (1484), Expect = e-161
 Identities = 316/567 (55%), Positives = 390/567 (68%), Gaps = 6/567 (1%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQ 346
            ME+G  +L S   FP +   RN +  SVLMLH+Q                FP S LLQEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIAR-KFPTSVLLQEQ 58

Query: 347  HVEFRPL---LSDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLYASDLCSL 517
              E+RP    L D++T Q TL+ R+     S +E+ S + + Y+ +FE+QLL    L   
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYS 118

Query: 518  FPSLCTGEK-PFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
             PS  TGEK PFSS+I++S   D+++  DVKPCD                   E + L G
Sbjct: 119  LPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLG 178

Query: 695  ADSNVFLTGSELTSL-AIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKAD 871
            AD    L  S   SL AI +P                        PK  VHE    R+A+
Sbjct: 179  AD----LEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAVHENHGSRRAE 234

Query: 872  IQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNRE 1051
            +QRKIN G+D  DPLRLFL G ETR+LL+AKEE EL VQI+ L RLEEVK RLQS   RE
Sbjct: 235  VQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKRE 294

Query: 1052 PTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEG 1231
            PT+VEWAEA+G+SC +LQS LH G+RSR+K+  AN R+VVH+AKQYQGRGLNLQDL+QEG
Sbjct: 295  PTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEG 354

Query: 1232 SMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKN 1411
            SMGLM S+EKFKP  GCRF++YAYWWIRQ++RKAIFQ+SRTIRLPEN+YSLL +VK AK 
Sbjct: 355  SMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKR 414

Query: 1412 LYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEV 1588
            L+IQEGHH PT EE+A RVGI++EKL+ LL  TRMPLSMQQPVW DQ+TTFQE+TAD+ +
Sbjct: 415  LFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGI 474

Query: 1589 EIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVR 1768
            EIP++ V K+LMR+HVRNLL +L PKERRIIRLRFGI DG P++LS+IG VFG +KERVR
Sbjct: 475  EIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVR 534

Query: 1769 QLESRALDKLRKCLSTEGLGAYAELLI 1849
            QLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 535  QLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  573 bits (1476), Expect = e-160
 Identities = 316/577 (54%), Positives = 390/577 (67%), Gaps = 16/577 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRN----------FTPLSVLMLHEQXXXXXXXXXXXXXXWN 316
            ME+G  +L S   FP +   RN          +  L VLMLH+Q                
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIAR-K 59

Query: 317  FPASALLQEQHVEFRPL---LSDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQ 487
            FP S LLQEQ  E+RP    L D++T Q TL+ R+     S +E+ S + + Y+ +FE+Q
Sbjct: 60   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQ 119

Query: 488  LLYASDLCSLFPSLCTGEK-PFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXX 664
            LL    L    PS  TGEK PFSS+I++S   D+++  DVKPCD                
Sbjct: 120  LLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAV 179

Query: 665  XXXEESNLSGADSNVFLTGSELTSL-AIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIV 841
               E + L GAD    L  S   SL AI +P                        PK  V
Sbjct: 180  SLYENAKLLGAD----LEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV 235

Query: 842  HEAPSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVK 1021
            HE    R+A++QRKIN G+D  DPLRLFL G ETR+LL+AKEE EL VQI+ L RLEEVK
Sbjct: 236  HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295

Query: 1022 VRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRG 1201
             RLQS   REPT+VEWAEA+G+SC +LQS LH G+RSR+K+  AN R+VVH+AKQYQGRG
Sbjct: 296  KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355

Query: 1202 LNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYS 1381
            LNLQDL+QEGSMGLM S+EKFKP  GCRF++YAYWWIRQ++RKAIFQ+SRTIRLPEN+YS
Sbjct: 356  LNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYS 415

Query: 1382 LLRQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTT 1558
            LL +VK AK L+IQEGHH PT EE+A RVGI++EKL+ LL  TRMPLSMQQPVW DQ+TT
Sbjct: 416  LLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTT 475

Query: 1559 FQEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGS 1738
            FQE+TAD+ +EIP++ V K+LMR+HVRNLL +L PKERRIIRLRFGI DG P++LS+IG 
Sbjct: 476  FQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGL 535

Query: 1739 VFGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            VFG +KERVRQLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 536  VFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  546 bits (1407), Expect = e-152
 Identities = 305/574 (53%), Positives = 386/574 (67%), Gaps = 13/574 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNF--------TPLSVLMLHEQXXXXXXXXXXXXXXWNFP 322
            ME+GR LL SP  FP + ++++         +  SVLM +EQ               +FP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 323  ASALLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQL 490
             S LLQEQ  E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 491  LYASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXX 670
            L+  DL +L P +  GE P  S  +QS + D +   D +P D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 671  XEESNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEA 850
             E   L+GA+     T   LTS ++  P+E+                    KPK   HE 
Sbjct: 181  AENPKLNGAE----FTDISLTS-SLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHET 235

Query: 851  PSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRL 1030
             + RKA +++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +L
Sbjct: 236  YNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 1031 QSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNL 1210
            QSQF REPTL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ L
Sbjct: 296  QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1211 QDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1390
             DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1391 QVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQE 1567
            +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1568 ITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFG 1747
            ITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1748 ITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            ++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  545 bits (1404), Expect = e-152
 Identities = 305/575 (53%), Positives = 385/575 (66%), Gaps = 14/575 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLS---------VLMLHEQXXXXXXXXXXXXXXWNF 319
            ME+GR LL SP  FP + ++++    S         VLM +EQ               +F
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 320  PASALLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQ 487
            P S LLQEQ  E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 488  LLYASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXX 667
             L+  DL +L P +  GE P  S  +QS + D +   D +P D                 
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 668  XXEESNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHE 847
              E   L+GA+     T   LTS ++  P+E+                    KPK   HE
Sbjct: 181  LAENPKLNGAE----FTDISLTS-SLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 848  APSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVR 1027
              + RKA +++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +
Sbjct: 236  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 295

Query: 1028 LQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLN 1207
            LQSQF REPTL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ 
Sbjct: 296  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 355

Query: 1208 LQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLL 1387
            L DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL
Sbjct: 356  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 415

Query: 1388 RQVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQ 1564
             +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQ
Sbjct: 416  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 475

Query: 1565 EITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVF 1744
            EITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++F
Sbjct: 476  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 535

Query: 1745 GITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            G++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 536  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  542 bits (1397), Expect = e-151
 Identities = 300/566 (53%), Positives = 379/566 (66%), Gaps = 5/566 (0%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQ 346
            ME+GR LL SP  FP + ++++    S                      +FP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 347  HVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQLLYASDLCS 514
              E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 515  LFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
            L P +  GE P  S  +QS + D +   D +P D                   E   L+G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 695  ADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADI 874
            A+     T   LTS ++  P+E+                    KPK   HE  + RKA +
Sbjct: 181  AE----FTDISLTS-SLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 875  QRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREP 1054
            ++K++ GFD++DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +LQSQF REP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1055 TLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGS 1234
            TL+EWA+AIG+SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ L DL+QEGS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1235 MGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNL 1414
            MGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  AK L
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1415 YIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVE 1591
            YIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQEITAD+ VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1592 IPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQ 1771
            IP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++FG++KERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1772 LESRALDKLRKCLSTEGLGAYAELLI 1849
            LESRAL +L++ L  +    YA+LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  539 bits (1389), Expect = e-150
 Identities = 309/574 (53%), Positives = 385/574 (67%), Gaps = 13/574 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTP-----LSVLMLHEQXXXXXXXXXXXXXXWNFPASA 331
            ME+GR+ L S S FP    LR+  P      SVLMLHEQ               +FP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 332  LLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGASCEEKKSSELDSY---VKHFEQQLL 493
            LLQEQ  EF+PLL    +DKT +  LD  +   GAS  E    ++D +   V   + QLL
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHE--DLDIDDFYPLVNSSKPQLL 118

Query: 494  YASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXX 673
               D+  +F SL TG KP +   L+S     +   DV+PC+                   
Sbjct: 119  N-HDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLA 177

Query: 674  EESNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXX-PKPKAIVHEA 850
            E+S   GAD +  L  + L +  +E   EK +                  PK K I HE+
Sbjct: 178  EDSQSMGADFDD-LGYTSLANWIVEE--EKTVRSTRILERRRKRIKTRKVPKSKVIGHES 234

Query: 851  PSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRL 1030
             S   +D+++KI+ GF+ +DPLRLFL G ETRQLL+AKEE EL  +++ L +LEEVK RL
Sbjct: 235  NSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 294

Query: 1031 QSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNL 1210
            Q+QF REPTL+EWAEA+G+SC IL+S L  G  SREK+  AN R+VVH+AKQYQGRGL L
Sbjct: 295  QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 354

Query: 1211 QDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1390
            QDLMQEGSMGLMKS+EKFKPQ GCRF+TYAYWWIRQ++RKAIFQ+SRTIRLPENVYSLL 
Sbjct: 355  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 414

Query: 1391 QVKNAKNLYIQEG-HHPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQE 1567
            +V  AK   IQEG H+P  EELA RVGI+VEKLE LL++TRMPLSMQQPVW DQ+TTFQE
Sbjct: 415  KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 474

Query: 1568 ITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFG 1747
            +TAD+ VEIP++ V K+LMR+HVR+LLSIL  +ER IIRLR+GIEDG+ +SLS+IG +FG
Sbjct: 475  VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFG 534

Query: 1748 ITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            ++KERVRQLESRA  KLR+ L ++GLGAY  LL+
Sbjct: 535  LSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  527 bits (1357), Expect = e-147
 Identities = 299/574 (52%), Positives = 378/574 (65%), Gaps = 13/574 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNF--------TPLSVLMLHEQXXXXXXXXXXXXXXWNFP 322
            ME+GR LL SP  FP + ++++         +  SVLM +EQ               +FP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 323  ASALLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQL 490
             S LLQEQ  E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 491  LYASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXX 670
            L+  DL +L P +  GE P  S  +QS + D +   D +P D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 671  XEESNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEA 850
             E   L+GA+     T   LTS ++  P+E+                    KPK   HE 
Sbjct: 181  AENPKLNGAE----FTDISLTS-SLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHET 235

Query: 851  PSLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRL 1030
             + RKA +++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +L
Sbjct: 236  YNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 1031 QSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNL 1210
            QSQF REPTL+       +SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ L
Sbjct: 296  QSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1211 QDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1390
             DL+QEGSMGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1391 QVKNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQE 1567
            +V  AK LYIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1568 ITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFG 1747
            ITAD+ VEIP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1748 ITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            ++KERVRQLESRAL +L++ L  +    YA+LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  525 bits (1353), Expect = e-146
 Identities = 291/572 (50%), Positives = 385/572 (67%), Gaps = 11/572 (1%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNF----TPLSVLMLHEQXXXXXXXXXXXXXXWNFPASAL 334
            ME+ R LL  P  F  + QL++     +  SVLM HEQ               +FP S L
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 335  LQEQHVEFRPL-----LSDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLYA 499
            LQEQ  ++RPL       +DK      D ++  NGAS  E+ +S     +  FE++LL  
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLG-FEKKLLQW 119

Query: 500  SDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEE 679
             DL  L   L + E P S++ +QS A D   + DV+P +                   E+
Sbjct: 120  PDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSED 179

Query: 680  SNLSGADSNVFLTGSELTSLAIEAPIEKE-IXXXXXXXXXXXXXXXXXPKPKAIVHEAPS 856
              L   DS   L+ S  ++ +   P+EKE +                  +PK  + E  S
Sbjct: 180  LKLDLDDS---LSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETYS 236

Query: 857  LRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQS 1036
             R+ D++RK++ GFD +DPLRLFL G ET+QLL+AKEE EL  Q++ L RLE+VK +LQS
Sbjct: 237  SRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQS 296

Query: 1037 QFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQD 1216
            QF REPTLVEWAEAIG+ C  LQ+ LH G+ SR+K+  AN R+VVH+AKQYQ RGL+LQD
Sbjct: 297  QFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQD 356

Query: 1217 LMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQV 1396
            L+QEGSMGLMKS+E+FKPQVGCRF+TYAYWWIRQ+IRK+I Q+SRT+RLPENV++LL +V
Sbjct: 357  LLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKV 416

Query: 1397 KNAKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEIT 1573
             +AK  YI+EG+H P+ EELA RVGI+VEKL+ LLF+TRMPLSMQQ VW+DQ+ TFQE+T
Sbjct: 417  LDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVT 476

Query: 1574 ADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGIT 1753
             D+ +EIP++ V K+LMR+HVRNLLS+L P+ER II+LRFGIE+ +  SLS+IG++FG++
Sbjct: 477  PDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGLS 536

Query: 1754 KERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            KERVRQLESRAL KL++CL+  GLGAY +LL+
Sbjct: 537  KERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  523 bits (1347), Expect = e-145
 Identities = 294/566 (51%), Positives = 371/566 (65%), Gaps = 5/566 (0%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQ 346
            ME+GR LL SP  FP + ++++    S                      +FP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 347  HVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQLLYASDLCS 514
              E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 515  LFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
            L P +  GE P  S  +QS + D +   D +P D                   E   L+G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 695  ADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADI 874
            A+     T   LTS ++  P+E+                    KPK   HE  + RKA +
Sbjct: 181  AE----FTDISLTS-SLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 875  QRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREP 1054
            ++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +LQSQF REP
Sbjct: 236  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1055 TLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGS 1234
            TL+       +SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ L DL+QEGS
Sbjct: 296  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1235 MGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNL 1414
            MGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  AK L
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1415 YIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVE 1591
            YIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQEITAD+ VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1592 IPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQ 1771
            IP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++FG++KERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1772 LESRALDKLRKCLSTEGLGAYAELLI 1849
            LESRAL +L++ L  +    YA+LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  520 bits (1338), Expect = e-144
 Identities = 294/566 (51%), Positives = 371/566 (65%), Gaps = 5/566 (0%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQ 346
            ME+GR LL SP  FP + ++++    S                      +FP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVASVPTSSVAR---HFPTSVLLQEQ 57

Query: 347  HVEFRPLL---SDDKTLQTTLDWRKTNNGAS-CEEKKSSELDSYVKHFEQQLLYASDLCS 514
              E+RPLL    +DKT Q T D R     A   EEK S +LD  V+  E Q L+  DL +
Sbjct: 58   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 117

Query: 515  LFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
            L P +  GE P  S  +QS + D +   D +P D                   E   L+G
Sbjct: 118  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 177

Query: 695  ADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADI 874
            A+     T   LTS ++  P+E+                    KPK   HE  + RKA +
Sbjct: 178  AE----FTDISLTS-SLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 232

Query: 875  QRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREP 1054
            ++K++ GFD +DPLRLFL G ETR+LL+A EE EL  QI+ L RLE+ K +LQSQF REP
Sbjct: 233  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 292

Query: 1055 TLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGS 1234
            TL+       +SC  L+S LH G+ SREK+  AN RLVVHVAKQYQGRG+ L DL+QEGS
Sbjct: 293  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 352

Query: 1235 MGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNL 1414
            MGLMKS+EKFKPQ GCRF++YAYWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  AK L
Sbjct: 353  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 412

Query: 1415 YIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVE 1591
            YIQEG+H P  E+LA RVGI+VEKLE L+F TRMPLSMQQPVW DQ+TTFQEITAD+ VE
Sbjct: 413  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472

Query: 1592 IPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQ 1771
            IP++ V K+LMR+HVRNLL++L PKER I+RLRFGIEDG+PKSLS++G++FG++KERVRQ
Sbjct: 473  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532

Query: 1772 LESRALDKLRKCLSTEGLGAYAELLI 1849
            LESRAL +L++ L  +    YA+LLI
Sbjct: 533  LESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  519 bits (1337), Expect = e-144
 Identities = 297/565 (52%), Positives = 367/565 (64%), Gaps = 5/565 (0%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQ 346
            ME+GR LL S   FP +  L+N    SVL+L EQ               +FP S LLQEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQ 60

Query: 347  HVEFRPL---LSDDKTLQTTLDWRKTNNGASCEE-KKSSELDSYVKHFEQQLLYASDLCS 514
              EFRPL     +D+  Q TLD RKT  G S  E K S ELD  V++FE QL +     +
Sbjct: 61   RDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWN 120

Query: 515  LFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
            L                       D L DV+P +                          
Sbjct: 121  L----------------------TDKLIDVEPTNVINLAKRALSASKHAAFL-------- 150

Query: 695  ADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADI 874
            AD+N  L     TS +    +E+                   PK K ++ E    + AD+
Sbjct: 151  ADNNTDLDNLASTSSS-SFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADV 209

Query: 875  QRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREP 1054
            Q++++ GFD +DPLRLFL G ET+QLL+AKEE EL  QI+ L  LE VK RL+SQF REP
Sbjct: 210  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 269

Query: 1055 TLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGS 1234
            TLVEWA+A+G+SC +L+  LH G+RSREK+  AN R+VVH+AK+YQ RGL LQDL+QEG+
Sbjct: 270  TLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 329

Query: 1235 MGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNL 1414
            +GLMKSIEKFKPQ GCRF+TYAYWWIRQ+I KAIFQ+SRTIRLPENVY LL +V  AK  
Sbjct: 330  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 389

Query: 1415 YIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVE 1591
            YIQEG+H PT EE+A RVGI+++KLE LL  TR PLSMQQ VW DQNTTFQEITAD+E+E
Sbjct: 390  YIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 449

Query: 1592 IPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQ 1771
            IP++ V K+LMR+H+R LL+IL  KERRIIRLRFGIEDG+ KSLS+IG+VFG++KERVRQ
Sbjct: 450  IPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQ 509

Query: 1772 LESRALDKLRKCLSTEGLGAYAELL 1846
            LESRAL KL++C+ + GL AYA+LL
Sbjct: 510  LESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  511 bits (1317), Expect = e-142
 Identities = 297/573 (51%), Positives = 372/573 (64%), Gaps = 12/573 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLS-------VLMLHEQXXXXXXXXXXXXXXWNFPA 325
            ME+ R  L SP  FP +   +N    S       V MLHEQ               NFP 
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 326  SALLQEQHVEFRPLLS---DDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLY 496
            S LLQEQ  EFRPLL+   +DKT Q T+D ++ + G S +E   S++       +Q +L+
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDV------LDQLILH 114

Query: 497  ASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXE 676
            ++   SL               +QS   + D L  V+P +                   +
Sbjct: 115  SNLSWSL--------------TMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQ 160

Query: 677  E-SNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAP 853
            + +NL    S    TG E T L+    +E+                    K K I HE  
Sbjct: 161  KCANLDDTVS----TGLEPTDLS-NFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPY 215

Query: 854  SLRKADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQ 1033
            S R+A +Q+KIN GFD  DPLRLFL G ET+QLL+AKEE EL  Q++ L  LE VK + +
Sbjct: 216  SSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFK 275

Query: 1034 SQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQ 1213
             QF R+PTLVEWA+A+G+S  ++QS LH G+RSREK+  AN R+VVH+AKQYQGRGL+LQ
Sbjct: 276  LQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQ 335

Query: 1214 DLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQ 1393
            DL+QEGSMGLMKSIEKFKPQVGCRF+TYAYWWIRQ++RKAIFQ+SRTIRLPENVY  L +
Sbjct: 336  DLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGK 395

Query: 1394 VKNAKNLYIQEG-HHPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEI 1570
            V  AK  YI EG H+PT EELA R+GI+  +LE LL+  RMPLSMQQ VW DQ TTFQEI
Sbjct: 396  VSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEI 455

Query: 1571 TADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGI 1750
            TAD EVEIPEL V K+LMR+HV +LL+IL P+ER+IIRLR+GIEDG+ KSLS+IGSVFG+
Sbjct: 456  TADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGL 515

Query: 1751 TKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            +KERVRQLESRAL KL++CL++ GL AYA+LL+
Sbjct: 516  SKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  496 bits (1277), Expect = e-137
 Identities = 287/570 (50%), Positives = 362/570 (63%), Gaps = 9/570 (1%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTP-----LSVLMLHEQXXXXXXXXXXXXXXWNFPASA 331
            ME+GR+ L S S FP   QLR+  P      SVLMLHEQ               +FP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 332  LLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLYAS 502
            LLQEQ  EF+PLL    ++K  Q TLD  +  N  + E+    +    VK F Q  +  S
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFNIDDFYKLVKDFRQLHVTPS 120

Query: 503  DLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEES 682
             +         GE   + + L+SN      + DV+P D                   E S
Sbjct: 121  QI---------GENSPTGSALESNTTANVHM-DVEPSDVLTLAKHALSASLEAASLAETS 170

Query: 683  NLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLR 862
                A  N      E TSL +    E                       K   +E  S  
Sbjct: 171  KSISAGLN------ESTSLGLGWEEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSN 224

Query: 863  KADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQF 1042
             +D++RK   G + +DPLRLFL G ETRQLL+ KEE EL  +++ + +LE VK RLQSQF
Sbjct: 225  SSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQF 284

Query: 1043 NREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLM 1222
             REPTL+EWAEA+G+SC +LQS L  G  SREK+  +N R+VVH+AKQYQGRGL LQDL+
Sbjct: 285  GREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLL 344

Query: 1223 QEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1402
            QEGSMGLMKS+EKFKPQ GCRF+TYAYWW+RQ+IRKAIFQ+SRTIRLPENVY+LL +V  
Sbjct: 345  QEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLE 404

Query: 1403 AKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITAD 1579
            AK  YIQEG+ +P+ EELA RVG+SVEKL  LL+ TRMP+SMQQ VW DQ+TTFQE+TAD
Sbjct: 405  AKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTAD 464

Query: 1580 SEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKE 1759
            + +EIP+L V K+LMR+HVRNLL  L  +ER+IIRLR+GIEDG+ +SL++IG +FG++KE
Sbjct: 465  TGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGLSKE 524

Query: 1760 RVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            RVRQLESRA  KL++ L ++GLGAYA LL+
Sbjct: 525  RVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  488 bits (1255), Expect = e-135
 Identities = 274/543 (50%), Positives = 357/543 (65%), Gaps = 8/543 (1%)
 Frame = +2

Query: 245  SVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQHVEFRPLLSDDKTLQTTLDWRKTNNG 424
            SV MLHEQ               +FP S LLQEQ  E++P L      +TTL+ R+ +  
Sbjct: 15   SVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHNK-ETTLNTRQMDMT 73

Query: 425  ASCEEKKSSELDSYVKHFEQQLLYASDLCSLFPSLCTGEKPFS-STILQSNAPDMDSLAD 601
            +  E+  +S  D  V  F QQL   S L +L    C+  +  + S+ILQ    D +  AD
Sbjct: 74   SVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLT--CSPTRGIAASSILQPVDIDSEWPAD 131

Query: 602  VKPCDXXXXXXXXXXXXXXXXXXXEESNLSGADSNVFLTGSELTSLAIEAPIEKEIXXXX 781
              P +                    E  L   D +  L     ++   ++ ++K      
Sbjct: 132  GVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPSGLASTSLTDSSLKKNKVVRS 191

Query: 782  XXXXXXXXXXXXXPKPKAIVHEAPSLRKADIQRKINV------GFDQSDPLRLFLSGSET 943
                          K K +  E+   RK+D+QR++ +      G+D +DPLRLFLSG E+
Sbjct: 192  TRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRLFLSGPES 251

Query: 944  RQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHLG 1123
            RQLL+ +EE +L  Q++ L+RLEEVK+RLQ+Q  REPTL EWA+A+G SC+ LQ+ LH  
Sbjct: 252  RQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYALQTQLHCA 311

Query: 1124 HRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAY 1303
            +RS+EK+  AN R+VVH+AK YQGRGL+LQDL QEGS GLMKSIEKFKP+ GCRF TYAY
Sbjct: 312  NRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAY 371

Query: 1304 WWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISVE 1480
            WWIR ++RKAIF +SRTIRLPEN+Y+LL +V  AK  YIQEG+ HPT EELA +VGI++E
Sbjct: 372  WWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARKVGITIE 431

Query: 1481 KLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSILP 1660
            K+++LLF++R P+SMQQ VW DQ+TTFQEITADS +EIP++ V+K+LMR HV NLL+IL 
Sbjct: 432  KMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVHNLLNILS 491

Query: 1661 PKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYAE 1840
            PKER IIRLRFGIEDGE K+LS IG VFG+TKERVRQLESRAL KLR+CL ++GL AY +
Sbjct: 492  PKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQGLDAYTD 551

Query: 1841 LLI 1849
            LL+
Sbjct: 552  LLV 554


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  486 bits (1252), Expect = e-134
 Identities = 277/570 (48%), Positives = 373/570 (65%), Gaps = 9/570 (1%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPL--SVLMLHEQXXXXXXXXXXXXXXWNFPASALLQ 340
            ME+ R L+ SP  FP +  +RN +    SVL+LHEQ               +   S L+Q
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQ 60

Query: 341  EQHVEFRPLLS--DDKTLQTTLDWRKT----NNGASCEEKKSSELDSYVKHFEQQLLYAS 502
            +Q  E RPLLS  DD T Q T D R+      + +S E     + D Y    + QLL   
Sbjct: 61   DQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRP 120

Query: 503  DLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEES 682
            +L  L+ SL   E PF +T   S     +++   +                      +E+
Sbjct: 121  ELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEA-------NHVLALAREAFSACKEA 173

Query: 683  NLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLR 862
                 D+ ++   S   SL + +P+++ +                 PKP+    E    R
Sbjct: 174  ASIAEDARLYDNSSSTRSL-VGSPVQRIVRSKRRLERQAKRRA---PKPQLEDQEMNHRR 229

Query: 863  KADIQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQF 1042
            K +  +K + G+D +DPLRLFL G ET QLLSAKEE +L  +I+ L +L+EV+ RLQ+QF
Sbjct: 230  KLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQF 289

Query: 1043 NREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLM 1222
            +REPTLVEWA A+G+S   LQ  ++ G+ SREK+  ANFRLVV++AKQYQGRGLNLQDL+
Sbjct: 290  SREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLL 349

Query: 1223 QEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1402
            Q GSMGLMKS+EKFKP VGCRF+TYAYWWIRQSIRK++FQ+SRTIRLPENVY+LL +V  
Sbjct: 350  QLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYE 409

Query: 1403 AKNLYIQEGHH-PTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITAD 1579
            AK   I++G+H PT E++A   G+SVEKL+ LL+++R+PLSMQ+PVW+DQ+TTFQEITAD
Sbjct: 410  AKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITAD 469

Query: 1580 SEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKE 1759
            + VE P++  +K++MR+H RNLLS+L P+ER+IIRLRFGIEDGE KSLS IG+ FG++KE
Sbjct: 470  TAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKE 529

Query: 1760 RVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            R+RQ+ESRAL KL++CLS+ GL AYAE+L+
Sbjct: 530  RIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  486 bits (1250), Expect = e-134
 Identities = 288/576 (50%), Positives = 355/576 (61%), Gaps = 15/576 (2%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLR-NFTPLS----VLMLHEQXXXXXXXXXXXXXXWNFPASA 331
            ME  R +  S   FP +     N  PLS    VLML EQ               NFPAS 
Sbjct: 1    MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 332  LLQEQHVEFRPLL---SDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLYAS 502
            LLQEQ  E+RPLL    +DKT Q  L  R+ +     EE  +   D  V  F + L Y  
Sbjct: 61   LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120

Query: 503  DLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEES 682
             L +L  S  TGE   SST LQ  + D+D   +   C+                   E+ 
Sbjct: 121  HLQNLLASSQTGEISASST-LQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDL 179

Query: 683  NLSGADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLR 862
                AD +    G   T LA +  I +                   PK K I  E    R
Sbjct: 180  KSIKADDDSIPFGLASTGLA-DPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLAR 238

Query: 863  KAD------IQRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKV 1024
            K D      +++K N   DQ+DPL  FL G ET+QLL+ ++E +L  QI+ L RLEEVK 
Sbjct: 239  KDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKT 298

Query: 1025 RLQSQFNREPTLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGL 1204
            +LQSQF REPT+ EWAE +G++C +L + L  G RSREK+  AN R+VVHVAK YQGRGL
Sbjct: 299  KLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGL 358

Query: 1205 NLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSL 1384
            +LQDL+QEGSMGLMKS+EKF P VG RF  YA+WWIRQ+IRKA+F++SRTIRLPE V+ L
Sbjct: 359  SLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFIL 418

Query: 1385 LRQVKNAKNLYIQEGH-HPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTF 1561
            L +V  AK LYIQEG+ HPT EELA RVG++VEK++ LLFS R+P+SMQQ VW DQNTTF
Sbjct: 419  LGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTF 478

Query: 1562 QEITADSEVEIPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSV 1741
            QEITAD  VE  ++ V K+LMR+HV N+LSIL PKERRIIRLR+G EDGE KSLS+IG +
Sbjct: 479  QEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDI 538

Query: 1742 FGITKERVRQLESRALDKLRKCLSTEGLGAYAELLI 1849
            FG++KERVRQLE RAL KL+KCL  +GL AY +LL+
Sbjct: 539  FGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  485 bits (1249), Expect = e-134
 Identities = 280/544 (51%), Positives = 359/544 (65%), Gaps = 9/544 (1%)
 Frame = +2

Query: 245  SVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQHVEFRPLLSDDKTLQTTLDWRKTNNG 424
            SV MLHEQ               +FP S LLQEQ  E++PLL      +TTL+ R+ +  
Sbjct: 15   SVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHNK-ETTLNTRQMDMT 73

Query: 425  ASCEEKKSSELDSYVKHFEQQLLYASDLCSLFPSLCTGEKPFS-STILQSNAPDMDSLAD 601
            +  E+   S  D  V  F QQL   S L +L    C+  +  + S+ILQ    D +  AD
Sbjct: 74   SVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLT--CSPTRGIAASSILQPVDIDSEWPAD 131

Query: 602  VKPCDXXXXXXXXXXXXXXXXXXXEESNLSGADSNVFLT-GSELTSLAIEAPIEKEIXXX 778
              P +                    E  L   D +  L  G   TSLA  + ++K     
Sbjct: 132  GLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLA-NSSLKKNKVVR 190

Query: 779  XXXXXXXXXXXXXXPKPKAIVHEAPSLRKADIQRKINV------GFDQSDPLRLFLSGSE 940
                           K K I  E+   RK+D+QR++ +      G+DQ+DPLRLFLSG E
Sbjct: 191  STRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRLFLSGPE 250

Query: 941  TRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHL 1120
            +RQLL+ +EE  L  Q++ L+R EEVK+RLQSQ  REPTL EWA+A+G+SC+ LQ+ LH 
Sbjct: 251  SRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTLQTQLHC 310

Query: 1121 GHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYA 1300
             +RS+EK+  AN R+VVH+AK YQGRGL+LQDL QEGS GLMKSI+KFKP+ GCRF TYA
Sbjct: 311  ANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGCRFGTYA 370

Query: 1301 YWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISV 1477
            YWWIR +IRKAIF +SRTIRLPEN+Y+LL ++  AK  YIQEG+ HPT EELA RVGI+V
Sbjct: 371  YWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELARRVGITV 430

Query: 1478 EKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSIL 1657
            EKL++LLF++R P+SMQQ +W+DQ+TTFQEITADS +EIP + V+K+LMRRHV NLL+IL
Sbjct: 431  EKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVHNLLNIL 490

Query: 1658 PPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYA 1837
             PKE+ IIRLRFGIEDG+ K+LS IG VFG+TKERVRQLE RAL KL++CL ++GL AY 
Sbjct: 491  SPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQGLDAYI 550

Query: 1838 ELLI 1849
            +LL+
Sbjct: 551  DLLV 554


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  484 bits (1245), Expect = e-134
 Identities = 280/545 (51%), Positives = 343/545 (62%), Gaps = 10/545 (1%)
 Frame = +2

Query: 245  SVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQHVEFRPLL---SDDKTLQTTLDWRKT 415
            SVLMLHEQ               NFPAS LL EQ  E+RPLL    +DKT Q  L  R+ 
Sbjct: 33   SVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM 92

Query: 416  NNGASCEEKKSSELDSYVKHFEQQLLYASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSL 595
            +     EE  +   D  V  F + L +  +L  L  S   GE   SST L+  + D++  
Sbjct: 93   DTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASST-LEHVSVDLERR 151

Query: 596  ADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSGADSNVFLTGSELTSLAIEAPIEKEIXX 775
             +    +                   E+     AD +    G   TSLA +  I +    
Sbjct: 152  PNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKADDDSIPFGLASTSLA-DPSIGRNKTV 210

Query: 776  XXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADIQRKI------NVGFDQSDPLRLFLSGS 937
                           PK K I  E    RK D Q K+      N   DQ DPLRLFL G 
Sbjct: 211  RSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGP 270

Query: 938  ETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLH 1117
            ET+QLL+ ++E +L  QI+ L RLEEVK  LQSQF REPT+ EWAE  G++C +LQS LH
Sbjct: 271  ETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLH 330

Query: 1118 LGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTY 1297
             G+RSREK+  AN R+VVHVAK YQGRGL+LQDL+QEGSMGLMKS+EKF P  G RF  Y
Sbjct: 331  SGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNY 390

Query: 1298 AYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGIS 1474
            A+WWIRQ+IRKA+F++SRTIRLPE V+ LL +V  AK LYIQEG+ HPT EELA RVG++
Sbjct: 391  AFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVT 450

Query: 1475 VEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSI 1654
            VEK++ LLFS R+P+SMQQ VW DQNTTFQEITAD  VE  ++ V K+LMRRHV N+LS+
Sbjct: 451  VEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSV 510

Query: 1655 LPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAY 1834
            L PKERRIIRLR+G EDGE KSLS+IG +FG++KERVRQLE RAL KL+KCL  +GL AY
Sbjct: 511  LHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAY 570

Query: 1835 AELLI 1849
             +LL+
Sbjct: 571  VDLLL 575


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  475 bits (1223), Expect = e-131
 Identities = 269/566 (47%), Positives = 354/566 (62%), Gaps = 5/566 (0%)
 Frame = +2

Query: 167  MESGRYLLHSPSLFPQKIQLRNFTPLSV-LMLHEQXXXXXXXXXXXXXXWNFPASALLQE 343
            ME GR LL  P  FP +  LRN+ P S                        F  S LLQE
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQE 60

Query: 344  QHVEFRPLL---SDDKTLQTTLDWRKTNNGASCEEKKSSELDSYVKHFEQQLLYASDLCS 514
            Q  EF+PLL    +DKT Q  L+ R+ ++GA   E    + + +V  FE+  ++      
Sbjct: 61   QRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVHWPGFWH 120

Query: 515  LFPSLCTGEKPFSSTILQSNAPDMDSLADVKPCDXXXXXXXXXXXXXXXXXXXEESNLSG 694
            + PSL T  K  SS  +++         DV+  D                   EES L G
Sbjct: 121  VLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKLVG 180

Query: 695  ADSNVFLTGSELTSLAIEAPIEKEIXXXXXXXXXXXXXXXXXPKPKAIVHEAPSLRKADI 874
             DS+      ++ S++     +K +                 P+   + +E P  R ADI
Sbjct: 181  TDSD------DMLSVSFLGKGDKTVRSTRLLERRSKRRKV--PESSVLFYENPRNRAADI 232

Query: 875  QRKINVGFDQSDPLRLFLSGSETRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREP 1054
            +++++ G +  DPLRLFL+G ETRQLL+ +EE EL  Q++ L +LE+VK RLQS+F REP
Sbjct: 233  RKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGREP 292

Query: 1055 TLVEWAEAIGMSCWILQSHLHLGHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGS 1234
            TLVEWAEA+G+SC ILQS +  G  SREK+ CAN RLVVH+AKQYQGRG+ +QDLMQEGS
Sbjct: 293  TLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQEGS 352

Query: 1235 MGLMKSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNL 1414
            MGLMKS+EKFKPQVGCRF++YAYWWIRQ+               ENVY+LL +V  AK  
Sbjct: 353  MGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVLEAKRS 397

Query: 1415 YIQEG-HHPTNEELANRVGISVEKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVE 1591
             IQEG H+P+ E+LA RVGI+VEKL  LL+ TR+PLSMQQPVW DQ+TTFQE+TAD+ +E
Sbjct: 398  SIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTADTRIE 457

Query: 1592 IPELYVNKKLMRRHVRNLLSILPPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQ 1771
            IP++ V K++MR+HVR LL  L  +ER+IIRLRFGIEDG  KSLS+IG ++G++KERVRQ
Sbjct: 458  IPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKERVRQ 517

Query: 1772 LESRALDKLRKCLSTEGLGAYAELLI 1849
            LESRAL KL++CL ++ L AYA+L++
Sbjct: 518  LESRALYKLKQCLGSQDLEAYADLIV 543


>ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phaseolus vulgaris]
            gi|561036230|gb|ESW34760.1| hypothetical protein
            PHAVU_001G178600g [Phaseolus vulgaris]
          Length = 550

 Score =  472 bits (1215), Expect = e-130
 Identities = 271/544 (49%), Positives = 352/544 (64%), Gaps = 9/544 (1%)
 Frame = +2

Query: 245  SVLMLHEQXXXXXXXXXXXXXXWNFPASALLQEQHVEFRPLLSDDKTLQTTLDWRKTNNG 424
            SV+MLHEQ               +FP S LLQEQ  E+RPLL  +   + TL+ R+ +  
Sbjct: 15   SVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVNNK-EATLNTRQMDMT 73

Query: 425  ASCEEKKSSELDSYVKHFEQQLLYASDLCSLFPSLCTGEKPFSSTILQSNAPDMDSLADV 604
            +  E+  +   D  V  F  QL   S L +L     T     S T+      D DS    
Sbjct: 74   SVQEKSNTGNPDPLVHDFVHQLHLRSHLQNLLTCYPTRGIAASLTL---QPVDNDS---E 127

Query: 605  KPCDXXXXXXXXXXXXXXXXXXXEESNLSGADSNV--FLTGSELTSLAIEAPIEKEIXXX 778
            +P D                     S++   D +V     G   TSL +++ +++     
Sbjct: 128  RPADGLPRNAVSLAQQALSASKQAASSVEVDDDDVDPLSFGLASTSLGVDS-LKRNKIVR 186

Query: 779  XXXXXXXXXXXXXXPKPKAIVHEAPSLRKADIQRKI------NVGFDQSDPLRLFLSGSE 940
                           K K +  E+   RK+ +QRK+      N GFDQ+DPLR+FLS  E
Sbjct: 187  STRIIERRSKQRKTSKSKLLDEESFLERKSYVQRKLRLEKKLNEGFDQNDPLRMFLSDPE 246

Query: 941  TRQLLSAKEERELFVQIKALTRLEEVKVRLQSQFNREPTLVEWAEAIGMSCWILQSHLHL 1120
            +RQLL+ +EE +L  Q++ L+RLEEVK+RLQSQ  REPTL EWA+ +G+SC  LQ+ LH 
Sbjct: 247  SRQLLTREEESQLITQLQDLSRLEEVKIRLQSQIRREPTLAEWADVLGLSCCALQTQLHC 306

Query: 1121 GHRSREKMACANFRLVVHVAKQYQGRGLNLQDLMQEGSMGLMKSIEKFKPQVGCRFSTYA 1300
             +RS+EK+  AN R+VVH+AK YQGRGLNLQDL+QEGS GL+KSI+KFKP  GCRF TYA
Sbjct: 307  ANRSKEKLFHANMRMVVHIAKYYQGRGLNLQDLLQEGSTGLLKSIDKFKPGGGCRFGTYA 366

Query: 1301 YWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLYIQEGH-HPTNEELANRVGISV 1477
            YWWIR SIR+AIF +SRTIR+PEN+Y LL +V  AK  +IQEG+ HP+ EELA RVGI+V
Sbjct: 367  YWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVLEAKKSFIQEGNIHPSKEELARRVGITV 426

Query: 1478 EKLESLLFSTRMPLSMQQPVWLDQNTTFQEITADSEVEIPELYVNKKLMRRHVRNLLSIL 1657
            +KLE+LLF++R P+SMQQ VW DQ TTFQEITADS +EIP++ V+K+LMRRHV NLL++L
Sbjct: 427  DKLENLLFTSRNPISMQQSVWADQETTFQEITADSAIEIPDVCVSKQLMRRHVHNLLNML 486

Query: 1658 PPKERRIIRLRFGIEDGEPKSLSQIGSVFGITKERVRQLESRALDKLRKCLSTEGLGAYA 1837
             PKE+ I+RLRFGIEDG+ K+LS IG VFG+TKERVRQLESRAL KL+ CL ++GL +Y 
Sbjct: 487  SPKEKSILRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKDCLESQGLDSYI 546

Query: 1838 ELLI 1849
            +LLI
Sbjct: 547  DLLI 550