BLASTX nr result
ID: Sinomenium21_contig00001735
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium21_contig00001735
(473 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI18915.3| unnamed protein product [Vitis vinifera] 314 9e-84
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 314 9e-84
gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parvi... 311 5e-83
gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t... 310 1e-82
gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum ... 310 1e-82
gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris] 310 1e-82
gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x sou... 310 1e-82
gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata] 305 3e-81
gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus... 303 1e-80
gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orient... 303 1e-80
gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum ma... 303 1e-80
gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi] 303 2e-80
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru... 303 2e-80
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 303 2e-80
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su... 303 2e-80
gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella tric... 303 2e-80
gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron m... 302 4e-80
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 301 6e-80
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su... 301 6e-80
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 301 8e-80
>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 314 bits (804), Expect = 9e-84
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 698 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 757
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 758 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 817
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 818 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 854
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 314 bits (804), Expect = 9e-84
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 806
>gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 311 bits (798), Expect = 5e-83
Identities = 155/157 (98%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 572 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 631
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 632 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 691
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 692 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 728
>gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 310 bits (795), Expect = 1e-82
Identities = 154/157 (98%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 569 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 628
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQ++QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 629 ELIKAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 688
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 689 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 725
>gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 310 bits (795), Expect = 1e-82
Identities = 154/157 (98%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKINETISKAKNEVK
Sbjct: 569 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVK 628
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 629 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 688
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 689 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 725
>gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 310 bits (795), Expect = 1e-82
Identities = 154/157 (98%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKINETISKAKNEVK
Sbjct: 571 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVK 630
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 631 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 690
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 691 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 727
>gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 310 bits (795), Expect = 1e-82
Identities = 154/157 (98%), Positives = 157/157 (100%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKINETISKAKNEVK
Sbjct: 569 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVK 628
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 629 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 688
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 689 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 725
>gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 305 bits (782), Expect = 3e-81
Identities = 151/157 (96%), Positives = 156/157 (99%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETISKAKNEVK
Sbjct: 572 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKNEVK 631
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTAGS
Sbjct: 632 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGS 691
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFT
Sbjct: 692 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFT 728
>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
Length = 1842
Score = 303 bits (777), Expect = 1e-80
Identities = 150/157 (95%), Positives = 154/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQN FS+GIGDTIADAATMEKINETIS AKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISNAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELIRAAQE+QLE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 ELIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 806
>gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 303 bits (777), Expect = 1e-80
Identities = 150/157 (95%), Positives = 154/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKIN+TISKAKNEVK
Sbjct: 569 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVK 628
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
+LIR AQE+ LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 629 DLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 688
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 689 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 725
>gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 303 bits (777), Expect = 1e-80
Identities = 151/157 (96%), Positives = 153/157 (97%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI AKNEVK
Sbjct: 327 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIQNAKNEVK 386
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELIRAAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSE NNLKAMVTAGS
Sbjct: 387 ELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSEHNNLKAMVTAGS 446
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFT
Sbjct: 447 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFT 483
>gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 303 bits (776), Expect = 2e-80
Identities = 150/157 (95%), Positives = 155/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKIN+TI+KAKNEVK
Sbjct: 568 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINDTITKAKNEVK 627
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AA E+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 628 ELIKAAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 687
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFI+RTLPHFT
Sbjct: 688 KGSFINISQMTACVGQQNVEGKRIPYGFINRTLPHFT 724
>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
Length = 1866
Score = 303 bits (775), Expect = 2e-80
Identities = 149/157 (94%), Positives = 155/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKINETIS+AKN+VK
Sbjct: 665 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISRAKNDVK 724
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELIR AQ ++LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 725 ELIRKAQAKELEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 784
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 785 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 821
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 303 bits (775), Expect = 2e-80
Identities = 151/157 (96%), Positives = 154/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 653 VIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVK 712
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 713 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 772
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GF DRTLPHFT
Sbjct: 773 KGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFT 809
>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
X1 [Setaria italica]
Length = 1852
Score = 303 bits (775), Expect = 2e-80
Identities = 150/157 (95%), Positives = 154/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+ AQ++ LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 ELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFT 806
>gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 303 bits (775), Expect = 2e-80
Identities = 151/157 (96%), Positives = 154/157 (98%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 572 VIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVK 631
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 632 ELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 691
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GF DRTLPHFT
Sbjct: 692 KGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFT 728
>gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron macrophyllum]
Length = 589
Score = 302 bits (773), Expect = 4e-80
Identities = 151/157 (96%), Positives = 156/157 (99%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQ LVNYWLLQ+GFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 159 VIWEEVGPDAARKFLGHTQRLVNYWLLQSGFSIGIGDTIADAATMEKINETISKAKNEVK 218
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
+LIRAAQ++QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGS
Sbjct: 219 DLIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGS 278
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 279 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 315
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 301 bits (771), Expect = 6e-80
Identities = 149/157 (94%), Positives = 153/157 (97%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETIS AKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
+LIR AQ ++LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 DLIRKAQNKELEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 806
>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
X2 [Setaria italica]
Length = 1852
Score = 301 bits (771), Expect = 6e-80
Identities = 150/157 (95%), Positives = 152/157 (96%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETISKAKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+ A E LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 ELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFT 806
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 301 bits (770), Expect = 8e-80
Identities = 149/157 (94%), Positives = 153/157 (97%)
Frame = -3
Query: 471 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVK 292
VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKNEVK
Sbjct: 650 VIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVK 709
Query: 291 ELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 112
ELI+ A ++ LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS
Sbjct: 710 ELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 769
Query: 111 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFT 1
KGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFT
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFT 806